/dports/biology/bamutil/bamUtil-1.0.15/test/testFiles/ |
H A D | testRecab51.sam | 1 1 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> OQ:Z:!<<<< RG:Z:rg1 2 2 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> OQ:Z:!<<<< RG:Z:rg1 3 3 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> OQ:Z:!<<<< RG:Z:rg1 4 4 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> OQ:Z:!<<<< RG:Z:rg1 5 5 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> OQ:Z:!<<<< RG:Z:rg1 6 6 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> OQ:Z:!<<<< RG:Z:rg1 7 7 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> OQ:Z:!<<<< RG:Z:rg1 8 8 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> OQ:Z:!<<<< RG:Z:rg1 9 9 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> OQ:Z:!<<<< RG:Z:rg1 10 10 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> OQ:Z:!<<<< RG:Z:rg1 [all …]
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H A D | testRecab.sam | 5 1 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< 6 2 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< 7 3 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< 8 4 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< 9 5 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< 10 6 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< 11 7 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< 12 8 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< 13 9 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< 14 10 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< [all …]
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H A D | testRecabBad.sam | 5 1 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< 6 2 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< 7 3 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< 8 4 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< 9 5 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< 10 6 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< 11 7 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< 12 8 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< 13 9 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< 14 10 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< [all …]
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H A D | testRecab2.sam | 5 1 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< 6 2 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< 7 3 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< 8 4 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< 9 5 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< 10 6 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< 11 7 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< 12 8 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< 13 9 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< 14 10 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<< [all …]
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H A D | squeeze.sam | 29 1:1011:F:255+17M15D20M 73 1 1011 0 5M2D = 1011 0 CCGAA 6>6+4 XT:A:R AM:i:0 NM:i:0 MD:Z:37 OQ:Z:1234… 31 18:462+29M5I3M:F:295 1121 1 75 0 5M 18 757 0 ACGTN ;>>>> XT:A:R AM:i:0 OQ:Z:12345dfs NM:i:2 MD:Z:30… 32 18:462+29M5I3M:F:295 97 1 75 0 * 18 757 0 * * OQ:Z:12345dfs AM:i:0 33 18:462+29M5I3M:F:295 97 2 75 0 5M 18 757 0 ACGTN * XT:A:R OQ:Z:12345dfs AM:i:0 NM:i:2 MD:Z:30A0C5 35 18:462+29M5I3M:F:296 97 1 1751 0 3S2H5M 18 757 0 TGCACGTN 453;>>>> OQ:Z:12345dfs 38 18:462+29M5I3M:F:295 97 1 75 0 5M 18 757 0 ACGTN ;>>>> XT:A:R AM:i:0 OQ:Z:12345dfs NM:i:2 MD:Z:30A0… 39 18:462+29M5I3M:F:298 97 3 75 0 3S5M4H 18 757 0 tgcacgtn 453;>>>> OQ:Z:12345dfs 41 1:1011:F:255+17M15D20M 1097 1 1011 0 5M2D = 1011 0 CCGAA 6>6+4 XT:A:R AM:i:0 NM:i:0 MD:Z:37 OQ:Z:12…
