Searched refs:PC_Length (Results 1 – 3 of 3) sorted by relevance
33 if ( (PC[iP][PC_rStart]==rStart) && PC[iP][PC_Length]<L ) continue; in storeAligns()34 …if ( (PC[iP][PC_rStart]==rStart) && PC[iP][PC_Length]==L ) return; //same alignment as before, do … in storeAligns()65 … if ( (PC[iP1][PC_rStart]==rStart) && PC[iP1][PC_Length]==L ) return; //exactly the same piece in storeAligns()67 … if ( rStart+L <= PC[iP1][PC_rStart]+PC[iP1][PC_Length] ) {//new seed is within the old piece in storeAligns()80 … if ( rStart+L >= PC[iP1][PC_rStart]+PC[iP1][PC_Length] ) {//old piece is within the new piece in storeAligns()89 …-1 && ( rStart < PC[iP1][PC_rStart] || (rStart == PC[iP1][PC_rStart] && L>PC[iP1][PC_Length]) ) ) { in storeAligns()139 PC[iP][PC_Length]=L; //alignment length in storeAligns()
179 #define PC_Length 1 macro
49 uint aLength= PC[iP][PC_Length]; in stitchPieces()132 uint aLength=PC[iP][PC_Length]; in stitchPieces()