| /dports/biology/seqan1/seqan-1.3.1/apps/razers/ |
| H A D | razers.h | 215 struct MicroRNA{}; struct
1208 MicroRNA) // MaqMapping
1306 return matchVerify(m,inf,rseqNo,readSet,options,MicroRNA());
1734 MicroRNA)
1774 _qgramCountQGrams(TDir &dir, TStringSet &stringSet, TShape &shape, TValue prefixLen, MicroRNA)
1799 void createQGramIndex(TIndex &index, TValue prefixLen, MicroRNA)
1813 _qgramCountQGrams(dir, text, shape, prefixLen,MicroRNA());
1821 _qgramFillSuffixArray(sa, text, shape, dir, nothing, True(), prefixLen, MicroRNA());
1832 _qgramFillSuffixArray(sa, text, shape, dir, nothing, False(),prefixLen, MicroRNA());
1917 createQGramIndex(swiftIndex,options.rnaSeedLength,MicroRNA());
|
| /dports/biology/seqan1/seqan-1.3.1/apps/splazers/ |
| H A D | razers.h | 224 struct MicroRNA{}; struct
1229 MicroRNA) // MaqMapping
1327 return matchVerify(m,inf,rseqNo,readSet,options,MicroRNA());
1755 MicroRNA)
1795 _qgramCountQGrams(TDir &dir, TStringSet &stringSet, TShape &shape, TValue prefixLen, MicroRNA)
1820 void createQGramIndex(TIndex &index, TValue prefixLen, MicroRNA)
1834 _qgramCountQGrams(dir, text, shape, prefixLen,MicroRNA());
1842 _qgramFillSuffixArray(sa, text, shape, dir, nothing, True(), prefixLen, MicroRNA());
1853 _qgramFillSuffixArray(sa, text, shape, dir, nothing, False(),prefixLen, MicroRNA());
1938 createQGramIndex(swiftIndex,options.rnaSeedLength,MicroRNA());
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/splazers/ |
| H A D | razers.h | 244 struct MicroRNA{}; struct
1220 MicroRNA) // MaqMapping
1318 return matchVerify(m,inf,rseqNo,readSet,options,MicroRNA());
1746 MicroRNA)
1785 _qgramCountQGrams(TDir &dir, TStringSet &stringSet, TShape &shape, TValue prefixLen, MicroRNA)
1809 void createQGramIndex(TIndex &index, TValue prefixLen, MicroRNA)
1822 _qgramCountQGrams(dir, text, shape, prefixLen,MicroRNA());
1830 _qgramFillSuffixArray(sa, text, shape, dir, nothing, True(), prefixLen, MicroRNA());
1841 _qgramFillSuffixArray(sa, text, shape, dir, nothing, False(),prefixLen, MicroRNA());
1924 createQGramIndex(swiftIndex,options.rnaSeedLength,MicroRNA());
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/razers/ |
| H A D | razers.h | 233 struct MicroRNA{}; struct
1261 MicroRNA) // MaqMapping
1359 return matchVerify(m,inf,rseqNo,readSet,options,MicroRNA());
1805 MicroRNA)
1844 _qgramCountQGrams(TDir &dir, TStringSet &stringSet, TShape &shape, TValue prefixLen, MicroRNA)
1868 void createQGramIndex(TIndex &index, TValue prefixLen, MicroRNA)
1881 _qgramCountQGrams(dir, text, shape, prefixLen,MicroRNA());
1889 _qgramFillSuffixArray(sa, text, shape, dir, nothing, True(), prefixLen, MicroRNA());
1900 _qgramFillSuffixArray(sa, text, shape, dir, nothing, False(),prefixLen, MicroRNA());
1985 createQGramIndex(swiftIndex,options.rnaSeedLength,MicroRNA());
|
| /dports/biology/seqan1/seqan-1.3.1/apps/razers2/ |
| H A D | razers.h | 199 struct MicroRNA{}; struct
1228 return matchVerify(m,inf,rseqNo,readSet,options,MicroRNA());
|