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Searched refs:OntologyTerm (Results 1 – 25 of 57) sorted by relevance

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/dports/biology/libnuml/NuML-1.1.4/libnuml/src/numl/
H A DOntologyTerm.cpp39 OntologyTerm::OntologyTerm (unsigned int level, unsigned int version) : in OntologyTerm() function in OntologyTerm
51 OntologyTerm::OntologyTerm (NUMLNamespaces *numlns) : in OntologyTerm() function in OntologyTerm
79 OntologyTerm*
171 OntologyTerm::OntologyTerm() : in OntologyTerm() function in OntologyTerm
180 OntologyTerm::~OntologyTerm () in ~OntologyTerm()
319 OntologyTerm *
327 const OntologyTerm *
348 OntologyTerm*
357 const OntologyTerm*
368 OntologyTerm*
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H A DOntologyTerm.h44 class LIBNUML_EXTERN OntologyTerm : public NMBase {
64 OntologyTerm (unsigned int level, unsigned int version);
95 OntologyTerm (NUMLNamespaces* numlns);
112 virtual OntologyTerm* clone () const;
144 virtual ~OntologyTerm();
273 OntologyTerm();
376 virtual OntologyTerm * get(unsigned int n);
388 virtual const OntologyTerm * get(unsigned int n) const;
405 virtual OntologyTerm* get (const std::string& sid);
435 virtual OntologyTerm* remove (unsigned int n);
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H A DNUMLVisitor.h43 class OntologyTerm; variable
82 virtual bool visit (const OntologyTerm &x);
97 virtual void leave (const OntologyTerm &x);
H A DNUMLVisitor.cpp47 NUMLVisitor::visit (const OntologyTerm& x) in visit()
111 NUMLVisitor::leave (const OntologyTerm& x) in leave()
H A DNUMLDocument.h51 class OntologyTerm; variable
306 OntologyTerm* createOntologyTerm ();
H A DNUMLDocument.cpp445 OntologyTerm*
448 OntologyTerm* oTerm = 0; in createOntologyTerm()
452 oTerm = new OntologyTerm(getNUMLNamespaces()); in createOntologyTerm()
/dports/biology/py-libnuml/NuML-1.1.4/libnuml/src/numl/
H A DOntologyTerm.cpp39 OntologyTerm::OntologyTerm (unsigned int level, unsigned int version) : in OntologyTerm() function in OntologyTerm
51 OntologyTerm::OntologyTerm (NUMLNamespaces *numlns) : in OntologyTerm() function in OntologyTerm
79 OntologyTerm*
171 OntologyTerm::OntologyTerm() : in OntologyTerm() function in OntologyTerm
180 OntologyTerm::~OntologyTerm () in ~OntologyTerm()
319 OntologyTerm *
327 const OntologyTerm *
348 OntologyTerm*
357 const OntologyTerm*
368 OntologyTerm*
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H A DOntologyTerm.h44 class LIBNUML_EXTERN OntologyTerm : public NMBase {
64 OntologyTerm (unsigned int level, unsigned int version);
95 OntologyTerm (NUMLNamespaces* numlns);
112 virtual OntologyTerm* clone () const;
144 virtual ~OntologyTerm();
273 OntologyTerm();
376 virtual OntologyTerm * get(unsigned int n);
388 virtual const OntologyTerm * get(unsigned int n) const;
405 virtual OntologyTerm* get (const std::string& sid);
435 virtual OntologyTerm* remove (unsigned int n);
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H A DNUMLVisitor.h43 class OntologyTerm; variable
82 virtual bool visit (const OntologyTerm &x);
97 virtual void leave (const OntologyTerm &x);
H A DNUMLVisitor.cpp47 NUMLVisitor::visit (const OntologyTerm& x) in visit()
111 NUMLVisitor::leave (const OntologyTerm& x) in leave()
H A DNUMLDocument.h51 class OntologyTerm; variable
