Home
last modified time | relevance | path

Searched refs:OQ (Results 1 – 25 of 1172) sorted by relevance

12345678910>>...47

/dports/biology/bamutil/bamUtil-1.0.15/test/testFiles/
H A DtestRecab51.sam1 1 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> OQ:Z:!<<<< RG:Z:rg1
2 2 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> OQ:Z:!<<<< RG:Z:rg1
3 3 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> OQ:Z:!<<<< RG:Z:rg1
4 4 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> OQ:Z:!<<<< RG:Z:rg1
5 5 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> OQ:Z:!<<<< RG:Z:rg1
6 6 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> OQ:Z:!<<<< RG:Z:rg1
7 7 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> OQ:Z:!<<<< RG:Z:rg1
8 8 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> OQ:Z:!<<<< RG:Z:rg1
9 9 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> OQ:Z:!<<<< RG:Z:rg1
10 10 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> OQ:Z:!<<<< RG:Z:rg1
[all …]
H A DtestRecab.sam5 1 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
6 2 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
7 3 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
8 4 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
9 5 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
10 6 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
11 7 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
12 8 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
13 9 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
14 10 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
[all …]
H A DtestRecabBad.sam5 1 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
6 2 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
7 3 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
8 4 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
9 5 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
10 6 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
11 7 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
12 8 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
13 9 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
14 10 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
[all …]
H A DtestRecab2.sam5 1 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
6 2 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
7 3 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
8 4 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
9 5 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
10 6 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
11 7 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
