Searched refs:PASS (Results 1 – 25 of 7633) sorted by relevance
12345678910>>...306
2 2.05 1 rs6672356 -2.3245 PASS4 12.15 0 . -1.5473 PASS20 2.49 0 . -2.2402 PASS21 0.0 1 . -82.9952 PASS32 0.0 0 . -6.7137 PASS39 0.0 0 . -16.5654 PASS43 0.27 0 . -3.2009 PASS56 0.0 0 . -8.4442 PASS82 0.0 1 . -8.3820 PASS86 0.05 1 . -3.9542 PASS[all …]
22 1 10020400 . C T 30.66 PASS AF=0.03;AFrange=0.01-0.09,95%;AlleleBalance=0.72;DoC=193;FisherStrand=9…23 …PASS AF=0.05;AFrange=0.01-0.11,95%;AlleleBalance=0.73;DoC=179;FisherStrand=17.9;HomopolymerRun=0;M…24 …PASS AF=0.04,0.00;AFrange=0.01-0.10,95%;AlleleBalance=0.73;DoC=166;FisherStrand=15.2;HomopolymerRu…25 1 10020436 . A T 64.57 PASS AF=0.06;AFrange=0.01-0.12,95%;AlleleBalance=0.73;DoC=168;FisherStrand=3…26 …PASS AF=0.06,0.00;AFrange=0.01-0.13,95%;AlleleBalance=0.73;DoC=156;FisherStrand=9.4;HomopolymerRun…27 …PASS AF=0.06;AFrange=0.01-0.14,95%;AlleleBalance=0.72;DoC=140;FisherStrand=9.4;HomopolymerRun=0;MA…28 1 10020452 . T C 32.71 PASS AF=0.05;AFrange=0.01-0.12,95%;AlleleBalance=0.70;DoC=138;FisherStrand=9…29 …PASS AF=0.05,0.00;AFrange=0.01-0.12,95%;AlleleBalance=0.70;DoC=133;FisherStrand=10.8;HomopolymerRu…30 1 10020464 . G T 74.83 PASS AF=0.06;AFrange=0.01-0.13,95%;AlleleBalance=0.74;DoC=152;FisherStrand=2…31 …PASS AF=0.06,0.00;AFrange=0.01-0.13,95%;AlleleBalance=0.70;DoC=182;FisherStrand=13.9;HomopolymerRu…[all …]
131 PASS = true, enumerator141 {"ABS", PASS},161 {"AVG", PASS},164 {"BIN", PASS},198 {"COS", PASS},199 {"COT", PASS},221 {"DAY", PASS},234 {"ELT", PASS},271 {"IF", PASS},352 {"LN", PASS},[all …]
3 1 871490 . G A 72.0 PASS 1 87 -547.28 Intersection 1.00000 silent9 1 890423 . A C 62.0 PASS 0 NA NA soap 0.500000 missense10 1 898188 . A C 22.0 PASS 0 NA NA soap 0.0113507 missense29 1 1876952 . G C 28.0 PASS 0 NA NA soap 1.00000 silent52 1 3400840 . T G 58.0 PASS 0 NA NA soap 0.357143 missense53 1 3400842 . C G 23.0 PASS 0 NA NA soap 0.345238 missense84 1 6453232 . T C 26.0 PASS 1 NA NA soap 0.639155 missense99 1 7812642 . T A 41.0 PASS 0 NA NA soap 0.477476 silent145 1 11779042 . A C 34.0 PASS 0 NA NA soap 0.500023 silent280 1 17192709 . A C 23.0 PASS 0 NA NA soap 0.510212 NA[all …]
2 1 867694 . T C 11.0 PASS 1 5 -49.69 filterInsoap-gatk 1.00000 missense3 1 871490 . G A 72.0 PASS 1 87 -547.28 Intersection 1.00000 silent9 1 890423 . A C 62.0 PASS 0 NA NA soap 0.500000 missense10 1 898188 . A C 22.0 PASS 0 NA NA soap 0.0113507 missense29 1 1876952 . G C 28.0 PASS 0 NA NA soap 1.00000 silent52 1 3400840 . T G 58.0 PASS 0 NA NA soap 0.357143 missense53 1 3400842 . C G 23.0 PASS 0 NA NA soap 0.345238 missense84 1 6453232 . T C 26.0 PASS 1 NA NA soap 0.639155 missense96 1 7812611 . T G 27.0 PASS 0 NA NA soap 0.0457059 missense98 1 7812640 . G A 26.0 PASS 1 NA NA soap 0.426684 missense[all …]
12 21 25 sim_snp_0 A T . PASS . . 113 21 364 sim_snp_1 G A . PASS . . 114 21 644 sim_snp_2 C T . PASS . . 115 21 993 sim_snp_3 C A . PASS . . 116 21 1152 sim_snp_4 T A . PASS . . 117 21 1379 sim_snp_5 T A . PASS . . 119 21 1918 sim_snp_6 T C . PASS . . 121 21 2129 sim_snp_7 G T . PASS . . 122 21 2474 sim_snp_8 A G . PASS . . 123 21 3068 sim_snp_9 T A . PASS . . 1[all …]
