Searched refs:JumperEdit (Results 1 – 9 of 9) sorted by relevance
84 typedef struct JumperEdit struct89 } JumperEdit; argument95 JumperEdit* edits;
484 JumperEdit* e = &(hsp->map_info->edits->edits[i]); in s_ComputeAlignmentScore()1463 edits_size * sizeof(JumperEdit)); in s_MergeHSPs()1515 JumperEdit* edit = merged_hsp->map_info->edits->edits + in s_MergeHSPs()1528 JumperEdit* edit = merged_hsp->map_info->edits->edits + in s_MergeHSPs()1535 hsp->map_info->edits->num_edits * sizeof(JumperEdit)); in s_MergeHSPs()2331 JumperEdit* edits = first->map_info->edits->edits; in s_FindSpliceJunctionsForOverlaps()2339 JumperEdit* edits = second->map_info->edits->edits; in s_FindSpliceJunctionsForOverlaps()2352 JumperEdit* edits = first->map_info->edits->edits; in s_FindSpliceJunctionsForOverlaps()2405 JumperEdit* edits = second->map_info->edits->edits; in s_FindSpliceJunctionsForOverlaps()
2664 retval->edits = (JumperEdit*)calloc(num, sizeof(JumperEdit)); in JumperEditsBlockNew()2685 block->num_edits * sizeof(JumperEdit)); in JumperEditsBlockDup()2715 JumperEdit* edit = &retval->edits[k]; in JumperFindEdits()2753 JumperEdit* edit = &retval->edits[k]; in JumperFindEdits()2818 sizeof(JumperEdit)); in JumperEditsBlockCombine()3122 JumperEdit* edit = retval->map_info->edits->edits + in s_CreateHSPForWordHit()
86 typedef struct JumperEdit struct91 } JumperEdit; argument97 JumperEdit* edits;
384 JumperEdit* e = &(hsp->map_info->edits->edits[i]); in s_ComputeAlignmentScore()783 JumperEdit* edits = hsp->map_info->edits->edits + k; in s_TrimHSP()826 JumperEdit* edits = hsp->map_info->edits->edits + k; in s_TrimHSP()1639 JumperEdit* edit = merged_hsp->map_info->edits->edits + in s_MergeHSPs()1670 JumperEdit* edit = merged_hsp->map_info->edits->edits + in s_MergeHSPs()1699 JumperEdit* edit = merged_hsp->map_info->edits->edits + in s_MergeHSPs()1714 JumperEdit* edit = merged_hsp->map_info->edits->edits + in s_MergeHSPs()2468 JumperEdit* edits = first->map_info->edits->edits; in s_FindSpliceJunctionsForOverlaps()2476 JumperEdit* edits = second->map_info->edits->edits; in s_FindSpliceJunctionsForOverlaps()2489 JumperEdit* edits = first->map_info->edits->edits; in s_FindSpliceJunctionsForOverlaps()[all …]
2727 retval->edits = (JumperEdit*)calloc(num, sizeof(JumperEdit)); in JumperEditsBlockNew()2748 block->num_edits * sizeof(JumperEdit)); in JumperEditsBlockDup()2778 JumperEdit* edit = &retval->edits[k]; in JumperFindEdits()2816 JumperEdit* edit = &retval->edits[k]; in JumperFindEdits()2881 sizeof(JumperEdit)); in JumperEditsBlockCombine()3166 JumperEdit* edit = retval->map_info->edits->edits + in s_CreateHSPForWordHit()