Searched refs:MakeGap (Results 1 – 4 of 4) sorted by relevance
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/ |
| H A D | gaps_edit.cpp | 89 CRef<CDelta_seq> MakeGap(const CSeq_data& data, TSeqPos len, CDelta_ext& ext, TSeqPos gap_start, T… in MakeGap() function
122 CRef<CDelta_seq> MakeGap(const CDelta_seq& delta, TSeqPos len, CDelta_ext& ext, TSeqPos gap_start,… in MakeGap() function
125 return MakeGap(delta.GetLiteral().GetSeq_data(), len, ext, gap_start, gap_length); in MakeGap()
140 CRef<CDelta_seq> MakeGap(CBioseq::TInst& inst, TSeqPos gap_start, TSeqPos gap_length) in MakeGap() function
168 … CRef<CDelta_seq> gap_seq = MakeGap(*delta, lit_len, new_ext, gap_start, gap_length); in MakeGap()
197 CRef<CDelta_seq> delta = MakeGap(data, inst.GetLength(), ext, gap_start, gap_length); in MakeGap()
254 CRef<CDelta_seq> seq = MakeGap(bioseq.SetInst(), gap_start, nominal_length); in CreateGap()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/edit/ |
| H A D | gaps_edit.cpp | 89 CRef<CDelta_seq> MakeGap(const CSeq_data& data, TSeqPos len, CDelta_ext& ext, TSeqPos gap_start, T… in MakeGap() function
122 CRef<CDelta_seq> MakeGap(const CDelta_seq& delta, TSeqPos len, CDelta_ext& ext, TSeqPos gap_start,… in MakeGap() function
125 return MakeGap(delta.GetLiteral().GetSeq_data(), len, ext, gap_start, gap_length); in MakeGap()
140 CRef<CDelta_seq> MakeGap(CBioseq::TInst& inst, TSeqPos gap_start, TSeqPos gap_length) in MakeGap() function
168 … CRef<CDelta_seq> gap_seq = MakeGap(*delta, lit_len, new_ext, gap_start, gap_length); in MakeGap()
197 CRef<CDelta_seq> delta = MakeGap(data, inst.GetLength(), ext, gap_start, gap_length); in MakeGap()
254 CRef<CDelta_seq> seq = MakeGap(bioseq.SetInst(), gap_start, nominal_length); in CreateGap()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/table2asn/ |
| H A D | feature_table_reader.hpp | 56 …CRef<objects::CDelta_seq> MakeGap(objects::CBioseq& bioseq, const objects::CSeq_feat& feature_gap);
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| H A D | feature_table_reader.cpp | 1674 CRef<CDelta_seq> CFeatureTableReader::MakeGap(CBioseq& bioseq, const CSeq_feat& feature_gap) in MakeGap() function in CFeatureTableReader
1793 CRef<CDelta_seq> gap = MakeGap(*pBioseq, feature_gap); in MakeGapsFromFeatures()
1853 if (MakeGap(bioseq, *pSeqFeat)) { in MakeGapsFromFeatures()
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