Searched refs:MAX_ALIGNMENT_PER_ANCHOR (Results 1 – 4 of 4) sorted by relevance
66 perfect_section_in_read_t result_back_junctions [MAX_ALIGNMENT_PER_ANCHOR][MAX_EVENTS_IN_READ];67 perfect_section_in_read_t result_front_junctions [MAX_ALIGNMENT_PER_ANCHOR][MAX_EVENTS_IN_READ];68 int result_back_junction_numbers[MAX_ALIGNMENT_PER_ANCHOR];69 int result_front_junction_numbers[MAX_ALIGNMENT_PER_ANCHOR];
2533 …char * repeated_buffer_cigars[MAX_ALIGNMENT_PER_ANCHOR * 2 * global_context -> config.reported_mu…2534 …unsigned int repeated_buffer_pos[MAX_ALIGNMENT_PER_ANCHOR * 2 * global_context -> config.reported…2556 …1 = malloc(sizeof(int) * 2 * global_context -> config.multi_best_reads * MAX_ALIGNMENT_PER_ANCHOR);2559 …ndex1 = malloc(sizeof(int) * global_context -> config.multi_best_reads * MAX_ALIGNMENT_PER_ANCHOR);2561 …2 = malloc(sizeof(int) * 2 * global_context -> config.multi_best_reads * MAX_ALIGNMENT_PER_ANCHOR);2566 …reads * global_context -> config.multi_best_reads * MAX_ALIGNMENT_PER_ANCHOR*MAX_ALIGNMENT_PER_ANC…2567 …reads * global_context -> config.multi_best_reads * MAX_ALIGNMENT_PER_ANCHOR*MAX_ALIGNMENT_PER_ANC…2719 … int realign_index = (is_second_read + 2 * best_read_id)* MAX_ALIGNMENT_PER_ANCHOR + realignment_i;2758 … long long int scores_array [global_context -> config.multi_best_reads * MAX_ALIGNMENT_PER_ANCHOR];2834 …reads * global_context -> config.multi_best_reads * MAX_ALIGNMENT_PER_ANCHOR*MAX_ALIGNMENT_PER_ANC…[all …]
190 #define MAX_ALIGNMENT_PER_ANCHOR 2 macro
432 if(search_to_back && explain_context -> all_back_alignments < MAX_ALIGNMENT_PER_ANCHOR){ in new_explain_try_replace()438 }else if((!search_to_back) && explain_context -> all_front_alignments < MAX_ALIGNMENT_PER_ANCHOR){ in new_explain_try_replace()568 if(search_to_back && explain_context -> all_back_alignments < MAX_ALIGNMENT_PER_ANCHOR){ in new_explain_try_replace_xe()574 }else if((!search_to_back) && explain_context -> all_front_alignments < MAX_ALIGNMENT_PER_ANCHOR){ in new_explain_try_replace_xe()3184 if(final_alignment_number >= MAX_ALIGNMENT_PER_ANCHOR)break; in finalise_explain_CIGAR()3210 if(final_alignment_number >= MAX_ALIGNMENT_PER_ANCHOR)break; in finalise_explain_CIGAR()