12 8 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
13 9 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
14 10 0 1 10021 10 5M 1 10 0 ACCCT ;>>>> RG:Z:rg1 OQ:Z:!<<<<
[all …]
H A Dsqueeze.sam29 1:1011:F:255+17M15D20M 73 1 1011 0 5M2D = 1011 0 CCGAA 6>6+4 XT:A:R AM:i:0 NM:i:0 MD:Z:37 OQ:Z:1234…
31 18:462+29M5I3M:F:295 1121 1 75 0 5M 18 757 0 ACGTN ;>>>> XT:A:R AM:i:0 OQ:Z:12345dfs NM:i:2 MD:Z:30…
32 18:462+29M5I3M:F:295 97 1 75 0 * 18 757 0 * * OQ:Z:12345dfs AM:i:0
33 18:462+29M5I3M:F:295 97 2 75 0 5M 18 757 0 ACGTN * XT:A:R OQ:Z:12345dfs AM:i:0 NM:i:2 MD:Z:30A0C5
35 18:462+29M5I3M:F:296 97 1 1751 0 3S2H5M 18 757 0 TGCACGTN 453;>>>> OQ:Z:12345dfs
38 18:462+29M5I3M:F:295 97 1 75 0 5M 18 757 0 ACGTN ;>>>> XT:A:R AM:i:0 OQ:Z:12345dfs NM:i:2 MD:Z:30A0…
39 18:462+29M5I3M:F:298 97 3 75 0 3S5M4H 18 757 0 tgcacgtn 453;>>>> OQ:Z:12345dfs
41 1:1011:F:255+17M15D20M 1097 1 1011 0 5M2D = 1011 0 CCGAA 6>6+4 XT:A:R AM:i:0 NM:i:0 MD:Z:37 OQ:Z:12…
/dports/biology/bamutil/bamUtil-1.0.15/test/expected/
H A DtestRecabMaxQual49.sam1 1 0 1 10021 10 5M = 10 0 ACCCT QRRQQ OQ:Z:!<<<< RG:Z:rg1
2 2 0 1 10021 10 5M = 10 0 ACCCT QRRQQ OQ:Z:!<<<< RG:Z:rg1
3 3 0 1 10021 10 5M = 10 0 ACCCT QRRQQ OQ:Z:!<<<< RG:Z:rg1
4 4 0 1 10021 10 5M = 10 0 ACCCT QRRQQ OQ:Z:!<<<< RG:Z:rg1
5 5 0 1 10021 10 5M = 10 0 ACCCT QRRQQ OQ:Z:!<<<< RG:Z:rg1
6 6 0 1 10021 10 5M = 10 0 ACCCT QRRQQ OQ:Z:!<<<< RG:Z:rg1
7 7 0 1 10021 10 5M = 10 0 ACCCT QRRQQ OQ:Z:!<<<< RG:Z:rg1
8 8 0 1 10021 10 5M = 10 0 ACCCT QRRQQ OQ:Z:!<<<< RG:Z:rg1
9 9 0 1 10021 10 5M = 10 0 ACCCT QRRQQ OQ:Z:!<<<< RG:Z:rg1
10 10 0 1 10021 10 5M = 10 0 ACCCT QRRQQ OQ:Z:!<<<< RG:Z:rg1
[all …]
H A DtestRecabMaxQual50.sam1 1 0 1 10021 10 5M = 10 0 ACCCT QSSQQ OQ:Z:!<<<< RG:Z:rg1
2 2 0 1 10021 10 5M = 10 0 ACCCT QSSQQ OQ:Z:!<<<< RG:Z:rg1
3 3 0 1 10021 10 5M = 10 0 ACCCT QSSQQ OQ:Z:!<<<< RG:Z:rg1
4 4 0 1 10021 10 5M = 10 0 ACCCT QSSQQ OQ:Z:!<<<< RG:Z:rg1
5 5 0 1 10021 10 5M = 10 0 ACCCT QSSQQ OQ:Z:!<<<< RG:Z:rg1
6 6 0 1 10021 10 5M = 10 0 ACCCT QSSQQ OQ:Z:!<<<< RG:Z:rg1
7 7 0 1 10021 10 5M = 10 0 ACCCT QSSQQ OQ:Z:!<<<< RG:Z:rg1
8 8 0 1 10021 10 5M = 10 0 ACCCT QSSQQ OQ:Z:!<<<< RG:Z:rg1
9 9 0 1 10021 10 5M = 10 0 ACCCT QSSQQ OQ:Z:!<<<< RG:Z:rg1
10 10 0 1 10021 10 5M = 10 0 ACCCT QSSQQ OQ:Z:!<<<< RG:Z:rg1
[all …]
H A DtestRecabMaxQual51.sam1 1 0 1 10021 10 5M = 10 0 ACCCT QTTQQ OQ:Z:!<<<< RG:Z:rg1
2 2 0 1 10021 10 5M = 10 0 ACCCT QTTQQ OQ:Z:!<<<< RG:Z:rg1
3 3 0 1 10021 10 5M = 10 0 ACCCT QTTQQ OQ:Z:!<<<< RG:Z:rg1
4 4 0 1 10021 10 5M = 10 0 ACCCT QTTQQ OQ:Z:!<<<< RG:Z:rg1
5 5 0 1 10021 10 5M = 10 0 ACCCT QTTQQ OQ:Z:!<<<< RG:Z:rg1
6 6 0 1 10021 10 5M = 10 0 ACCCT QTTQQ OQ:Z:!<<<< RG:Z:rg1
7 7 0 1 10021 10 5M = 10 0 ACCCT QTTQQ OQ:Z:!<<<< RG:Z:rg1
