Searched refs:PStop (Results 1 – 6 of 6) sorted by relevance
283 bool PStop(bool includeall = true) const; // has premature stop(s)528 …bool PStop(bool includeall = true) const { return m_cds_info.PStop(includeall); } // has prematur… in PStop() function in CGeneModel
505 if(PStop()) { in GetProtein()533 if(PStop()) { in GetProtein()
456 if(a.PStop(false) || !a.FrameShifts().empty()) in IsAllowedAlternative()458 if(front()->PStop(false) || !front()->FrameShifts().empty()) in IsAllowedAlternative()896 …if(!model.PStop(false) || algn.PStop(false) || !algn.FrameShifts().empty()) // use only for pstops in ReplacePseudoGeneSeeds()2124 if((algn.Type()&CGeneModel::eProt) && !algn.PStop()) in ReplicatePStops()2177 if(cds.PStop()) in ReplicatePStops()3175 if(chain.Score() == BadScore() || chain.PStop(false)) in MakeChains()4901 if(cds.PStop()) { in ClipChain()5069 …if(!has_stop && cds_info_t.PStop(false)) { //find stop inside p… in SetConfirmedEnds()6308 if(align.PStop()) { in FindSelenoproteinsClipProteinsToStartStop()6343 …) == orig->Limits() && (!align.HasStart() || !align.FrameShifts().empty() || align.PStop(false))) { in FindSelenoproteinsClipProteinsToStartStop()
714 if (it->PStop(false) || !it->FrameShifts().empty()) { in Predict()
290 if(model.PStop()) { in create_cdregion_feature()
651 bool CCDSInfo::PStop(bool includeall) const in PStop() function in CCDSInfo