306 OntologyTerm* createOntologyTerm ();
H A DNUMLDocument.cpp445 OntologyTerm*
448 OntologyTerm* oTerm = 0; in createOntologyTerm()
452 oTerm = new OntologyTerm(getNUMLNamespaces()); in createOntologyTerm()
/dports/biology/p5-Bio-FeatureIO/Bio-FeatureIO-1.6.905/lib/Bio/FeatureIO/
H A Dinterpro.pm73 use Bio::Annotation::OntologyTerm;
142 …my $t = Bio::Annotation::OntologyTerm->new(-identifier => 'SO:0000417', -name => 'polypeptide_doma…
158 my $o = Bio::Annotation::OntologyTerm->new(-identifier => $cNode->getAttribute('id'));
H A Dgff.pm88 use Bio::Annotation::OntologyTerm;
488 my $fta = Bio::Annotation::OntologyTerm->new();
562 my $fta = Bio::Annotation::OntologyTerm->new();
672 my $a = Bio::Annotation::OntologyTerm->new();
/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/Annotation/
H A DAnnotation.t160 test_skip(-tests => 7, -requires_modules => [qw(Bio::Annotation::OntologyTerm)]);
161 use_ok('Bio::Annotation::OntologyTerm');
162 # OntologyTerm annotation
163 my $termann = Bio::Annotation::OntologyTerm->new(-label => 'test case',
184 $factory->type('Bio::Annotation::OntologyTerm');
189 isa_ok($ann, 'Bio::Annotation::OntologyTerm');
217 # factory guessing the type: OntologyTerm
221 like(ref $ann, qr(Bio::Annotation::OntologyTerm));
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Annotation/
H A DOntologyTerm.pm106 package Bio::Annotation::OntologyTerm;
107 $Bio::Annotation::OntologyTerm::VERSION = '1.7.7';
/dports/biology/libnuml/NuML-1.1.4/libnuml/src/bindings/java/
H A Dlocal.i90 COVARIANT_RTYPE_CLONE(OntologyTerm)
110 %typemap(jstype) OntologyTerm* OntologyTerms::get "OntologyTerm"
111 %typemap(jstype) OntologyTerm* OntologyTerms::remove "OntologyTerm"
289 return new OntologyTerm(cPtr, owner); in DowncastNMBase()
/dports/biology/py-libnuml/NuML-1.1.4/libnuml/src/bindings/java/
H A Dlocal.i90 COVARIANT_RTYPE_CLONE(OntologyTerm)
110 %typemap(jstype) OntologyTerm* OntologyTerms::get "OntologyTerm"
111 %typemap(jstype) OntologyTerm* OntologyTerms::remove "OntologyTerm"
289 return new OntologyTerm(cPtr, owner); in DowncastNMBase()
/dports/biology/libnuml/NuML-1.1.4/libnuml/examples/java/
H A DcreateNUML.java33 import org.numl.libnuml.OntologyTerm;
109 OntologyTerm oTerm = numlDoc.createOntologyTerm(); in createExampleTwoDimensionNuMLDoc()
H A DprintNUML.java106 OntologyTerm oTerm = oTerms.get(i); in main()
/dports/biology/py-libnuml/NuML-1.1.4/libnuml/examples/java/
H A DcreateNUML.java33 import org.numl.libnuml.OntologyTerm;
109 OntologyTerm oTerm = numlDoc.createOntologyTerm(); in createExampleTwoDimensionNuMLDoc()
/dports/biology/libnuml/NuML-1.1.4/libnuml/src/numl/common/
H A Dnumlfwd.h100 typedef CLASS_OR_STRUCT OntologyTerm OntologyTerm_t;
/dports/biology/py-libnuml/NuML-1.1.4/libnuml/src/numl/common/
H A Dnumlfwd.h100 typedef CLASS_OR_STRUCT OntologyTerm OntologyTerm_t;
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/SeqIO/
H A Dlocuslink.pm110 use Bio::Annotation::OntologyTerm;
514 my $goann = Bio::Annotation::OntologyTerm->new(
/dports/biology/p5-Bio-FeatureIO/Bio-FeatureIO-1.6.905/lib/Bio/SeqFeature/
H A DAnnotated.pm95 use Bio::Annotation::OntologyTerm;
365 return map { Bio::Annotation::OntologyTerm->new(-identifier => $_->value) } @values
680 my $newterm = Bio::Annotation::OntologyTerm->new;

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