8 8 0 1 10021 10 5M = 10 0 ACCCT QTTQQ OQ:Z:!<<<< RG:Z:rg1
9 9 0 1 10021 10 5M = 10 0 ACCCT QTTQQ OQ:Z:!<<<< RG:Z:rg1
10 10 0 1 10021 10 5M = 10 0 ACCCT QTTQQ OQ:Z:!<<<< RG:Z:rg1
[all …]
H A DtestRecabMinQual28.sam1 1 0 1 10021 10 5M = 10 0 ACCCT ;SSQQ OQ:Z:!<<<< RG:Z:rg1
2 2 0 1 10021 10 5M = 10 0 ACCCT ;SSQQ OQ:Z:!<<<< RG:Z:rg1
3 3 0 1 10021 10 5M = 10 0 ACCCT ;SSQQ OQ:Z:!<<<< RG:Z:rg1
4 4 0 1 10021 10 5M = 10 0 ACCCT ;SSQQ OQ:Z:!<<<< RG:Z:rg1
5 5 0 1 10021 10 5M = 10 0 ACCCT ;SSQQ OQ:Z:!<<<< RG:Z:rg1
6 6 0 1 10021 10 5M = 10 0 ACCCT ;SSQQ OQ:Z:!<<<< RG:Z:rg1
7 7 0 1 10021 10 5M = 10 0 ACCCT ;SSQQ OQ:Z:!<<<< RG:Z:rg1
8 8 0 1 10021 10 5M = 10 0 ACCCT ;SSQQ OQ:Z:!<<<< RG:Z:rg1
9 9 0 1 10021 10 5M = 10 0 ACCCT ;SSQQ OQ:Z:!<<<< RG:Z:rg1
10 10 0 1 10021 10 5M = 10 0 ACCCT ;SSQQ OQ:Z:!<<<< RG:Z:rg1
[all …]
H A DtestRecab.sam5 1 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:!<<<< RG:Z:rg1
6 2 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:!<<<< RG:Z:rg1
7 3 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:!<<<< RG:Z:rg1
8 4 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:!<<<< RG:Z:rg1
9 5 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:!<<<< RG:Z:rg1
10 6 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:!<<<< RG:Z:rg1
11 7 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:!<<<< RG:Z:rg1
12 8 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:!<<<< RG:Z:rg1
13 9 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:!<<<< RG:Z:rg1
14 10 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:!<<<< RG:Z:rg1
[all …]
H A DtestRecabBin21.sam5 1 0 1 10021 10 5M = 10 0 ACCCT /66// OQ:Z:!<<<< RG:Z:rg1
6 2 0 1 10021 10 5M = 10 0 ACCCT /66// OQ:Z:!<<<< RG:Z:rg1
7 3 0 1 10021 10 5M = 10 0 ACCCT /66// OQ:Z:!<<<< RG:Z:rg1
8 4 0 1 10021 10 5M = 10 0 ACCCT /66// OQ:Z:!<<<< RG:Z:rg1
9 5 0 1 10021 10 5M = 10 0 ACCCT /66// OQ:Z:!<<<< RG:Z:rg1
10 6 0 1 10021 10 5M = 10 0 ACCCT /66// OQ:Z:!<<<< RG:Z:rg1
11 7 0 1 10021 10 5M = 10 0 ACCCT /66// OQ:Z:!<<<< RG:Z:rg1
12 8 0 1 10021 10 5M = 10 0 ACCCT /66// OQ:Z:!<<<< RG:Z:rg1
13 9 0 1 10021 10 5M = 10 0 ACCCT /66// OQ:Z:!<<<< RG:Z:rg1
14 10 0 1 10021 10 5M = 10 0 ACCCT /66// OQ:Z:!<<<< RG:Z:rg1
[all …]
H A DtestRecabDBSNP.sam5 1 0 1 10021 10 5M = 10 0 ACCCT 5>$5> OQ:Z:!<<<< RG:Z:rg1
6 2 0 1 10021 10 5M = 10 0 ACCCT 5>$5> OQ:Z:!<<<< RG:Z:rg1
7 3 0 1 10021 10 5M = 10 0 ACCCT 5>$5> OQ:Z:!<<<< RG:Z:rg1
8 4 0 1 10021 10 5M = 10 0 ACCCT 5>$5> OQ:Z:!<<<< RG:Z:rg1
9 5 0 1 10021 10 5M = 10 0 ACCCT 5>$5> OQ:Z:!<<<< RG:Z:rg1
10 6 0 1 10021 10 5M = 10 0 ACCCT 5>$5> OQ:Z:!<<<< RG:Z:rg1
11 7 0 1 10021 10 5M = 10 0 ACCCT 5>$5> OQ:Z:!<<<< RG:Z:rg1