12 21 272 sim_snp_0 A G . PASS . . 114 21 1032 sim_snp_1 T G . PASS . . 115 21 1511 sim_snp_2 A G . PASS . . 116 21 1540 sim_snp_3 A G . PASS . . 117 21 1637 sim_snp_4 C T . PASS . . 118 21 1752 sim_snp_5 T G . PASS . . 119 21 2183 sim_snp_6 T A . PASS . . 120 21 2390 sim_snp_7 T C . PASS . . 121 21 2419 sim_snp_8 T G . PASS . . 122 21 2788 sim_snp_9 A G . PASS . . 1[all …]
206 chr1 861349 exm41 C T . PASS .209 chr1 865584 exm44 G A . PASS .210 chr1 865625 exm46 G A . PASS .211 chr1 865628 exm47 G A . PASS .212 chr1 865662 exm51 G A . PASS .213 chr1 865665 exm53 G A . PASS .214 chr1 865694 exm55 C T . PASS .215 chr1 865700 exm56 C T . PASS .216 chr1 866429 exm60 C T . PASS .217 chr1 866438 exm63 G A . PASS .[all …]
96 1 861349 exm41 C T . PASS .99 1 865584 exm44 G A . PASS .100 1 865625 exm46 G A . PASS .101 1 865628 exm47 G A . PASS .102 1 865662 exm51 G A . PASS .103 1 865665 exm53 G A . PASS .104 1 865694 exm55 C T . PASS .105 1 865700 exm56 C T . PASS .106 1 866429 exm60 C T . PASS .107 1 871276 exm85 G A . PASS .[all …]
93 1 10492 . C T 13.30 PASS .94 1 10719 . G C 14.26 PASS .95 1 12719 . G C 38.95 PASS .96 1 12807 . C T 37.53 PASS .98 1 13079 . C G 47.49 PASS .103 1 13613 . T A 20.73 PASS .104 1 13684 . C T 26.94 PASS .107 1 13868 . A G 17.86 PASS .108 1 13912 . G A 42.60 PASS .109 1 14542 . A G 13.46 PASS .[all …]
1 frin inf inf 0 PASS2 frin 1.9 2 0 PASS3 frin 1.1 1 0 PASS4 frin 0 0 0 PASS5 frin -0 -0 0 PASS6 frin -1.1 -1 0 PASS7 frin -1.9 -2 0 PASS10 frin 0.9 1 0 PASS11 frin 0.1 0 0 PASS19 friz 0 0 0 PASS[all …]
28 20 461243 . AT A 100 PASS SOMATIC GT 0/139 20 1488617 . GCC G 100 PASS SOMATIC GT 0/142 20 1730106 . AT A 100 PASS SOMATIC GT 0/170 20 4252640 . T TTA 100 PASS SOMATIC GT 0/184 20 5737052 . G GCA 100 PASS SOMATIC GT 0/188 20 6047892 . C CCT 100 PASS SOMATIC GT 0/197 20 6833665 . TCA T 100 PASS SOMATIC GT 0/199 20 7028619 . T TTA 100 PASS SOMATIC GT 0/1116 20 8900228 . A AAC 100 PASS SOMATIC GT 0/1119 20 8969462 . T TGG 100 PASS SOMATIC GT 0/1[all …]
29 20 2038732 . ACTAG A 100 PASS SOMATIC GT 0/143 20 4362055 . CCAGG C 100 PASS SOMATIC GT 0/149 20 5073622 . ATAG A 100 PASS SOMATIC GT 0/173 20 8864816 . CA C 100 PASS SOMATIC GT 0/196 20 13761339 . AC A 100 PASS SOMATIC GT 0/1118 20 16718778 . TA T 100 PASS SOMATIC GT 0/1120 20 17326367 . GA G 100 PASS SOMATIC GT 0/1150 20 23284525 . CT C 100 PASS SOMATIC GT 0/1156 20 24863704 . T TC 100 PASS SOMATIC GT 0/1161 20 25620672 . GT G 100 PASS SOMATIC GT 0/1[all …]
14 1 204 sim_small_indel_0 G GAGTA . PASS . . 1|025 1 1157 sim_snp_0 C G,T . PASS . . 1|227 1 1417 sim_snp_1 A C . PASS . . 1|129 1 1535 sim_snp_2 C A,T . PASS . . 2|140 1 2308 sim_snp_3 C G . PASS . . 1|155 1 3272 sim_snp_4 G A,C . PASS . . 1|280 1 5968 sim_snp_5 A G,T . PASS . . 1|299 1 8031 sim_snp_6 T A,G . PASS . . 2|1101 1 8527 sim_snp_7 T C,G . PASS . . 2|1106 1 9470 sim_snp_8 T A . PASS . . 1|0[all …]