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/dports/biology/bamutil/bamUtil-1.0.15/test/expected/ |
H A D | testRecabMaxQual49.sam | 1 1 0 1 10021 10 5M = 10 0 ACCCT QRRQQ OQ:Z:!<<<< RG:Z:rg1 2 2 0 1 10021 10 5M = 10 0 ACCCT QRRQQ OQ:Z:!<<<< RG:Z:rg1 3 3 0 1 10021 10 5M = 10 0 ACCCT QRRQQ OQ:Z:!<<<< RG:Z:rg1 4 4 0 1 10021 10 5M = 10 0 ACCCT QRRQQ OQ:Z:!<<<< RG:Z:rg1 5 5 0 1 10021 10 5M = 10 0 ACCCT QRRQQ OQ:Z:!<<<< RG:Z:rg1 6 6 0 1 10021 10 5M = 10 0 ACCCT QRRQQ OQ:Z:!<<<< RG:Z:rg1 7 7 0 1 10021 10 5M = 10 0 ACCCT QRRQQ OQ:Z:!<<<< RG:Z:rg1 8 8 0 1 10021 10 5M = 10 0 ACCCT QRRQQ OQ:Z:!<<<< RG:Z:rg1 9 9 0 1 10021 10 5M = 10 0 ACCCT QRRQQ OQ:Z:!<<<< RG:Z:rg1 10 10 0 1 10021 10 5M = 10 0 ACCCT QRRQQ OQ:Z:!<<<< RG:Z:rg1 [all …]
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H A D | testRecabMaxQual50.sam | 1 1 0 1 10021 10 5M = 10 0 ACCCT QSSQQ OQ:Z:!<<<< RG:Z:rg1 2 2 0 1 10021 10 5M = 10 0 ACCCT QSSQQ OQ:Z:!<<<< RG:Z:rg1 3 3 0 1 10021 10 5M = 10 0 ACCCT QSSQQ OQ:Z:!<<<< RG:Z:rg1 4 4 0 1 10021 10 5M = 10 0 ACCCT QSSQQ OQ:Z:!<<<< RG:Z:rg1 5 5 0 1 10021 10 5M = 10 0 ACCCT QSSQQ OQ:Z:!<<<< RG:Z:rg1 6 6 0 1 10021 10 5M = 10 0 ACCCT QSSQQ OQ:Z:!<<<< RG:Z:rg1 7 7 0 1 10021 10 5M = 10 0 ACCCT QSSQQ OQ:Z:!<<<< RG:Z:rg1 8 8 0 1 10021 10 5M = 10 0 ACCCT QSSQQ OQ:Z:!<<<< RG:Z:rg1 9 9 0 1 10021 10 5M = 10 0 ACCCT QSSQQ OQ:Z:!<<<< RG:Z:rg1 10 10 0 1 10021 10 5M = 10 0 ACCCT QSSQQ OQ:Z:!<<<< RG:Z:rg1 [all …]
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H A D | testRecabMaxQual51.sam | 1 1 0 1 10021 10 5M = 10 0 ACCCT QTTQQ OQ:Z:!<<<< RG:Z:rg1 2 2 0 1 10021 10 5M = 10 0 ACCCT QTTQQ OQ:Z:!<<<< RG:Z:rg1 3 3 0 1 10021 10 5M = 10 0 ACCCT QTTQQ OQ:Z:!<<<< RG:Z:rg1 4 4 0 1 10021 10 5M = 10 0 ACCCT QTTQQ OQ:Z:!<<<< RG:Z:rg1 5 5 0 1 10021 10 5M = 10 0 ACCCT QTTQQ OQ:Z:!<<<< RG:Z:rg1 6 6 0 1 10021 10 5M = 10 0 ACCCT QTTQQ OQ:Z:!<<<< RG:Z:rg1 7 7 0 1 10021 10 5M = 10 0 ACCCT QTTQQ OQ:Z:!<<<< RG:Z:rg1 8 8 0 1 10021 10 5M = 10 0 ACCCT QTTQQ OQ:Z:!<<<< RG:Z:rg1 9 9 0 1 10021 10 5M = 10 0 ACCCT QTTQQ OQ:Z:!<<<< RG:Z:rg1 10 10 0 1 10021 10 5M = 10 0 ACCCT QTTQQ OQ:Z:!<<<< RG:Z:rg1 [all …]
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H A D | testRecabMinQual28.sam | 1 1 0 1 10021 10 5M = 10 0 ACCCT ;SSQQ OQ:Z:!<<<< RG:Z:rg1 2 2 0 1 10021 10 5M = 10 0 ACCCT ;SSQQ OQ:Z:!<<<< RG:Z:rg1 3 3 0 1 10021 10 5M = 10 0 ACCCT ;SSQQ OQ:Z:!<<<< RG:Z:rg1 4 4 0 1 10021 10 5M = 10 0 ACCCT ;SSQQ OQ:Z:!<<<< RG:Z:rg1 5 5 0 1 10021 10 5M = 10 0 ACCCT ;SSQQ OQ:Z:!<<<< RG:Z:rg1 6 6 0 1 10021 10 5M = 10 0 ACCCT ;SSQQ OQ:Z:!<<<< RG:Z:rg1 7 7 0 1 10021 10 5M = 10 0 ACCCT ;SSQQ OQ:Z:!<<<< RG:Z:rg1 8 8 0 1 10021 10 5M = 10 0 ACCCT ;SSQQ OQ:Z:!<<<< RG:Z:rg1 9 9 0 1 10021 10 5M = 10 0 ACCCT ;SSQQ OQ:Z:!<<<< RG:Z:rg1 10 10 0 1 10021 10 5M = 10 0 ACCCT ;SSQQ OQ:Z:!<<<< RG:Z:rg1 [all …]