12 8 0 1 10021 10 5M = 10 0 ACCCT 5>$5> OQ:Z:!<<<< RG:Z:rg1
13 9 0 1 10021 10 5M = 10 0 ACCCT 5>$5> OQ:Z:!<<<< RG:Z:rg1
14 10 0 1 10021 10 5M = 10 0 ACCCT 5>$5> OQ:Z:!<<<< RG:Z:rg1
[all …]
H A DtestRecabDBSNPkeepPrev.sam5 1 0 1 10021 10 5M = 10 0 ACCCT 5$55! OQ:Z:!<<<< RG:Z:rg1
6 2 0 1 10021 10 5M = 10 0 ACCCT 5$55! OQ:Z:!<<<< RG:Z:rg1
7 3 0 1 10021 10 5M = 10 0 ACCCT 5$55! OQ:Z:!<<<< RG:Z:rg1
8 4 0 1 10021 10 5M = 10 0 ACCCT 5$55! OQ:Z:!<<<< RG:Z:rg1
9 5 0 1 10021 10 5M = 10 0 ACCCT 5$55! OQ:Z:!<<<< RG:Z:rg1
10 6 0 1 10021 10 5M = 10 0 ACCCT 5$55! OQ:Z:!<<<< RG:Z:rg1
11 7 0 1 10021 10 5M = 10 0 ACCCT 5$55! OQ:Z:!<<<< RG:Z:rg1
12 8 0 1 10021 10 5M = 10 0 ACCCT 5$55! OQ:Z:!<<<< RG:Z:rg1
13 9 0 1 10021 10 5M = 10 0 ACCCT 5$55! OQ:Z:!<<<< RG:Z:rg1
14 10 0 1 10021 10 5M = 10 0 ACCCT 5$55! OQ:Z:!<<<< RG:Z:rg1
[all …]
H A DtestRecabBin.sam5 1 0 1 10021 10 5M = 10 0 ACCCT /77// OQ:Z:!<<<< RG:Z:rg1
6 2 0 1 10021 10 5M = 10 0 ACCCT /77// OQ:Z:!<<<< RG:Z:rg1
7 3 0 1 10021 10 5M = 10 0 ACCCT /77// OQ:Z:!<<<< RG:Z:rg1
8 4 0 1 10021 10 5M = 10 0 ACCCT /77// OQ:Z:!<<<< RG:Z:rg1
9 5 0 1 10021 10 5M = 10 0 ACCCT /77// OQ:Z:!<<<< RG:Z:rg1
10 6 0 1 10021 10 5M = 10 0 ACCCT /77// OQ:Z:!<<<< RG:Z:rg1
11 7 0 1 10021 10 5M = 10 0 ACCCT /77// OQ:Z:!<<<< RG:Z:rg1
12 8 0 1 10021 10 5M = 10 0 ACCCT /77// OQ:Z:!<<<< RG:Z:rg1
13 9 0 1 10021 10 5M = 10 0 ACCCT /77// OQ:Z:!<<<< RG:Z:rg1
14 10 0 1 10021 10 5M = 10 0 ACCCT /77// OQ:Z:!<<<< RG:Z:rg1
[all …]
H A DtestRecabBin19.sam5 1 0 1 10021 10 5M = 10 0 ACCCT /44// OQ:Z:!<<<< RG:Z:rg1
6 2 0 1 10021 10 5M = 10 0 ACCCT /44// OQ:Z:!<<<< RG:Z:rg1
7 3 0 1 10021 10 5M = 10 0 ACCCT /44// OQ:Z:!<<<< RG:Z:rg1
8 4 0 1 10021 10 5M = 10 0 ACCCT /44// OQ:Z:!<<<< RG:Z:rg1
9 5 0 1 10021 10 5M = 10 0 ACCCT /44// OQ:Z:!<<<< RG:Z:rg1
10 6 0 1 10021 10 5M = 10 0 ACCCT /44// OQ:Z:!<<<< RG:Z:rg1
11 7 0 1 10021 10 5M = 10 0 ACCCT /44// OQ:Z:!<<<< RG:Z:rg1
12 8 0 1 10021 10 5M = 10 0 ACCCT /44// OQ:Z:!<<<< RG:Z:rg1
13 9 0 1 10021 10 5M = 10 0 ACCCT /44// OQ:Z:!<<<< RG:Z:rg1
14 10 0 1 10021 10 5M = 10 0 ACCCT /44// OQ:Z:!<<<< RG:Z:rg1
[all …]
H A DtestRecabStoreQ.sam5 1 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:;>>>> RG:Z:rg1
6 2 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:;>>>> RG:Z:rg1
7 3 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:;>>>> RG:Z:rg1
8 4 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:;>>>> RG:Z:rg1
9 5 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:;>>>> RG:Z:rg1
10 6 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:;>>>> RG:Z:rg1
11 7 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:;>>>> RG:Z:rg1
12 8 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:;>>>> RG:Z:rg1
