/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/spark/sv/evidence/ |
H A D | BreakpointEvidence.java | 4 import com.esotericsoftware.kryo.Kryo; 44 protected BreakpointEvidence( final Kryo kryo, final Input input ) { in BreakpointEvidence() 126 protected void serialize(final Kryo kryo, final Output output ) { in serialize() 165 public ExternalEvidence( final Kryo kryo, final Input input ) { in ExternalEvidence() 200 protected void serialize( final Kryo kryo, final Output output ) { in serialize() 311 protected ReadEvidence( final Kryo kryo, final Input input ) { in ReadEvidence() 480 private SplitRead( final Kryo kryo, final Input input ) { in SplitRead() 727 private LargeIndel( final Kryo kryo, final Input input ) { in LargeIndel() 966 private InterContigPair( final Kryo kryo, final Input input ) { in InterContigPair() 1015 private OutiesPair( final Kryo kryo, final Input input ) { in OutiesPair() [all …]
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H A D | KmerAndInterval.java | 4 import com.esotericsoftware.kryo.Kryo; 24 private KmerAndInterval( final Kryo kryo, final Input input ) { in KmerAndInterval() 30 protected void serialize( final Kryo kryo, final Output output ) { in serialize() 57 … public void write( final Kryo kryo, final Output output, final KmerAndInterval kmerAndInterval) { in write() 62 public KmerAndInterval read( final Kryo kryo, final Input input, in read()
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H A D | LibraryStatistics.java | 4 import com.esotericsoftware.kryo.Kryo; 34 private LibraryStatistics( final Kryo kryo, final Input input ) { in LibraryStatistics() 45 private void serialize( final Kryo kryo, final Output output ) { in serialize() 79 public void write( final Kryo kryo, final Output output, final LibraryStatistics stats ) { in write() 84 public LibraryStatistics read( final Kryo kryo, final Input input, in read()
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H A D | QNameAndInterval.java | 4 import com.esotericsoftware.kryo.Kryo; 31 private QNameAndInterval( final Kryo kryo, final Input input ) { in QNameAndInterval() 38 private void serialize( final Kryo kryo, final Output output ) { in serialize() 103 …public void write( final Kryo kryo, final Output output, final QNameAndInterval qNameAndInterval )… in write() 108 …public QNameAndInterval read( final Kryo kryo, final Input input, final Class<QNameAndInterval> kl… in read()
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H A D | ReadMetadata.java | 4 import com.esotericsoftware.kryo.Kryo; 143 private ReadMetadata( final Kryo kryo, final Input input ) { in ReadMetadata() 192 private void serialize( final Kryo kryo, final Output output ) { in serialize() 456 final Kryo kryo = new Kryo(); in writeStandalone() 477 final Kryo kryo = new Kryo(); in readStandalone() 520 private void serialize( final Kryo kryo, final Output output ) { in serialize() 558 public void write( final Kryo kryo, final Output output, in write() 652 private void serialize( final Kryo kryo, final Output output ) { in serialize() 669 public void write( final Kryo kryo, final Output output, in write() 701 private PartitionBounds( final Kryo kryo, final Input input ) { in PartitionBounds() [all …]
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/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/spark/sv/discovery/inference/ |
H A D | BreakpointComplications.java | 4 import com.esotericsoftware.kryo.Kryo; 144 protected BreakpointComplications(final Kryo kryo, final Input input) { in BreakpointComplications() 148 protected void serialize(final Kryo kryo, final Output output) { in serialize() 275 protected void serialize(final Kryo kryo, final Output output) { in serialize() 401 protected void serialize(final Kryo kryo, final Output output) { 623 protected void serialize(final Kryo kryo, final Output output) { 867 protected void serialize(final Kryo kryo, final Output output) { 927 protected void serialize(final Kryo kryo, final Output output) { 1138 protected void serialize(final Kryo kryo, final Output output) { 1263 protected void serialize(final Kryo kryo, final Output output) { [all …]
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H A D | CpxVariantInducingAssemblyContig.java | 4 import com.esotericsoftware.kryo.Kryo; 217 private CpxVariantInducingAssemblyContig(final Kryo kryo, final Input input) { in CpxVariantInducingAssemblyContig() 238 public void serialize(final Kryo kryo, final Output output) { in serialize() 334 BasicInfo(final Kryo kryo, final Input input) { in BasicInfo() 347 void serialize(final Kryo kryo, final Output output) { in serialize() 360 public void write(final Kryo kryo, final Output output, final BasicInfo alignedContig) { in write() 365 … public BasicInfo read(final Kryo kryo, final Input input, final Class<BasicInfo> clazz) { in read() 470 private Jump(final Kryo kryo, final Input input) { in Jump() 485 public void serialize(final Kryo kryo, final Output output) { in serialize() 498 public void write(final Kryo kryo, final Output output, final Jump alignedContig) { in write() [all …]
