/dports/science/py-DendroPy/DendroPy-4.4.0/tests/data/chars/ |
H A D | sfs_test_single_pop_100x500_06.data.std.fasta | 1 >Pop1.Ind1.Chr1 3 >Pop1.Ind2.Chr1 5 >Pop1.Ind3.Chr1 7 >Pop1.Ind4.Chr1 9 >Pop1.Ind5.Chr1 11 >Pop1.Ind6.Chr1 13 >Pop1.Ind7.Chr1 15 >Pop1.Ind8.Chr1 17 >Pop1.Ind9.Chr1 19 >Pop1.Ind10.Chr1 [all …]
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H A D | sfs_test_single_pop_100x500_09.data.std.fasta | 1 >Pop1.Ind1.Chr1 3 >Pop1.Ind2.Chr1 5 >Pop1.Ind3.Chr1 7 >Pop1.Ind4.Chr1 9 >Pop1.Ind5.Chr1 11 >Pop1.Ind6.Chr1 13 >Pop1.Ind7.Chr1 15 >Pop1.Ind8.Chr1 17 >Pop1.Ind9.Chr1 19 >Pop1.Ind10.Chr1 [all …]
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H A D | sfs_test_single_pop_100x500_08.data.std.fasta | 1 >Pop1.Ind1.Chr1 3 >Pop1.Ind2.Chr1 5 >Pop1.Ind3.Chr1 7 >Pop1.Ind4.Chr1 9 >Pop1.Ind5.Chr1 11 >Pop1.Ind6.Chr1 13 >Pop1.Ind7.Chr1 15 >Pop1.Ind8.Chr1 17 >Pop1.Ind9.Chr1 19 >Pop1.Ind10.Chr1 [all …]
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H A D | sfs_test_single_pop_100x500_03.data.std.fasta | 1 >Pop1.Ind1.Chr1 3 >Pop1.Ind2.Chr1 5 >Pop1.Ind3.Chr1 7 >Pop1.Ind4.Chr1 9 >Pop1.Ind5.Chr1 11 >Pop1.Ind6.Chr1 13 >Pop1.Ind7.Chr1 15 >Pop1.Ind8.Chr1 17 >Pop1.Ind9.Chr1 19 >Pop1.Ind10.Chr1 [all …]
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H A D | sfs_test_single_pop_100x500_01.data.std.fasta | 1 >Pop1.Ind1.Chr1 3 >Pop1.Ind2.Chr1 5 >Pop1.Ind3.Chr1 7 >Pop1.Ind4.Chr1 9 >Pop1.Ind5.Chr1 11 >Pop1.Ind6.Chr1 13 >Pop1.Ind7.Chr1 15 >Pop1.Ind8.Chr1 17 >Pop1.Ind9.Chr1 19 >Pop1.Ind10.Chr1 [all …]
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H A D | sfs_test_single_pop_100x500_02.data.std.fasta | 1 >Pop1.Ind1.Chr1 3 >Pop1.Ind2.Chr1 5 >Pop1.Ind3.Chr1 7 >Pop1.Ind4.Chr1 9 >Pop1.Ind5.Chr1 11 >Pop1.Ind6.Chr1 13 >Pop1.Ind7.Chr1 15 >Pop1.Ind8.Chr1 17 >Pop1.Ind9.Chr1 19 >Pop1.Ind10.Chr1 [all …]
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H A D | sfs_test_single_pop_100x500_04.data.std.fasta | 1 >Pop1.Ind1.Chr1 3 >Pop1.Ind2.Chr1 5 >Pop1.Ind3.Chr1 7 >Pop1.Ind4.Chr1 9 >Pop1.Ind5.Chr1 11 >Pop1.Ind6.Chr1 13 >Pop1.Ind7.Chr1 15 >Pop1.Ind8.Chr1 17 >Pop1.Ind9.Chr1 19 >Pop1.Ind10.Chr1 [all …]
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H A D | sfs_test_single_pop_100x500_05.data.std.fasta | 1 >Pop1.Ind1.Chr1 3 >Pop1.Ind2.Chr1 5 >Pop1.Ind3.Chr1 7 >Pop1.Ind4.Chr1 9 >Pop1.Ind5.Chr1 11 >Pop1.Ind6.Chr1 13 >Pop1.Ind7.Chr1 15 >Pop1.Ind8.Chr1 17 >Pop1.Ind9.Chr1 19 >Pop1.Ind10.Chr1 [all …]
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H A D | sfs_test_single_pop_100x500_07.data.std.fasta | 1 >Pop1.Ind1.Chr1 3 >Pop1.Ind2.Chr1 5 >Pop1.Ind3.Chr1 7 >Pop1.Ind4.Chr1 9 >Pop1.Ind5.Chr1 11 >Pop1.Ind6.Chr1 13 >Pop1.Ind7.Chr1 15 >Pop1.Ind8.Chr1 17 >Pop1.Ind9.Chr1 19 >Pop1.Ind10.Chr1 [all …]
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H A D | sfs_test_single_pop_100x500_10.data.std.fasta | 1 >Pop1.Ind1.Chr1 3 >Pop1.Ind2.Chr1 5 >Pop1.Ind3.Chr1 7 >Pop1.Ind4.Chr1 9 >Pop1.Ind5.Chr1 11 >Pop1.Ind6.Chr1 13 >Pop1.Ind7.Chr1 15 >Pop1.Ind8.Chr1 17 >Pop1.Ind9.Chr1 19 >Pop1.Ind10.Chr1 [all …]
