/dports/biology/libnuml/NuML-1.1.4/libnuml/src/numl/ |
H A D | OntologyTerm.cpp | 39 OntologyTerm::OntologyTerm (unsigned int level, unsigned int version) : in OntologyTerm() function in OntologyTerm 51 OntologyTerm::OntologyTerm (NUMLNamespaces *numlns) : in OntologyTerm() function in OntologyTerm 79 OntologyTerm* 171 OntologyTerm::OntologyTerm() : in OntologyTerm() function in OntologyTerm 180 OntologyTerm::~OntologyTerm () in ~OntologyTerm() 319 OntologyTerm * 327 const OntologyTerm * 348 OntologyTerm* 357 const OntologyTerm* 368 OntologyTerm* [all …]
|
H A D | OntologyTerm.h | 44 class LIBNUML_EXTERN OntologyTerm : public NMBase { 64 OntologyTerm (unsigned int level, unsigned int version); 95 OntologyTerm (NUMLNamespaces* numlns); 112 virtual OntologyTerm* clone () const; 144 virtual ~OntologyTerm(); 273 OntologyTerm(); 376 virtual OntologyTerm * get(unsigned int n); 388 virtual const OntologyTerm * get(unsigned int n) const; 405 virtual OntologyTerm* get (const std::string& sid); 435 virtual OntologyTerm* remove (unsigned int n); [all …]
|
H A D | NUMLVisitor.h | 43 class OntologyTerm; variable 82 virtual bool visit (const OntologyTerm &x); 97 virtual void leave (const OntologyTerm &x);
|
H A D | NUMLVisitor.cpp | 47 NUMLVisitor::visit (const OntologyTerm& x) in visit() 111 NUMLVisitor::leave (const OntologyTerm& x) in leave()
|
H A D | NUMLDocument.h | 51 class OntologyTerm; variable 306 OntologyTerm* createOntologyTerm ();
|
H A D | NUMLDocument.cpp | 445 OntologyTerm* 448 OntologyTerm* oTerm = 0; in createOntologyTerm() 452 oTerm = new OntologyTerm(getNUMLNamespaces()); in createOntologyTerm()
|
/dports/biology/py-libnuml/NuML-1.1.4/libnuml/src/numl/ |
H A D | OntologyTerm.cpp | 39 OntologyTerm::OntologyTerm (unsigned int level, unsigned int version) : in OntologyTerm() function in OntologyTerm 51 OntologyTerm::OntologyTerm (NUMLNamespaces *numlns) : in OntologyTerm() function in OntologyTerm 79 OntologyTerm* 171 OntologyTerm::OntologyTerm() : in OntologyTerm() function in OntologyTerm 180 OntologyTerm::~OntologyTerm () in ~OntologyTerm() 319 OntologyTerm * 327 const OntologyTerm * 348 OntologyTerm* 357 const OntologyTerm* 368 OntologyTerm* [all …]
|
H A D | OntologyTerm.h | 44 class LIBNUML_EXTERN OntologyTerm : public NMBase { 64 OntologyTerm (unsigned int level, unsigned int version); 95 OntologyTerm (NUMLNamespaces* numlns); 112 virtual OntologyTerm* clone () const; 144 virtual ~OntologyTerm(); 273 OntologyTerm(); 376 virtual OntologyTerm * get(unsigned int n); 388 virtual const OntologyTerm * get(unsigned int n) const; 405 virtual OntologyTerm* get (const std::string& sid); 435 virtual OntologyTerm* remove (unsigned int n); [all …]
|
H A D | NUMLVisitor.h | 43 class OntologyTerm; variable 82 virtual bool visit (const OntologyTerm &x); 97 virtual void leave (const OntologyTerm &x);
|
H A D | NUMLVisitor.cpp | 47 NUMLVisitor::visit (const OntologyTerm& x) in visit() 111 NUMLVisitor::leave (const OntologyTerm& x) in leave()
|
H A D | NUMLDocument.h | 51 class OntologyTerm; variable 306 OntologyTerm* createOntologyTerm ();
|
H A D | NUMLDocument.cpp | 445 OntologyTerm* 448 OntologyTerm* oTerm = 0; in createOntologyTerm() 452 oTerm = new OntologyTerm(getNUMLNamespaces()); in createOntologyTerm()