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/dports/audio/atunes/atunes-3.1.2/src/net/sourceforge/atunes/utils/ |
H A D | KryoFactory.java | 29 import com.esotericsoftware.kryo.Kryo; 54 public Kryo getKryo() throws ClassNotFoundException { in getKryo() 56 Kryo kryo = new Kryo(); in getKryo()
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H A D | FileSerializer.java | 25 import com.esotericsoftware.kryo.Kryo; 38 public File read(final Kryo kryo, final Input input, final Class<File> fileClass) { in read() 43 public void write(final Kryo kryo, final Output output, final File file) { in write()
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/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/spark/sv/utils/ |
H A D | KmerAndCount.java | 4 import com.esotericsoftware.kryo.Kryo; 28 private KmerAndCount(final Kryo kryo, final Input input ) { in KmerAndCount() 33 protected void serialize( final Kryo kryo, final Output output ) { in serialize() 54 … public void write( final Kryo kryo, final Output output, final KmerAndCount kmerAndInterval) { in write() 59 public KmerAndCount read(final Kryo kryo, final Input input, in read()
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H A D | StrandedInterval.java | 4 import com.esotericsoftware.kryo.Kryo; 30 public StrandedInterval(final Kryo kryo, final Input input) { in StrandedInterval() 35 private void serialize(final Kryo kryo, final Output output) { in serialize() 68 …public void write(final Kryo kryo, final Output output, final StrandedInterval strandedInterval ) { in write() 73 …public StrandedInterval read(final Kryo kryo, final Input input, final Class<StrandedInterval> kla… in read()
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H A D | SVKmerShort.java | 4 import com.esotericsoftware.kryo.Kryo; 39 private SVKmerShort(final Kryo kryo, final Input input) { in SVKmerShort() 43 private void serialize(final Kryo kryo, final Output output) { in serialize() 171 public void write( final Kryo kryo, final Output output, final SVKmerShort svKmer ) { in write() 176 … public SVKmerShort read( final Kryo kryo, final Input input, final Class<SVKmerShort> klass ) { in read()
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H A D | Strand.java | 4 import com.esotericsoftware.kryo.Kryo; 53 public void serialize(final Kryo kryo, final Output output) { in serialize() 60 public void write(final Kryo kryo, final Output output, final Strand strand) { in write() 65 public Strand read(final Kryo kryo, final Input input, final Class<Strand> kclass) { in read()
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/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/spark/sv/discovery/alignment/ |
H A D | AlignedAssembly.java | 4 import com.esotericsoftware.kryo.Kryo; 28 private AlignedAssembly(final Kryo kryo, final Input input) { in AlignedAssembly() 39 private void serialize(final Kryo kryo, final Output output) { in serialize() 48 … public void write( final Kryo kryo, final Output output, final AlignedAssembly alignedAssembly){ in write() 53 …public AlignedAssembly read(final Kryo kryo, final Input input, final Class<AlignedAssembly> clazz… in read()
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/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/spark/pathseq/ |
H A D | PSTaxonomyDatabase.java | 4 import com.esotericsoftware.kryo.Kryo; 24 private PSTaxonomyDatabase(final Kryo kryo, final Input input) { in PSTaxonomyDatabase() 40 protected void serialize(final Kryo kryo, final Output output) { in serialize() 56 …public void write(final Kryo kryo, final Output output, final PSTaxonomyDatabase taxonomyDatabase)… in write() 61 public PSTaxonomyDatabase read(final Kryo kryo, final Input input, in read()
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H A D | PSKmerBloomFilter.java | 4 import com.esotericsoftware.kryo.Kryo; 35 private PSKmerBloomFilter(final Kryo kryo, final Input input) { in PSKmerBloomFilter() 65 private void serialize(final Kryo kryo, final Output output) { in serialize() 95 public void write(final Kryo kryo, final Output output, final PSKmerBloomFilter kmerSet) { in write() 100 …public PSKmerBloomFilter read(final Kryo kryo, final Input input, final Class<PSKmerBloomFilter> k… in read()
