Searched refs:PairLogLk (Results 1 – 1 of 1) sorted by relevance
| /dports/biology/fasttree/FastTree-2.1.10_5/ |
| H A D | FastTree-2.1.10.c | 1359 double PairLogLk(/*IN*/profile_t *p1, /*IN*/profile_t *p2, double length,
5176 double PairLogLk(profile_t *pA, profile_t *pB, double length, int nPos, in PairLogLk() function
5426 double loglk = PairLogLk(pA, pB, branch_lengths[0]+branch_lengths[1], in MLQuartetLogLk()
5428 + PairLogLk(pC, pD, branch_lengths[2]+branch_lengths[3], in MLQuartetLogLk()
5430 + PairLogLk(pAB, pCD, branch_lengths[4], in MLQuartetLogLk()
5494 double off = PairLogLk(pA, pB, in MLQuartetOptimize()
5497 + PairLogLk(pC, pD, in MLQuartetOptimize()
5577 PairLogLk(pABC, pD, branch_lengths[LEN_D], in MLQuartetOptimize()
5581 + PairLogLk(pAB, pC, branch_lengths[LEN_I] + branch_lengths[LEN_C], in MLQuartetOptimize()
5584 + PairLogLk(pA, pB, branch_lengths[LEN_A] + branch_lengths[LEN_B], in MLQuartetOptimize()
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