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Searched refs:MAXREADLENGTH (Results 1 – 10 of 10) sorted by relevance

/dports/biology/velvet/velvet_1.2.10/src/
H A DlocallyCorrectedGraph.c43 static int MAXREADLENGTH = 100; variable
128 if (seqLength > MAXREADLENGTH) in extractSequence()
488 fastSequence = newTightString(MAXREADLENGTH); in prepareGraphForLocalCorrections()
489 slowSequence = newTightString(MAXREADLENGTH); in prepareGraphForLocalCorrections()
497 Fmatrix = callocOrExit(MAXREADLENGTH + 1, double *); in prepareGraphForLocalCorrections()
498 for (index = 0; index < MAXREADLENGTH + 1; index++) in prepareGraphForLocalCorrections()
499 Fmatrix[index] = callocOrExit(MAXREADLENGTH + 1, double); in prepareGraphForLocalCorrections()
529 for (index = 0; index <= MAXREADLENGTH; index++) { in deactivateLocalCorrectionSettings()
545 MAXREADLENGTH = value; in setLocalMaxReadLength()
H A DcorrectedGraph.c54 static int MAXREADLENGTH = 100; variable
535 if (seqLength > MAXREADLENGTH) in extractSequence()
2549 fastSequence = newTightString(MAXREADLENGTH); in correctGraph()
2550 slowSequence = newTightString(MAXREADLENGTH); in correctGraph()
2551 fastToSlowMapping = callocOrExit(MAXREADLENGTH + 1, Coordinate); in correctGraph()
2552 slowToFastMapping = callocOrExit(MAXREADLENGTH + 1, Coordinate); in correctGraph()
2553 Fmatrix = mallocOrExit(MAXREADLENGTH + 1, double *); in correctGraph()
2554 FmatrixMem = callocOrExit((MAXREADLENGTH + 1) * (MAXREADLENGTH + 1), double); in correctGraph()
2555 for (index = 0; index < MAXREADLENGTH + 1; index++) in correctGraph()
2556 Fmatrix[index] = FmatrixMem + index * (MAXREADLENGTH + 1); in correctGraph()
[all …]
/dports/biology/velvet/velvet_1.2.10/contrib/MetaVelvet-1.2.01/Velvet-1.1.06/
H A DlocallyCorrectedGraph.c43 static int MAXREADLENGTH = 100; variable
128 if (seqLength > MAXREADLENGTH) in extractSequence()
492 fastSequence = newTightString(MAXREADLENGTH); in prepareGraphForLocalCorrections()
493 slowSequence = newTightString(MAXREADLENGTH); in prepareGraphForLocalCorrections()
501 Fmatrix = callocOrExit(MAXREADLENGTH + 1, double *); in prepareGraphForLocalCorrections()
502 for (index = 0; index < MAXREADLENGTH + 1; index++) in prepareGraphForLocalCorrections()
503 Fmatrix[index] = callocOrExit(MAXREADLENGTH + 1, double); in prepareGraphForLocalCorrections()
533 for (index = 0; index <= MAXREADLENGTH; index++) { in deactivateLocalCorrectionSettings()
549 MAXREADLENGTH = value; in setLocalMaxReadLength()
H A DcorrectedGraph.c54 static int MAXREADLENGTH = 100; variable
535 if (seqLength > MAXREADLENGTH) in extractSequence()
2547 fastSequence = newTightString(MAXREADLENGTH); in correctGraph()
2548 slowSequence = newTightString(MAXREADLENGTH); in correctGraph()
2549 fastToSlowMapping = callocOrExit(MAXREADLENGTH + 1, Coordinate); in correctGraph()
2550 slowToFastMapping = callocOrExit(MAXREADLENGTH + 1, Coordinate); in correctGraph()
2551 Fmatrix = mallocOrExit(MAXREADLENGTH + 1, double *); in correctGraph()
2552 FmatrixMem = callocOrExit((MAXREADLENGTH + 1) * (MAXREADLENGTH + 1), double); in correctGraph()
2553 for (index = 0; index < MAXREADLENGTH + 1; index++) in correctGraph()
2554 Fmatrix[index] = FmatrixMem + index * (MAXREADLENGTH + 1); in correctGraph()
[all …]
/dports/biology/velvet/velvet_1.2.10/contrib/MetaVelvet-v0.3.1/src/
H A DlocallyCorrectedGraph.c43 static int MAXREADLENGTH = 100; variable
129 if (seqLength > MAXREADLENGTH) in extractSequence()
504 fastSequence = newTightString(MAXREADLENGTH); in prepareGraphForLocalCorrections()
505 slowSequence = newTightString(MAXREADLENGTH); in prepareGraphForLocalCorrections()
513 Fmatrix = callocOrExit(MAXREADLENGTH + 1, double *); in prepareGraphForLocalCorrections()
514 for (index = 0; index < MAXREADLENGTH + 1; index++) in prepareGraphForLocalCorrections()
515 Fmatrix[index] = callocOrExit(MAXREADLENGTH + 1, double); in prepareGraphForLocalCorrections()
551 for (index = 0; index <= MAXREADLENGTH; index++) { in deactivateLocalCorrectionSettings()
567 MAXREADLENGTH = value; in setLocalMaxReadLength()
H A DcorrectedGraph.c55 static int MAXREADLENGTH = 100; variable
545 if (seqLength > MAXREADLENGTH) in extractSequence()
2643 fastSequence = newTightString(MAXREADLENGTH); in correctGraph()
2644 slowSequence = newTightString(MAXREADLENGTH); in correctGraph()
2645 fastToSlowMapping = callocOrExit(MAXREADLENGTH + 1, Coordinate); in correctGraph()
2646 slowToFastMapping = callocOrExit(MAXREADLENGTH + 1, Coordinate); in correctGraph()
2647 Fmatrix = callocOrExit(MAXREADLENGTH + 1, double *); in correctGraph()
2648 for (index = 0; index < MAXREADLENGTH + 1; index++) in correctGraph()
2649 Fmatrix[index] = callocOrExit(MAXREADLENGTH + 1, double); in correctGraph()
2682 for (index = 0; index < MAXREADLENGTH + 1; index++) in correctGraph()
[all …]
/dports/security/axTLS/axTLS/httpd/
H A Daxhttp.h43 #define MAXREADLENGTH 8800 /* FF3=4096, IE7=8760 */ macro
H A Dproc.c314 char buf[MAXREADLENGTH], *tp, *next; in procreadhead()
853 char buf[MAXREADLENGTH], *next; in read_post_data()
/dports/lang/micropython/axtls-531cab9/httpd/
H A Daxhttp.h43 #define MAXREADLENGTH 8800 /* FF3=4096, IE7=8760 */ macro
H A Dproc.c319 char buf[MAXREADLENGTH], *tp, *next; in procreadhead()
864 char buf[MAXREADLENGTH], *next; in read_post_data()