119 scaffold612 3644 . C T . PASS AR2=1;DR2=1;AF=0.053 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|1:1:0,1,0 0|0…120 scaffold612 3658 . G A . PASS AR2=1;DR2=1;AF=0.266 GT:DS:GP 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0…121 scaffold612 3659 . A C . PASS AR2=1;DR2=1;AF=0.17 GT:DS:GP 1|0:1:0,1,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0:…122 scaffold612 3684 . C T . PASS AR2=1;DR2=1;AF=0.032 GT:DS:GP 0|0:0:1,0,0 1|0:1:0,1,0 0|0:0:1,0,0 0|0…123 scaffold612 3694 . T G . PASS AR2=1;DR2=1;AF=0.181 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0…125 scaffold612 3700 . T A . PASS AR2=1;DR2=1;AF=0.096 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0…126 scaffold612 3703 . C T . PASS AR2=1;DR2=1;AF=0.096 GT:DS:GP 1|0:1:0,1,0 0|0:0:1,0,0 1|1:2:0,0,1 0|0…127 scaffold612 3708 . G A . PASS AR2=1;DR2=1;AF=0.043 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 1|0…149 scaffold612 4047 . G T . PASS AR2=1;DR2=1;AF=0.16 GT:DS:GP 0|0:0:1,0,0 0|0:0:1,0,0 0|0:0:1,0,0 0|0:…153 scaffold612 4088 . G T . PASS AR2=1;DR2=1;AF=0.33 GT:DS:GP 0|1:1:0,1,0 0|1:1:0,1,0 0|0:0:1,0,0 0|0:…[all …]
159 22 17589948 . G C 410 PASS AC=2;AF=0.00122;AN=1636;set=Intersection484 22 18354804 . G A 129 PASS AC=2;AF=0.00128;AN=1562;set=Intersection669 22 18923629 . C T 134.78 PASS AC=8;AF=0.0245;AN=326;set=Intersection1119 22 19711493 . G T 60.80 PASS AC=1;AF=0.0016;AN=612;set=Intersection1681 22 20779892 . C T 91.19 PASS AC=1;AF=0.0013;AN=780;set=Intersection2378 22 21996599 . C T 69.28 PASS AC=5;AF=0.0064;AN=786;set=Intersection3752 22 24988805 . A C 65.12 PASS AC=5;AF=0.0086;AN=582;set=Intersection4273 22 26879967 . A G 36.58 PASS AC=3;AF=0.031;AN=98;set=Intersection4511 22 29169063 . G A 38.66 PASS AC=4;AF=0.50;AN=8;set=Intersection4594 22 29469130 . A C 62.27 PASS AC=11;AF=0.611;AN=18;set=Intersection[all …]
111 21 15804413 . A ACAC 100 PASS SOMATIC GT 0/1114 21 16306327 . T TA 100 PASS SOMATIC GT 0/1120 21 18085224 . AG A 100 PASS SOMATIC GT 0/1125 21 18401477 . A AGGC 100 PASS SOMATIC GT 0/1156 21 23256657 . C CGT 100 PASS SOMATIC GT 0/1160 21 23774801 . TA T 100 PASS SOMATIC GT 0/1161 21 23875969 . TAC T 100 PASS SOMATIC GT 0/1180 21 27651631 . T TCC 100 PASS SOMATIC GT 0/1228 21 33921554 . C CT 100 PASS SOMATIC GT 0/1242 21 36367168 . TG T 100 PASS SOMATIC GT 0/1[all …]
2 ##FILTER=<ID=PASS,Description="All filters passed">81 22 51 . C . 0 PASS BLOCKAVG_min30p3a GT:GQX:DP:DPF 0/0:30:11:082 22 52 . C . 0 PASS BLOCKAVG_min30p3a GT:GQX:DP:DPF 0/0:30:11:083 22 53 . T . 0 PASS BLOCKAVG_min30p3a GT:GQX:DP:DPF 0/0:30:11:084 22 54 . A . 0 PASS BLOCKAVG_min30p3a GT:GQX:DP:DPF 0/0:30:11:085 22 55 . A . 0 PASS BLOCKAVG_min30p3a GT:GQX:DP:DPF 0/0:30:11:086 22 56 . G . 0 PASS BLOCKAVG_min30p3a GT:GQX:DP:DPF 0/0:42:15:087 22 57 . T . 0 PASS BLOCKAVG_min30p3a GT:GQX:DP:DPF 0/0:42:15:088 22 58 . G . 0 PASS BLOCKAVG_min30p3a GT:GQX:DP:DPF 0/0:42:15:0235 22 205 . T . 0 PASS . GT:GQX:DP:DPF 0/0:72:36:0[all …]