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H A D | testRecab.sam | 5 1 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:!<<<< RG:Z:rg1 6 2 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:!<<<< RG:Z:rg1 7 3 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:!<<<< RG:Z:rg1 8 4 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:!<<<< RG:Z:rg1 9 5 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:!<<<< RG:Z:rg1 10 6 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:!<<<< RG:Z:rg1 11 7 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:!<<<< RG:Z:rg1 12 8 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:!<<<< RG:Z:rg1 13 9 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:!<<<< RG:Z:rg1 14 10 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:!<<<< RG:Z:rg1 [all …]
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H A D | testRecabBin21.sam | 5 1 0 1 10021 10 5M = 10 0 ACCCT /66// OQ:Z:!<<<< RG:Z:rg1 6 2 0 1 10021 10 5M = 10 0 ACCCT /66// OQ:Z:!<<<< RG:Z:rg1 7 3 0 1 10021 10 5M = 10 0 ACCCT /66// OQ:Z:!<<<< RG:Z:rg1 8 4 0 1 10021 10 5M = 10 0 ACCCT /66// OQ:Z:!<<<< RG:Z:rg1 9 5 0 1 10021 10 5M = 10 0 ACCCT /66// OQ:Z:!<<<< RG:Z:rg1 10 6 0 1 10021 10 5M = 10 0 ACCCT /66// OQ:Z:!<<<< RG:Z:rg1 11 7 0 1 10021 10 5M = 10 0 ACCCT /66// OQ:Z:!<<<< RG:Z:rg1 12 8 0 1 10021 10 5M = 10 0 ACCCT /66// OQ:Z:!<<<< RG:Z:rg1 13 9 0 1 10021 10 5M = 10 0 ACCCT /66// OQ:Z:!<<<< RG:Z:rg1 14 10 0 1 10021 10 5M = 10 0 ACCCT /66// OQ:Z:!<<<< RG:Z:rg1 [all …]
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H A D | testRecabDBSNP.sam | 5 1 0 1 10021 10 5M = 10 0 ACCCT 5>$5> OQ:Z:!<<<< RG:Z:rg1 6 2 0 1 10021 10 5M = 10 0 ACCCT 5>$5> OQ:Z:!<<<< RG:Z:rg1 7 3 0 1 10021 10 5M = 10 0 ACCCT 5>$5> OQ:Z:!<<<< RG:Z:rg1 8 4 0 1 10021 10 5M = 10 0 ACCCT 5>$5> OQ:Z:!<<<< RG:Z:rg1 9 5 0 1 10021 10 5M = 10 0 ACCCT 5>$5> OQ:Z:!<<<< RG:Z:rg1 10 6 0 1 10021 10 5M = 10 0 ACCCT 5>$5> OQ:Z:!<<<< RG:Z:rg1 11 7 0 1 10021 10 5M = 10 0 ACCCT 5>$5> OQ:Z:!<<<< RG:Z:rg1 12 8 0 1 10021 10 5M = 10 0 ACCCT 5>$5> OQ:Z:!<<<< RG:Z:rg1 13 9 0 1 10021 10 5M = 10 0 ACCCT 5>$5> OQ:Z:!<<<< RG:Z:rg1 14 10 0 1 10021 10 5M = 10 0 ACCCT 5>$5> OQ:Z:!<<<< RG:Z:rg1 [all …]
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H A D | testRecabDBSNPkeepPrev.sam | 5 1 0 1 10021 10 5M = 10 0 ACCCT 5$55! OQ:Z:!<<<< RG:Z:rg1 6 2 0 1 10021 10 5M = 10 0 ACCCT 5$55! OQ:Z:!<<<< RG:Z:rg1 7 3 0 1 10021 10 5M = 10 0 ACCCT 5$55! OQ:Z:!<<<< RG:Z:rg1 8 4 0 1 10021 10 5M = 10 0 ACCCT 5$55! OQ:Z:!<<<< RG:Z:rg1 9 5 0 1 10021 10 5M = 10 0 ACCCT 5$55! OQ:Z:!<<<< RG:Z:rg1 10 6 0 1 10021 10 5M = 10 0 ACCCT 5$55! OQ:Z:!<<<< RG:Z:rg1 11 7 0 1 10021 10 5M = 10 0 ACCCT 5$55! OQ:Z:!<<<< RG:Z:rg1 12 8 0 1 10021 10 5M = 10 0 ACCCT 5$55! OQ:Z:!<<<< RG:Z:rg1 13 9 0 1 10021 10 5M = 10 0 ACCCT 5$55! OQ:Z:!<<<< RG:Z:rg1 14 10 0 1 10021 10 5M = 10 0 ACCCT 5$55! OQ:Z:!<<<< RG:Z:rg1 [all …]
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H A D | testRecabBin.sam | 5 1 0 1 10021 10 5M = 10 0 ACCCT /77// OQ:Z:!<<<< RG:Z:rg1 6 2 0 1 10021 10 5M = 10 0 ACCCT /77// OQ:Z:!<<<< RG:Z:rg1 7 3 0 1 10021 10 5M = 10 0 ACCCT /77// OQ:Z:!<<<< RG:Z:rg1 8 4 0 1 10021 10 5M = 10 0 ACCCT /77// OQ:Z:!<<<< RG:Z:rg1 9 5 0 1 10021 10 5M = 10 0 ACCCT /77// OQ:Z:!<<<< RG:Z:rg1 10 6 0 1 10021 10 5M = 10 0 ACCCT /77// OQ:Z:!<<<< RG:Z:rg1 11 7 0 1 10021 10 5M = 10 0 ACCCT /77// OQ:Z:!<<<< RG:Z:rg1 12 8 0 1 10021 10 5M = 10 0 ACCCT /77// OQ:Z:!<<<< RG:Z:rg1 13 9 0 1 10021 10 5M = 10 0 ACCCT /77// OQ:Z:!<<<< RG:Z:rg1 14 10 0 1 10021 10 5M = 10 0 ACCCT /77// OQ:Z:!<<<< RG:Z:rg1 [all …]