13 9 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:;>>>> RG:Z:rg1
14 10 0 1 10021 10 5M = 10 0 ACCCT 25522 OQ:Z:;>>>> RG:Z:rg1
[all …]
H A DtestRecabUseBadOQ.sam5 1 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
6 2 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
7 3 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
8 4 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
9 5 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
10 6 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
11 7 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
12 8 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
13 9 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
14 10 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
[all …]
H A DtestRecabUseOQ.sam5 1 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
6 2 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
7 3 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
8 4 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
9 5 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
10 6 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
11 7 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
12 8 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
13 9 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
14 10 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
[all …]
H A DtestRecabUseStoreOQ.sam5 1 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
6 2 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
7 3 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
8 4 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
9 5 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
10 6 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
11 7 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
12 8 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
13 9 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
14 10 0 1 10021 10 5M = 10 0 ACCCT !5522 OQ:Z:!<<<< RG:Z:rg1
[all …]
H A DtestRecab2Keep.sam5 1 0 1 10021 10 5M = 10 0 ACCCT 2250. OQ:Z:!<<<< RG:Z:rg1
6 2 0 1 10021 10 5M = 10 0 ACCCT 2250. OQ:Z:!<<<< RG:Z:rg1
7 3 0 1 10021 10 5M = 10 0 ACCCT 2250. OQ:Z:!<<<< RG:Z:rg1
8 4 0 1 10021 10 5M = 10 0 ACCCT 2250. OQ:Z:!<<<< RG:Z:rg1
9 5 0 1 10021 10 5M = 10 0 ACCCT 2250. OQ:Z:!<<<< RG:Z:rg1
10 6 0 1 10021 10 5M = 10 0 ACCCT 2250. OQ:Z:!<<<< RG:Z:rg1
11 7 0 1 10021 10 5M = 10 0 ACCCT 2250. OQ:Z:!<<<< RG:Z:rg1
12 8 0 1 10021 10 5M = 10 0 ACCCT 2250. OQ:Z:!<<<< RG:Z:rg1
13 9 0 1 10021 10 5M = 10 0 ACCCT 2250. OQ:Z:!<<<< RG:Z:rg1
14 10 0 1 10021 10 5M = 10 0 ACCCT 2250. OQ:Z:!<<<< RG:Z:rg1
[all …]
H A DtestRecab2.sam5 1 0 1 10021 10 5M = 10 0 ACCCT 25500 OQ:Z:!<<<< RG:Z:rg1
