| /dports/biology/abyss/abyss-2.3.1/Assembly/ |
| H A D | Options.cc | 157 enum { OPT_HELP = 1, OPT_VERSION, COVERAGE_HIST, OPT_DB, OPT_LIBRARY, OPT_STRAIN, OPT_SPECIES, OPT_… enumerator
190 { "species", required_argument, NULL, OPT_SPECIES },
310 case OPT_SPECIES: in parse()
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| /dports/biology/abyss/abyss-2.3.1/AdjList/ |
| H A D | AdjList.cpp | 95 enum { OPT_HELP = 1, OPT_VERSION, OPT_DB, OPT_LIBRARY, OPT_STRAIN, OPT_SPECIES }; enumerator
118 { "species", required_argument, NULL, OPT_SPECIES },
358 case OPT_SPECIES: in main()
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| /dports/biology/abyss/abyss-2.3.1/ParseAligns/ |
| H A D | abyss-fixmate.cc | 84 OPT_SPECIES enumerator
101 { "species", required_argument, NULL, OPT_SPECIES },
422 case OPT_SPECIES: in main()
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| /dports/biology/abyss/abyss-2.3.1/DistanceEst/ |
| H A D | DistanceEst.cpp | 118 OPT_DB, OPT_LIBRARY, OPT_STRAIN, OPT_SPECIES enumerator
150 { "species", required_argument, NULL, OPT_SPECIES },
472 case OPT_SPECIES: in main()
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| /dports/biology/abyss/abyss-2.3.1/MergePaths/ |
| H A D | MergeContigs.cpp | 112 OPT_SPECIES enumerator
135 { "species", required_argument, NULL, OPT_SPECIES },
485 case OPT_SPECIES: in main()
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| H A D | PathConsensus.cpp | 114 enum { OPT_HELP = 1, OPT_VERSION, OPT_DB, OPT_LIBRARY, OPT_STRAIN, OPT_SPECIES }; enumerator
142 { "species", required_argument, NULL, OPT_SPECIES },
811 case OPT_SPECIES: in main()
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| H A D | MergePaths.cpp | 107 OPT_SPECIES enumerator
125 { "species", required_argument, NULL, OPT_SPECIES },
972 case OPT_SPECIES: in main()
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| /dports/biology/abyss/abyss-2.3.1/Map/ |
| H A D | map.cc | 126 OPT_DB, OPT_LIBRARY, OPT_STRAIN, OPT_SPECIES, enumerator
156 { "species", required_argument, NULL, OPT_SPECIES },
620 case OPT_SPECIES: in main()
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| /dports/biology/abyss/abyss-2.3.1/PathOverlap/ |
| H A D | PathOverlap.cpp | 118 OPT_SPECIES enumerator
144 { "species", required_argument, NULL, OPT_SPECIES },
623 case OPT_SPECIES: in main()
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| /dports/biology/abyss/abyss-2.3.1/SimpleGraph/ |
| H A D | SimpleGraph.cpp | 94 OPT_DB, OPT_LIBRARY, OPT_STRAIN, OPT_SPECIES }; enumerator
115 { "species", required_argument, NULL, OPT_SPECIES },
157 case OPT_SPECIES: in main()
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| /dports/biology/abyss/abyss-2.3.1/Scaffold/ |
| H A D | scaffold.cc | 146 OPT_SPECIES enumerator
177 { "species", required_argument, NULL, OPT_SPECIES },
1078 case OPT_SPECIES: in main()
|