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H A D | testRecabBin19.sam | 5 1 0 1 10021 10 5M = 10 0 ACCCT /44// OQ:Z:!<<<< RG:Z:rg1 6 2 0 1 10021 10 5M = 10 0 ACCCT /44// OQ:Z:!<<<< RG:Z:rg1 7 3 0 1 10021 10 5M = 10 0 ACCCT /44// OQ:Z:!<<<< RG:Z:rg1 8 4 0 1 10021 10 5M = 10 0 ACCCT /44// OQ:Z:!<<<< RG:Z:rg1 9 5 0 1 10021 10 5M = 10 0 ACCCT /44// OQ:Z:!<<<< RG:Z:rg1 10 6 0 1 10021 10 5M = 10 0 ACCCT /44// OQ:Z:!<<<< RG:Z:rg1 11 7 0 1 10021 10 5M = 10 0 ACCCT /44// OQ:Z:!<<<< RG:Z:rg1 12 8 0 1 10021 10 5M = 10 0 ACCCT /44// OQ:Z:!<<<< RG:Z:rg1 13 9 0 1 10021 10 5M = 10 0 ACCCT /44// OQ:Z:!<<<< RG:Z:rg1 14 10 0 1 10021 10 5M = 10 0 ACCCT /44// OQ:Z:!<<<< RG:Z:rg1 [all …]
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H A D | testRecabStoreQ.sam | 5 1 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:;>>>> RG:Z:rg1 6 2 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:;>>>> RG:Z:rg1 7 3 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:;>>>> RG:Z:rg1 8 4 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:;>>>> RG:Z:rg1 9 5 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:;>>>> RG:Z:rg1 10 6 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:;>>>> RG:Z:rg1 11 7 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:;>>>> RG:Z:rg1 12 8 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:;>>>> RG:Z:rg1 13 9 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:;>>>> RG:Z:rg1 14 10 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:;>>>> RG:Z:rg1 [all …]
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H A D | testRecabUseBadOQ.sam | 5 1 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 6 2 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 7 3 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 8 4 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 9 5 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 10 6 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 11 7 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 12 8 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 13 9 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 14 10 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 [all …]
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H A D | testRecabUseOQ.sam | 5 1 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 6 2 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 7 3 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 8 4 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 9 5 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 10 6 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 11 7 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 12 8 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 13 9 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 14 10 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 [all …]
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H A D | testRecabUseStoreOQ.sam | 5 1 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 6 2 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 7 3 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 8 4 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 9 5 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 10 6 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 11 7 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 12 8 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 13 9 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 14 10 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1 [all …]