6 2 0 1 10021 10 5M = 10 0 ACCCT 25500 OQ:Z:!<<<< RG:Z:rg1
7 3 0 1 10021 10 5M = 10 0 ACCCT 25500 OQ:Z:!<<<< RG:Z:rg1
8 4 0 1 10021 10 5M = 10 0 ACCCT 25500 OQ:Z:!<<<< RG:Z:rg1
9 5 0 1 10021 10 5M = 10 0 ACCCT 25500 OQ:Z:!<<<< RG:Z:rg1
10 6 0 1 10021 10 5M = 10 0 ACCCT 25500 OQ:Z:!<<<< RG:Z:rg1
11 7 0 1 10021 10 5M = 10 0 ACCCT 25500 OQ:Z:!<<<< RG:Z:rg1
12 8 0 1 10021 10 5M = 10 0 ACCCT 25500 OQ:Z:!<<<< RG:Z:rg1
13 9 0 1 10021 10 5M = 10 0 ACCCT 25500 OQ:Z:!<<<< RG:Z:rg1
14 10 0 1 10021 10 5M = 10 0 ACCCT 25500 OQ:Z:!<<<< RG:Z:rg1
[all …]
/dports/biology/gatk/gatk-4.2.0.0/src/test/resources/org/broadinstitute/hellbender/tools/walkers/varianteval/VariantEval/
H A DNA12878.hg19.HiSeq.WGS.cleaned.ug.snpfiltered.indelfiltered.optimized.cut.subset.vcf28 ##INFO=<ID=OQ,Number=1,Type=Float,Description="The original variant quality score">
65 …C=1;AF=0.50;AN=2;DP=51;Dels=0.00;HRun=0;HaplotypeScore=1.72;MQ=60.87;MQ0=0;OQ=817.22;QD=15.13;SB=-…
119 …C=1;AF=0.50;AN=2;DP=10;Dels=0.00;HRun=0;HaplotypeScore=0.16;MQ=60.00;MQ0=0;OQ=130.84;QD=11.89;SB=-…
126 …C=1;AF=0.50;AN=2;DP=84;Dels=0.00;HRun=0;HaplotypeScore=0.93;MQ=59.56;MQ0=0;OQ=1618.74;QD=19.04;SB=…
149 …C=1;AF=0.50;AN=2;DP=84;Dels=0.00;HRun=0;HaplotypeScore=0.79;MQ=60.00;MQ0=0;OQ=1103.68;QD=13.14;SB=…
156 …C=1;AF=0.50;AN=2;DP=77;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=59.76;MQ0=0;OQ=928.77;QD=12.06;SB=-…
168 …C=2;AF=1.00;AN=2;DP=77;Dels=0.00;HRun=0;HaplotypeScore=0.99;MQ=59.70;MQ0=0;OQ=2702.25;QD=35.09;SB=…
177 …C=1;AF=0.50;AN=2;DP=79;Dels=0.00;HRun=0;HaplotypeScore=0.79;MQ=60.00;MQ0=0;OQ=1175.95;QD=14.89;SB=…
225 …C=1;AF=0.50;AN=2;DP=13;Dels=0.00;HRun=1;HaplotypeScore=0.00;MQ=54.32;MQ0=0;OQ=159.94;QD=12.30;SB=-…
226 …AC=1;AF=0.50;AN=2;DP=5;Dels=0.00;HRun=0;HaplotypeScore=0.00;MQ=44.10;MQ0=0;OQ=64.00;QD=12.80;SB=-1…
[all …]
/dports/biology/gatk/gatk-4.2.0.0/src/test/resources/org/broadinstitute/hellbender/tools/LeftAlignIndels/
H A Dleft-aligned.sam16 …######################################### PG:Z:MarkDuplicates RG:Z:C09DF.1 OQ:Z:##################…
29 …######################################### PG:Z:MarkDuplicates RG:Z:C09DF.1 OQ:Z::;:+++22A+2+A2,<2+…
30 …######################################### PG:Z:MarkDuplicates RG:Z:C09DF.2 OQ:Z:-;;@##############…
33 …######################################### PG:Z:MarkDuplicates RG:Z:D0EN0.7 OQ:Z:##################…
34 …######################################### PG:Z:MarkDuplicates RG:Z:D0EN0.4 OQ:Z:##################…
36 …######################################### PG:Z:MarkDuplicates RG:Z:D0EN0.8 OQ:Z:##################…
37 …######################################### PG:Z:MarkDuplicates RG:Z:D0EN0.7 OQ:Z:+1:+?D:,A#########…
