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/dports/biology/fasttree/FastTree-2.1.10_5/
H A DFastTree-2.1.10.c4853 double *PSame1 = PSameVector(len1, rates); in PosteriorProfile() local
4854 double *PDiff1 = PDiffVector(PSame1, rates); in PosteriorProfile()
4885 out->weights[i] = w1 * (PSame1[iRate] - PDiff1[iRate]); in PosteriorProfile()
4889 double f12code = (w1*PSame1[iRate] + (1-w1)*0.25) * (w2*PSame2[iRate] + (1-w2)*0.25); in PosteriorProfile()
4903 PSame1[iRate], PSame2[iRate], in PosteriorProfile()
4932 f[j] = (f1[j] * PSame1[iRate] + (1.0-f1[j]) * PDiff1[iRate]) in PosteriorProfile()
4940 PSame1 = myfree(PSame1, sizeof(double) * rates->nRateCategories); in PosteriorProfile()