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H A D | testRecab2Keep.sam | 5 1 0 1 10021 10 5M = 10 0 ACCCT 2250. OQ:Z:!<<<< RG:Z:rg1 6 2 0 1 10021 10 5M = 10 0 ACCCT 2250. OQ:Z:!<<<< RG:Z:rg1 7 3 0 1 10021 10 5M = 10 0 ACCCT 2250. OQ:Z:!<<<< RG:Z:rg1 8 4 0 1 10021 10 5M = 10 0 ACCCT 2250. OQ:Z:!<<<< RG:Z:rg1 9 5 0 1 10021 10 5M = 10 0 ACCCT 2250. OQ:Z:!<<<< RG:Z:rg1 10 6 0 1 10021 10 5M = 10 0 ACCCT 2250. OQ:Z:!<<<< RG:Z:rg1 11 7 0 1 10021 10 5M = 10 0 ACCCT 2250. OQ:Z:!<<<< RG:Z:rg1 12 8 0 1 10021 10 5M = 10 0 ACCCT 2250. OQ:Z:!<<<< RG:Z:rg1 13 9 0 1 10021 10 5M = 10 0 ACCCT 2250. OQ:Z:!<<<< RG:Z:rg1 14 10 0 1 10021 10 5M = 10 0 ACCCT 2250. OQ:Z:!<<<< RG:Z:rg1 [all …]
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H A D | testRecab2.sam | 5 1 0 1 10021 10 5M = 10 0 ACCCT 25500 OQ:Z:!<<<< RG:Z:rg1 6 2 0 1 10021 10 5M = 10 0 ACCCT 25500 OQ:Z:!<<<< RG:Z:rg1 7 3 0 1 10021 10 5M = 10 0 ACCCT 25500 OQ:Z:!<<<< RG:Z:rg1 8 4 0 1 10021 10 5M = 10 0 ACCCT 25500 OQ:Z:!<<<< RG:Z:rg1 9 5 0 1 10021 10 5M = 10 0 ACCCT 25500 OQ:Z:!<<<< RG:Z:rg1 10 6 0 1 10021 10 5M = 10 0 ACCCT 25500 OQ:Z:!<<<< RG:Z:rg1 11 7 0 1 10021 10 5M = 10 0 ACCCT 25500 OQ:Z:!<<<< RG:Z:rg1 12 8 0 1 10021 10 5M = 10 0 ACCCT 25500 OQ:Z:!<<<< RG:Z:rg1 13 9 0 1 10021 10 5M = 10 0 ACCCT 25500 OQ:Z:!<<<< RG:Z:rg1 14 10 0 1 10021 10 5M = 10 0 ACCCT 25500 OQ:Z:!<<<< RG:Z:rg1 [all …]
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/dports/biology/gatk/gatk-4.2.0.0/src/test/resources/org/broadinstitute/hellbender/tools/walkers/varianteval/VariantEval/ |
H A D | NA12878.hg19.HiSeq.WGS.cleaned.ug.snpfiltered.indelfiltered.optimized.cut.subset.vcf | 28 ##INFO=<ID=OQ,Number=1,Type=Float,Description="The original variant quality score"> 65 …C=1;AF=0.50;AN=2;DP=51;Dels=0.00;HRun=0;HaplotypeScore=1.72;MQ=60.87;MQ0=0;OQ=817.22;QD=15.13;SB=-… 119 …C=1;AF=0.50;AN=2;DP=10;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=60.00;MQ0=0;OQ=130.84;QD=11.89;SB=-… 126 …C=1;AF=0.50;AN=2;DP=84;Dels=0.00;HRun=0;HaplotypeScore=0.93;MQ=59.56;MQ0=0;OQ=1618.74;QD=19.04;SB=… 149 …C=1;AF=0.50;AN=2;DP=84;Dels=0.00;HRun=0;HaplotypeScore=0.79;MQ=60.00;MQ0=0;OQ=1103.68;QD=13.14;SB=… 156 …C=1;AF=0.50;AN=2;DP=77;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.76;MQ0=0;OQ=928.77;QD=12.06;SB=-… 168 …C=2;AF=1.00;AN=2;DP=77;Dels=0.00;HRun=0;HaplotypeScore=0.99;MQ=59.70;MQ0=0;OQ=2702.25;QD=35.09;SB=… 177 …C=1;AF=0.50;AN=2;DP=79;Dels=0.00;HRun=0;HaplotypeScore=0.79;MQ=60.00;MQ0=0;OQ=1175.95;QD=14.89;SB=… 225 …C=1;AF=0.50;AN=2;DP=13;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=54.32;MQ0=0;OQ=159.94;QD=12.30;SB=-… 226 …AC=1;AF=0.50;AN=2;DP=5;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=44.10;MQ0=0;OQ=64.00;QD=12.80;SB=-1… [all …]
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/dports/biology/gatk/gatk-4.2.0.0/src/test/resources/org/broadinstitute/hellbender/tools/LeftAlignIndels/ |
