Searched refs:PStops (Results 1 – 9 of 9) sorted by relevance
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/ |
| H A D | select_alignments_alt.cpp | 82 …ngFrame().IntersectingWith(b.ReadingFrame()) || a.GetCdsInfo().PStops() != b.GetCdsInfo().PStops()) in AreSimilar()
|
| H A D | annot.cpp | 691 CCDSInfo::TPStops pstops = cds_info.PStops(); in Predict()
708 ITERATE(CCDSInfo::TPStops, stp, it->GetCdsInfo().PStops()) { in Predict()
|
| H A D | gnomon_objmgr.cpp | 511 ITERATE(CCDSInfo::TPStops, stp, cds_info.PStops()) { in GetProtein()
539 ITERATE(CCDSInfo::TPStops, stp, cds_info.PStops()) { in GetProtein()
|
| H A D | chainer.cpp | 2101 ITERATE(CCDSInfo::TPStops, s, algn.GetCdsInfo().PStops()) { in ReplicatePStops()
2135 CCDSInfo::TPStops pstops = cds.PStops(); in ReplicatePStops()
4057 CCDSInfo::TPStops istops = itt->GetCdsInfo().PStops(); in CombineCompatibleChains()
4074 CCDSInfo::TPStops jstops = jtt->GetCdsInfo().PStops(); in CombineCompatibleChains()
4505 … for(int is = 0; is < (int)GetCdsInfo().PStops().size() && !divided_pstop; ++is) { in CalculateSupportAndWeightFromMembers()
4506 const TSignedSeqRange& s = GetCdsInfo().PStops()[is]; in CalculateSupportAndWeightFromMembers()
4807 CCDSInfo::TPStops pstops = cds.PStops(); in RestoreReasonableConfirmedStart()
4903 for(auto& pstop : cds.PStops()) { in ClipChain()
4907 if(pstops.size() != cds.PStops().size()) { in ClipChain()
5070 CCDSInfo::TPStops pstops = cds_info_t.PStops(); in SetConfirmedEnds()
[all …]
|
| H A D | gnomon_model.cpp | 318 ITERATE(TPStops, i, PStops()) { in MapFromEditedToOrig()
355 ITERATE(TPStops, i, PStops()) { in MapFromOrigToEdited()
1802 ITERATE(CCDSInfo::TPStops, s, cds_info.PStops()) { in CollectAttributes()
|
| H A D | parse.cpp | 696 ITERATE(CCDSInfo::TPStops,s,gene.GetCdsInfo().PStops()) in GetGenes()
|
| H A D | score.cpp | 1403 …if((cds_info.ReadingFrame().NotEmpty() || !cds_info.PStops().empty()) && cds_info.IsMappedToGenome… in GetScore()
1407 CCDSInfo::TPStops pstops = cds_info.PStops(); in GetScore()
|
| H A D | asn1.cpp | 292 ITERATE(CCDSInfo::TPStops,s,cds.PStops()) { in create_cdregion_feature()
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/ |
| H A D | gnomon_model.hpp | 282 const TPStops& PStops() const { return m_p_stops; } in PStops() function in CCDSInfo
561 …GetCdsInfo().PStops() == a.GetCdsInfo().PStops() && Type() == a.Type() && Status() == a.Status(); } in IdenticalAlign()
|