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H A D | PSKmerSet.java | 4 import com.esotericsoftware.kryo.Kryo; 33 private PSKmerSet(final Kryo kryo, final Input input) { in PSKmerSet() 70 private void serialize(final Kryo kryo, final Output output) { in serialize() 99 public void write(final Kryo kryo, final Output output, final PSKmerSet kmerSet) { in write() 104 public PSKmerSet read(final Kryo kryo, final Input input, final Class<PSKmerSet> klass) { in read()
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/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/spark/utils/ |
H A D | HopscotchMultiMap.java | 4 import com.esotericsoftware.kryo.Kryo; 20 protected HopscotchMultiMap( final Kryo kryo, final Input input ) { super(kryo, input); } in HopscotchMultiMap() 29 …public void write(final Kryo kryo, final Output output, final HopscotchMultiMap hopscotchMultiMap … in write() 34 …public HopscotchMultiMap read(final Kryo kryo, final Input input, final Class<HopscotchMultiMap> k… in read()
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H A D | HopscotchUniqueMultiMap.java | 4 import com.esotericsoftware.kryo.Kryo; 21 protected HopscotchUniqueMultiMap( final Kryo kryo, final Input input ) { super(kryo, input); } in HopscotchUniqueMultiMap() 30 …public void write( final Kryo kryo, final Output output, final HopscotchUniqueMultiMap hopscotchMu… in write() 35 …public HopscotchUniqueMultiMap read( final Kryo kryo, final Input input, final Class<HopscotchUniq… in read()
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H A D | HopscotchSet.java | 4 import com.esotericsoftware.kryo.Kryo; 22 protected HopscotchSet( final Kryo kryo, final Input input ) { super(kryo, input); } in HopscotchSet() 43 public void write( final Kryo kryo, final Output output, final HopscotchSet hopscotchSet ) { in write() 48 … public HopscotchSet read( final Kryo kryo, final Input input, final Class<HopscotchSet> klass ) { in read()
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H A D | HopscotchMap.java | 4 import com.esotericsoftware.kryo.Kryo; 23 protected HopscotchMap( final Kryo kryo, final Input input ) { super(kryo, input); } in HopscotchMap() 36 public void write( final Kryo kryo, final Output output, final HopscotchMap hopscotchMap ) { in write() 41 … public HopscotchMap read( final Kryo kryo, final Input input, final Class<HopscotchMap> klass ) { in read()
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H A D | IntHistogram.java | 4 import com.esotericsoftware.kryo.Kryo; 36 private IntHistogram( final Kryo kryo, final Input input ) { in IntHistogram() 49 private void serialize( final Kryo kryo, final Output output ) { in serialize() 122 public void write( final Kryo kryo, final Output output, final IntHistogram histogram ) { in write() 127 … public IntHistogram read( final Kryo kryo, final Input input, final Class<IntHistogram> klass ) { in read() 257 private CDF( final Kryo kryo, final Input input ) { in CDF() 266 private void serialize( final Kryo kryo, final Output output ) { in serialize() 342 public void write( final Kryo kryo, final Output output, final CDF cdf ) { in write() 347 public CDF read( final Kryo kryo, final Input input, final Class<CDF> klass ) { in read()
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/dports/devel/spark/spark-2.1.1/sql/core/src/test/scala/org/apache/spark/sql/ |
H A D | DatasetSerializerRegistratorSuite.scala | 20 import com.esotericsoftware.kryo.{Kryo, Serializer} 51 override def registerClasses(kryo: Kryo): Unit = 61 override def write(kryo: Kryo, output: Output, t: KryoData): Unit = { 65 override def read(kryo: Kryo, input: Input, aClass: Class[KryoData]): KryoData = {
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/dports/www/phpsysinfo/phpsysinfo-3.3.4/data/ |
H A D | cpus.ini | 96 0x51,0x201="Kryo Silver" 97 0x51,0x205="Kryo Gold" 98 0x51,0x211="Kryo Silver" 99 0x51,0x800="Kryo 260/280 Gold (Cortex-A73)" 100 0x51,0x801="Kryo 260/280 Silver (Cortex-A53)" 101 0x51,0x802="Kryo 385 Gold (Cortex-A75)" 102 0x51,0x803="Kryo 385 Silver (Cortex-A55)" 103 0x51,0x804="Kryo 485 Gold" 104 0x51,0x805="Kryo 485 Silver"
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/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/spark/pathseq/ |
H A D | PathSeqBuildKmersSparkIntegrationTest.java | 3 import com.esotericsoftware.kryo.Kryo; 46 final Kryo kryo = new Kryo(); in testHopscotchSetFromFasta() 73 final Kryo kryo = new Kryo(); in testBloomFilterFromFasta() 111 final Kryo kryo = new Kryo();
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