Searched refs:KmerHash (Results 1 – 5 of 5) sorted by relevance
| /dports/biology/kallisto/kallisto-0.46.1/unit_tests/ |
| H A D | test_kmerhashtable.cpp | 39 unordered_map<Kmer, int, KmerHash> kmap1;
41 KmerHashTable<int, KmerHash> kmap3;
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| /dports/biology/abyss/abyss-2.3.1/BloomDBG/ |
| H A D | bloom-dbg.h | 40 typedef google::sparse_hash_set<RollingBloomDBGVertex, hash<RollingBloomDBGVertex>> KmerHash; typedef
45 typedef unordered_set<RollingBloomDBGVertex, hash<RollingBloomDBGVertex>> KmerHash; typedef
543 KmerHash& contigEndKmers, in outputContig()
785 KmerHash& contigEndKmers, in processRead()
786 KmerHash& visitedBranchKmers, in processRead()
990 KmerHash contigEndKmers; in assemble()
993 KmerHash visitedBranchKmers; in assemble()
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| /dports/biology/kallisto/kallisto-0.46.1/src/ |
| H A D | Kmer.hpp | 109 struct KmerHash { struct
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| H A D | KmerIndex.h | 134 KmerHashTable<KmerEntry, KmerHash> kmap;
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| H A D | KmerHashTable.h | 12 template<typename T, typename Hash = KmerHash>
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