H A D | left-aligned.sam | 16 …######################################### PG:Z:MarkDuplicates RG:Z:C09DF.1 OQ:Z:##################… 29 …######################################### PG:Z:MarkDuplicates RG:Z:C09DF.1 OQ:Z::;:+++22A+2+A2,<2+… 30 …######################################### PG:Z:MarkDuplicates RG:Z:C09DF.2 OQ:Z:-;;@##############… 33 …######################################### PG:Z:MarkDuplicates RG:Z:D0EN0.7 OQ:Z:##################… 34 …######################################### PG:Z:MarkDuplicates RG:Z:D0EN0.4 OQ:Z:##################… 36 …######################################### PG:Z:MarkDuplicates RG:Z:D0EN0.8 OQ:Z:##################… 37 …######################################### PG:Z:MarkDuplicates RG:Z:D0EN0.7 OQ:Z:+1:+?D:,A#########… 38 …######################################### PG:Z:MarkDuplicates RG:Z:C09DF.1 OQ:Z:++:++=+++=+C2++2+2… 48 …######################################### PG:Z:MarkDuplicates RG:Z:C09DF.2 OQ:Z:##################… 51 …######################################### PG:Z:MarkDuplicates RG:Z:C09DF.1 OQ:Z:##################… [all …]
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H A D | non-aligned.sam | 16 …######################################### PG:Z:MarkDuplicates RG:Z:C09DF.1 OQ:Z:##################… 29 …######################################### PG:Z:MarkDuplicates RG:Z:C09DF.1 OQ:Z::;:+++22A+2+A2,<2+… 30 …######################################### PG:Z:MarkDuplicates RG:Z:C09DF.2 OQ:Z:-;;@##############… 33 …######################################### PG:Z:MarkDuplicates RG:Z:D0EN0.7 OQ:Z:##################… 34 …######################################### PG:Z:MarkDuplicates RG:Z:D0EN0.4 OQ:Z:##################… 36 …######################################### PG:Z:MarkDuplicates RG:Z:D0EN0.8 OQ:Z:##################… 37 …######################################### PG:Z:MarkDuplicates RG:Z:D0EN0.7 OQ:Z:+1:+?D:,A#########… 38 …######################################### PG:Z:MarkDuplicates RG:Z:C09DF.1 OQ:Z:++:++=+++=+C2++2+2… 48 …######################################### PG:Z:MarkDuplicates RG:Z:C09DF.2 OQ:Z:##################… 51 …######################################### PG:Z:MarkDuplicates RG:Z:C09DF.1 OQ:Z:##################… [all …]
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/dports/biology/gatk/gatk-4.2.0.0/src/test/resources/org/broadinstitute/hellbender/engine/ |
H A D | CEUTrio.HiSeq.WGS.b37.NA12878.20.21.10000000-10000020.with.unmapped.queryname.samtools.sam | 24 …##################################################### XC:i:35 RG:Z:20FUK.1 OQ:Z:##################… 25 …##################################################### XC:i:35 RG:Z:20FUK.1 OQ:Z:##################… 26 …##################################################### XC:i:35 RG:Z:20FUK.1 OQ:Z:##################… 27 …##################################################### XC:i:35 RG:Z:20FUK.1 OQ:Z:##################… 28 …GGG;GE?FHGGGFGGGGHAGGGCGAGHHGGGED@GCGDGGEGBGFGGEF@AHEFHFFFGFC RG:Z:20FUK.1 OQ:Z:HHHHHHHHHHHHHHHHHG… 29 …GHGGGGGFFGGHHGGFHGFHGGFHGGGGGGGGBECCHHGHGGGEGDGHGGGGEGEHGAFG; RG:Z:20FUK.1 OQ:Z:HHHHHHHHHHHHHHHHHH… 30 …##################################################### XC:i:35 RG:Z:20FUK.1 OQ:Z:##################… 31 …##################################################### XC:i:35 RG:Z:20FUK.1 OQ:Z:##################… 32 …##################################################### XC:i:35 RG:Z:20FUK.1 OQ:Z:##################… 33 …##################################################### XC:i:35 RG:Z:20FUK.1 OQ:Z:##################… [all …]
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