Searched refs:NGS_ALIGNMENT (Results 1 – 10 of 10) sorted by relevance
| /dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/ |
| H A D | NGS_Alignment.h | 31 #ifndef NGS_ALIGNMENT
32 #define NGS_ALIGNMENT NGS_Alignment macro
36 #define NGS_FRAGMENT NGS_ALIGNMENT
165 struct NGS_String* ( * getId ) ( NGS_ALIGNMENT* self, ctx_t ctx );
166 struct NGS_String* ( * getReferenceSpec ) ( NGS_ALIGNMENT* self, ctx_t ctx );
167 int ( * getMappingQuality ) ( NGS_ALIGNMENT* self, ctx_t ctx );
168 INSDC_read_filter ( * getReadFilter ) ( NGS_ALIGNMENT* self, ctx_t ctx );
169 struct NGS_String* ( * getReferenceBases ) ( NGS_ALIGNMENT* self, ctx_t ctx );
170 struct NGS_String* ( * getReadGroup ) ( NGS_ALIGNMENT* self, ctx_t ctx );
171 struct NGS_String* ( * getReadId ) ( NGS_ALIGNMENT* self, ctx_t ctx );
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| H A D | NGS_Alignment.c | 835 static int64_t NullAlignment_toI64 ( NGS_ALIGNMENT* self, ctx_t ctx ) in NullAlignment_toI64()
842 static struct NGS_String* NullAlignment_toString ( NGS_ALIGNMENT* self, ctx_t ctx ) in NullAlignment_toString()
849 static int NullAlignment_toInt ( NGS_ALIGNMENT* self, ctx_t ctx ) in NullAlignment_toInt()
856 static struct NGS_String* NullAlignment_boolToString ( NGS_ALIGNMENT* self, ctx_t ctx, bool b ) in NullAlignment_boolToString()
863 static bool NullAlignment_toBool ( NGS_ALIGNMENT* self, ctx_t ctx ) in NullAlignment_toBool()
870 static uint8_t NullAlignment_toU8 ( NGS_ALIGNMENT* self, ctx_t ctx ) in NullAlignment_toU8()
877 static uint64_t NullAlignment_toU64 ( NGS_ALIGNMENT* self, ctx_t ctx ) in NullAlignment_toU64()
884 static int NullAlignment_boolToInt ( NGS_ALIGNMENT* self, ctx_t ctx, bool b ) in NullAlignment_boolToInt()
891 static NGS_ALIGNMENT* NullAlignment_toAlignment ( NGS_ALIGNMENT* self, ctx_t ctx ) in NullAlignment_toAlignment()
898 static bool NullAlignment_noNext( NGS_ALIGNMENT* self, ctx_t ctx ) in NullAlignment_noNext()
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| H A D | CSRA1_Alignment.c | 30 #define NGS_ALIGNMENT CSRA1_Alignment macro
1165 void CSRA1_AlignmentInit ( NGS_ALIGNMENT* ref, in CSRA1_AlignmentInit()
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| H A D | BAM_Alignment.c | 30 #define NGS_ALIGNMENT void macro
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| H A D | CSRA1_ReferenceWindow.c | 30 #define NGS_ALIGNMENT CSRA1_ReferenceWindow macro
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| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/ngs/ |
| H A D | NGS_Alignment.h | 31 #ifndef NGS_ALIGNMENT
32 #define NGS_ALIGNMENT NGS_Alignment macro
36 #define NGS_FRAGMENT NGS_ALIGNMENT
165 struct NGS_String* ( * getId ) ( NGS_ALIGNMENT* self, ctx_t ctx );
166 struct NGS_String* ( * getReferenceSpec ) ( NGS_ALIGNMENT* self, ctx_t ctx );
167 int ( * getMappingQuality ) ( NGS_ALIGNMENT* self, ctx_t ctx );
168 INSDC_read_filter ( * getReadFilter ) ( NGS_ALIGNMENT* self, ctx_t ctx );
169 struct NGS_String* ( * getReferenceBases ) ( NGS_ALIGNMENT* self, ctx_t ctx );
170 struct NGS_String* ( * getReadGroup ) ( NGS_ALIGNMENT* self, ctx_t ctx );
171 struct NGS_String* ( * getReadId ) ( NGS_ALIGNMENT* self, ctx_t ctx );
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| H A D | NGS_Alignment.c | 835 static int64_t NullAlignment_toI64 ( NGS_ALIGNMENT* self, ctx_t ctx ) in NullAlignment_toI64()
842 static struct NGS_String* NullAlignment_toString ( NGS_ALIGNMENT* self, ctx_t ctx ) in NullAlignment_toString()
849 static int NullAlignment_toInt ( NGS_ALIGNMENT* self, ctx_t ctx ) in NullAlignment_toInt()
856 static struct NGS_String* NullAlignment_boolToString ( NGS_ALIGNMENT* self, ctx_t ctx, bool b ) in NullAlignment_boolToString()
863 static bool NullAlignment_toBool ( NGS_ALIGNMENT* self, ctx_t ctx ) in NullAlignment_toBool()
870 static uint8_t NullAlignment_toU8 ( NGS_ALIGNMENT* self, ctx_t ctx ) in NullAlignment_toU8()
877 static uint64_t NullAlignment_toU64 ( NGS_ALIGNMENT* self, ctx_t ctx ) in NullAlignment_toU64()
884 static int NullAlignment_boolToInt ( NGS_ALIGNMENT* self, ctx_t ctx, bool b ) in NullAlignment_boolToInt()
891 static NGS_ALIGNMENT* NullAlignment_toAlignment ( NGS_ALIGNMENT* self, ctx_t ctx ) in NullAlignment_toAlignment()
898 static bool NullAlignment_noNext( NGS_ALIGNMENT* self, ctx_t ctx ) in NullAlignment_noNext()
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| H A D | CSRA1_Alignment.c | 30 #define NGS_ALIGNMENT CSRA1_Alignment macro
1165 void CSRA1_AlignmentInit ( NGS_ALIGNMENT* ref, in CSRA1_AlignmentInit()
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| H A D | BAM_Alignment.c | 30 #define NGS_ALIGNMENT void macro
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| H A D | CSRA1_ReferenceWindow.c | 30 #define NGS_ALIGNMENT CSRA1_ReferenceWindow macro
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