38 …######################################### PG:Z:MarkDuplicates RG:Z:C09DF.1 OQ:Z:++:++=+++=+C2++2+2…
48 …######################################### PG:Z:MarkDuplicates RG:Z:C09DF.2 OQ:Z:##################…
51 …######################################### PG:Z:MarkDuplicates RG:Z:C09DF.1 OQ:Z:##################…
[all …]
H A Dnon-aligned.sam16 …######################################### PG:Z:MarkDuplicates RG:Z:C09DF.1 OQ:Z:##################…
29 …######################################### PG:Z:MarkDuplicates RG:Z:C09DF.1 OQ:Z::;:+++22A+2+A2,<2+…
30 …######################################### PG:Z:MarkDuplicates RG:Z:C09DF.2 OQ:Z:-;;@##############…
33 …######################################### PG:Z:MarkDuplicates RG:Z:D0EN0.7 OQ:Z:##################…
34 …######################################### PG:Z:MarkDuplicates RG:Z:D0EN0.4 OQ:Z:##################…
36 …######################################### PG:Z:MarkDuplicates RG:Z:D0EN0.8 OQ:Z:##################…
37 …######################################### PG:Z:MarkDuplicates RG:Z:D0EN0.7 OQ:Z:+1:+?D:,A#########…
38 …######################################### PG:Z:MarkDuplicates RG:Z:C09DF.1 OQ:Z:++:++=+++=+C2++2+2…
48 …######################################### PG:Z:MarkDuplicates RG:Z:C09DF.2 OQ:Z:##################…
51 …######################################### PG:Z:MarkDuplicates RG:Z:C09DF.1 OQ:Z:##################…
[all …]
/dports/biology/gatk/gatk-4.2.0.0/src/test/resources/org/broadinstitute/hellbender/engine/
H A DCEUTrio.HiSeq.WGS.b37.NA12878.20.21.10000000-10000020.with.unmapped.queryname.samtools.sam24 …##################################################### XC:i:35 RG:Z:20FUK.1 OQ:Z:##################…
25 …##################################################### XC:i:35 RG:Z:20FUK.1 OQ:Z:##################…
26 …##################################################### XC:i:35 RG:Z:20FUK.1 OQ:Z:##################…
27 …##################################################### XC:i:35 RG:Z:20FUK.1 OQ:Z:##################…
28 …GGG;GE?FHGGGFGGGGHAGGGCGAGHHGGGED@GCGDGGEGBGFGGEF@AHEFHFFFGFC RG:Z:20FUK.1 OQ:Z:HHHHHHHHHHHHHHHHHG…
29 …GHGGGGGFFGGHHGGFHGFHGGFHGGGGGGGGBECCHHGHGGGEGDGHGGGGEGEHGAFG; RG:Z:20FUK.1 OQ:Z:HHHHHHHHHHHHHHHHHH…
30 …##################################################### XC:i:35 RG:Z:20FUK.1 OQ:Z:##################…
31 …##################################################### XC:i:35 RG:Z:20FUK.1 OQ:Z:##################…
32 …##################################################### XC:i:35 RG:Z:20FUK.1 OQ:Z:##################…
33 …##################################################### XC:i:35 RG:Z:20FUK.1 OQ:Z:##################…
[all …]

12345678910>>...47