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Searched refs:MapFromOrigToEdited (Results 1 – 7 of 7) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/
H A Dgnomon_objmgr.cpp482 cds_info = cds_info.MapFromOrigToEdited(amap); in GetCdsDnaSequence()
509 cds_info = cds_info.MapFromOrigToEdited(amap); in GetProtein()
537 cds_info = cds_info.MapFromOrigToEdited(amap); in GetProtein()
H A Dselect_alignments_alt.cpp186 cds_info = cds_info.MapFromOrigToEdited(model.GetAlignMap()); in FilterGenes()
H A Dgnomon_model.cpp335 CCDSInfo CCDSInfo::MapFromOrigToEdited(const CAlignMap& amap) const in MapFromOrigToEdited() function in CCDSInfo
702 cds_info = cds_info.MapFromOrigToEdited(mrnamap); in CdsInvariant()
1750 cds_info = cds_info.MapFromOrigToEdited(a.GetAlignMap()); in CollectAttributes()
2028 cds_info = cds_info.MapFromOrigToEdited(a.GetAlignMap()); in printGFF3()
H A Dasn1.cpp87 cds = cds.MapFromOrigToEdited(amap); // all coords on mRNA in SModelData()
H A Dscore.cpp1404 cds_info = cds_info.MapFromOrigToEdited(mrnamap); in GetScore()
H A Dchainer.cpp4595 cds_info = cds_info.MapFromOrigToEdited(mrnamap); in CalculateSupportAndWeightFromMembers()
5014 auto cds_info_t = cds_info.MapFromOrigToEdited(amap); in SetConfirmedEnds()
7569 model.SetCdsInfo(srcmodel.GetCdsInfo().MapFromOrigToEdited(srcmodel.GetAlignMap())); in MapOneModelToOrigContig()
7650 acds = acds.MapFromOrigToEdited(amap); in MapOneModelToEditedContig()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/
H A Dgnomon_model.hpp232 CCDSInfo MapFromOrigToEdited(const CAlignMap& amap) const;