| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/align/ |
| H A D | global_alignment_specialized.h | 92 MyersHirschberg const & algorithmTag) in globalAlignment()
102 MyersHirschberg const & algorithmTag) in globalAlignment()
163 MyersHirschberg const & algorithmTag) in globalAlignmentScore()
172 MyersHirschberg const & algorithmTag) in globalAlignmentScore()
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| H A D | alignment_algorithm_tags.h | 120 typedef Tag<MyersHirschberg_> MyersHirschberg; typedef
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| H A D | global_alignment_myers_hirschberg_impl.h | 194 MyersHirschberg const & algorithmTag) in _globalAlignment()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align/ |
| H A D | global_alignment_specialized.h | 92 MyersHirschberg const & algorithmTag) in globalAlignment()
102 MyersHirschberg const & algorithmTag) in globalAlignment()
163 MyersHirschberg const & algorithmTag) in globalAlignmentScore()
172 MyersHirschberg const & algorithmTag) in globalAlignmentScore()
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| H A D | alignment_algorithm_tags.h | 120 typedef Tag<MyersHirschberg_> MyersHirschberg; typedef
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| H A D | global_alignment_myers_hirschberg_impl.h | 194 MyersHirschberg const & algorithmTag) in _globalAlignment()
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align/ |
| H A D | global_alignment_specialized.h | 90 MyersHirschberg const & algorithmTag) in globalAlignment()
100 MyersHirschberg const & algorithmTag) in globalAlignment()
161 MyersHirschberg const & algorithmTag) in globalAlignmentScore()
170 MyersHirschberg const & algorithmTag) in globalAlignmentScore()
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| H A D | alignment_algorithm_tags.h | 120 typedef Tag<MyersHirschberg_> MyersHirschberg; typedef
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| H A D | global_alignment_myers_hirschberg_impl.h | 178 MyersHirschberg const & algorithmTag) in _globalAlignment()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/align/ |
| H A D | test_align_global_alignment_specialized.h | 205 int score = globalAlignment(align, MyersHirschberg()); in SEQAN_DEFINE_TEST()
231 int score = globalAlignment(gapsH, gapsV, MyersHirschberg()); in SEQAN_DEFINE_TEST()
311 res = globalAlignmentScore(strH, strV, MyersHirschberg()); in SEQAN_DEFINE_TEST()
314 res = globalAlignmentScore(strings, MyersHirschberg()); in SEQAN_DEFINE_TEST()
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| H A D | test_align_global_alignment_score.h | 275 res = globalAlignmentScore(strH, strV, MyersHirschberg()); in SEQAN_DEFINE_TEST()
278 res = globalAlignmentScore(strings, MyersHirschberg()); in SEQAN_DEFINE_TEST()
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| H A D | test_align_myers.h | 165 hm_score = globalAlignment(s_hm_ali,SimpleScore(), MyersHirschberg()); in SEQAN_DEFINE_TEST()
210 hm_score = globalAlignment(l_hm_ali, SimpleScore(), MyersHirschberg()); in SEQAN_DEFINE_TEST()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/tutorial/a_first_example/ |
| H A D | base.cpp | 22 globalAlignment(align, seqan::MyersHirschberg()); in main()
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| /dports/biology/seqan1/seqan-1.3.1/demos/ |
| H A D | alignment.cpp | 30 ::std::cout << "Score = " << globalAlignment(align, score, MyersHirschberg()) << ::std::endl; in main()
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| /dports/biology/seqan1/seqan-1.3.1/docs/ |
| H A D | alignment.cpp | 20 ::std::cout << "Score = " << globalAlignment(align, score, MyersHirschberg()) << ::std::endl; in main()
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| /dports/biology/seqan1/seqan-1.3.1/seqan/basic/ |
| H A D | basic_tag.h | 153 typedef Tag<MyersHirschberg_> const MyersHirschberg; typedef
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/tutorial/pairwise_sequence_alignment/ |
| H A D | alignment_global_assignment3.cpp | 26 int score = globalAlignment(align, MyersHirschberg()); in main()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/basic/ |
| H A D | test_basic_array_constructor_destruct.h | 71 SEQAN_TAG_INSTANCE_TEST(MyersHirschberg); in SEQAN_DEFINE_TEST()
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| H A D | test_basic_tag.h | 121 MyersHirschberg tag9; in SEQAN_DEFINE_TEST()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/manual/source/Tutorial/GettingStarted/ |
| H A D | AFirstExample.rst | 423 Having a closer look you will notice that there is a default constructor call (``MyersHirschberg()`…
425 The ``MyersHirschberg()`` `` is only a tag to determine which specialisation of the ``globalAligmen…
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/manual/source/Tutorial/Algorithms/Alignment/ |
| H A D | PairwiseSequenceAlignment.rst | 236 MyersHirschberg
237 …The MyersHirschberg is an combination of the rapid MyersBitVector and the space efficient Hirschbe…
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| /dports/biology/seqan1/seqan-1.3.1/seqan/align/ |
| H A D | align_myers.h | 373 MyersHirschberg) in globalAlignment() argument
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| H A D | align_generated_forwards.h | 694 …(Align<TSource, TSpec> & align_, Score<TScoreValue, Simple> const &, MyersHirschberg); // "…
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| /dports/biology/seqan/seqan-library-2.4.0/share/doc/seqan/ |
| H A D | CHANGELOG.rst | 210 - fixes MyersHirschberg implementation.
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/ |
| H A D | CHANGELOG.rst | 210 - fixes MyersHirschberg implementation.
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