|
/dports/biology/p5-Bio-FeatureIO/Bio-FeatureIO-1.6.905/lib/Bio/FeatureIO/ |
H A D | interpro.pm | 73 use Bio::Annotation::OntologyTerm; 142 …my $t = Bio::Annotation::OntologyTerm->new(-identifier => 'SO:0000417', -name => 'polypeptide_doma… 158 my $o = Bio::Annotation::OntologyTerm->new(-identifier => $cNode->getAttribute('id'));
|
H A D | gff.pm | 88 use Bio::Annotation::OntologyTerm; 488 my $fta = Bio::Annotation::OntologyTerm->new(); 562 my $fta = Bio::Annotation::OntologyTerm->new(); 672 my $a = Bio::Annotation::OntologyTerm->new();
|
/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/Annotation/ |
H A D | Annotation.t | 160 test_skip(-tests => 7, -requires_modules => [qw(Bio::Annotation::OntologyTerm)]); 161 use_ok('Bio::Annotation::OntologyTerm'); 162 # OntologyTerm annotation 163 my $termann = Bio::Annotation::OntologyTerm->new(-label => 'test case', 184 $factory->type('Bio::Annotation::OntologyTerm'); 189 isa_ok($ann, 'Bio::Annotation::OntologyTerm'); 217 # factory guessing the type: OntologyTerm 221 like(ref $ann, qr(Bio::Annotation::OntologyTerm));
|
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Annotation/ |
H A D | OntologyTerm.pm | 106 package Bio::Annotation::OntologyTerm; 107 $Bio::Annotation::OntologyTerm::VERSION = '1.7.7';
|
/dports/biology/libnuml/NuML-1.1.4/libnuml/src/bindings/java/ |
H A D | local.i | 90 COVARIANT_RTYPE_CLONE(OntologyTerm) 110 %typemap(jstype) OntologyTerm* OntologyTerms::get "OntologyTerm" 111 %typemap(jstype) OntologyTerm* OntologyTerms::remove "OntologyTerm" 289 return new OntologyTerm(cPtr, owner); in DowncastNMBase()
|
/dports/biology/py-libnuml/NuML-1.1.4/libnuml/src/bindings/java/ |
H A D | local.i | 90 COVARIANT_RTYPE_CLONE(OntologyTerm) 110 %typemap(jstype) OntologyTerm* OntologyTerms::get "OntologyTerm" 111 %typemap(jstype) OntologyTerm* OntologyTerms::remove "OntologyTerm" 289 return new OntologyTerm(cPtr, owner); in DowncastNMBase()
|
/dports/biology/libnuml/NuML-1.1.4/libnuml/examples/java/ |
H A D | createNUML.java | 33 import org.numl.libnuml.OntologyTerm; 109 OntologyTerm oTerm = numlDoc.createOntologyTerm(); in createExampleTwoDimensionNuMLDoc()
|
H A D | printNUML.java | 106 OntologyTerm oTerm = oTerms.get(i); in main()
|
/dports/biology/py-libnuml/NuML-1.1.4/libnuml/examples/java/ |
H A D | createNUML.java | 33 import org.numl.libnuml.OntologyTerm; 109 OntologyTerm oTerm = numlDoc.createOntologyTerm(); in createExampleTwoDimensionNuMLDoc()
|
/dports/biology/libnuml/NuML-1.1.4/libnuml/src/numl/common/ |
H A D | numlfwd.h | 100 typedef CLASS_OR_STRUCT OntologyTerm OntologyTerm_t;
|
/dports/biology/py-libnuml/NuML-1.1.4/libnuml/src/numl/common/ |
H A D | numlfwd.h | 100 typedef CLASS_OR_STRUCT OntologyTerm OntologyTerm_t;
|
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/SeqIO/ |
H A D | locuslink.pm | 110 use Bio::Annotation::OntologyTerm; 514 my $goann = Bio::Annotation::OntologyTerm->new(
|
/dports/biology/p5-Bio-FeatureIO/Bio-FeatureIO-1.6.905/lib/Bio/SeqFeature/ |
H A D | Annotated.pm | 95 use Bio::Annotation::OntologyTerm; 365 return map { Bio::Annotation::OntologyTerm->new(-identifier => $_->value) } @values 680 my $newterm = Bio::Annotation::OntologyTerm->new;
|