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H A D | sfs_test_single_pop_100x500_03.data.dna.fasta | 1 >Pop1.Ind1.Chr1 3 >Pop1.Ind2.Chr1 5 >Pop1.Ind3.Chr1 7 >Pop1.Ind4.Chr1 9 >Pop1.Ind5.Chr1 11 >Pop1.Ind6.Chr1 13 >Pop1.Ind7.Chr1 15 >Pop1.Ind8.Chr1 17 >Pop1.Ind9.Chr1 19 >Pop1.Ind10.Chr1 [all …]
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H A D | sfs_test_single_pop_100x500_04.data.dna.fasta | 1 >Pop1.Ind1.Chr1 3 >Pop1.Ind2.Chr1 5 >Pop1.Ind3.Chr1 7 >Pop1.Ind4.Chr1 9 >Pop1.Ind5.Chr1 11 >Pop1.Ind6.Chr1 13 >Pop1.Ind7.Chr1 15 >Pop1.Ind8.Chr1 17 >Pop1.Ind9.Chr1 19 >Pop1.Ind10.Chr1 [all …]
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H A D | sfs_test_single_pop_100x500_06.data.dna.fasta | 1 >Pop1.Ind1.Chr1 3 >Pop1.Ind2.Chr1 5 >Pop1.Ind3.Chr1 7 >Pop1.Ind4.Chr1 9 >Pop1.Ind5.Chr1 11 >Pop1.Ind6.Chr1 13 >Pop1.Ind7.Chr1 15 >Pop1.Ind8.Chr1 17 >Pop1.Ind9.Chr1 19 >Pop1.Ind10.Chr1 [all …]
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H A D | sfs_test_single_pop_100x500_09.data.dna.fasta | 1 >Pop1.Ind1.Chr1 3 >Pop1.Ind2.Chr1 5 >Pop1.Ind3.Chr1 7 >Pop1.Ind4.Chr1 9 >Pop1.Ind5.Chr1 11 >Pop1.Ind6.Chr1 13 >Pop1.Ind7.Chr1 15 >Pop1.Ind8.Chr1 17 >Pop1.Ind9.Chr1 19 >Pop1.Ind10.Chr1 [all …]
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H A D | sfs_test_single_pop_100x500_01.data.dna.fasta | 1 >Pop1.Ind1.Chr1 3 >Pop1.Ind2.Chr1 5 >Pop1.Ind3.Chr1 7 >Pop1.Ind4.Chr1 9 >Pop1.Ind5.Chr1 11 >Pop1.Ind6.Chr1 13 >Pop1.Ind7.Chr1 15 >Pop1.Ind8.Chr1 17 >Pop1.Ind9.Chr1 19 >Pop1.Ind10.Chr1 [all …]
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H A D | sfs_test_single_pop_100x500_02.data.dna.fasta | 1 >Pop1.Ind1.Chr1 3 >Pop1.Ind2.Chr1 5 >Pop1.Ind3.Chr1 7 >Pop1.Ind4.Chr1 9 >Pop1.Ind5.Chr1 11 >Pop1.Ind6.Chr1 13 >Pop1.Ind7.Chr1 15 >Pop1.Ind8.Chr1 17 >Pop1.Ind9.Chr1 19 >Pop1.Ind10.Chr1 [all …]
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H A D | sfs_test_single_pop_100x500_05.data.dna.fasta | 1 >Pop1.Ind1.Chr1 3 >Pop1.Ind2.Chr1 5 >Pop1.Ind3.Chr1 7 >Pop1.Ind4.Chr1 9 >Pop1.Ind5.Chr1 11 >Pop1.Ind6.Chr1 13 >Pop1.Ind7.Chr1 15 >Pop1.Ind8.Chr1 17 >Pop1.Ind9.Chr1 19 >Pop1.Ind10.Chr1 [all …]
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H A D | sfs_test_single_pop_100x500_07.data.dna.fasta | 1 >Pop1.Ind1.Chr1 3 >Pop1.Ind2.Chr1 5 >Pop1.Ind3.Chr1 7 >Pop1.Ind4.Chr1 9 >Pop1.Ind5.Chr1 11 >Pop1.Ind6.Chr1 13 >Pop1.Ind7.Chr1 15 >Pop1.Ind8.Chr1 17 >Pop1.Ind9.Chr1 19 >Pop1.Ind10.Chr1 [all …]
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H A D | sfs_test_single_pop_100x500_08.data.dna.fasta | 1 >Pop1.Ind1.Chr1 3 >Pop1.Ind2.Chr1 5 >Pop1.Ind3.Chr1 7 >Pop1.Ind4.Chr1 9 >Pop1.Ind5.Chr1 11 >Pop1.Ind6.Chr1 13 >Pop1.Ind7.Chr1 15 >Pop1.Ind8.Chr1 17 >Pop1.Ind9.Chr1 19 >Pop1.Ind10.Chr1 [all …]
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H A D | sfs_test_single_pop_100x500_10.data.dna.fasta | 1 >Pop1.Ind1.Chr1 3 >Pop1.Ind2.Chr1 5 >Pop1.Ind3.Chr1 7 >Pop1.Ind4.Chr1 9 >Pop1.Ind5.Chr1 11 >Pop1.Ind6.Chr1 13 >Pop1.Ind7.Chr1 15 >Pop1.Ind8.Chr1 17 >Pop1.Ind9.Chr1 19 >Pop1.Ind10.Chr1 [all …]
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/dports/devel/judy/judy-1.0.5/src/JudyCommon/ |
H A D | JudyDecascade.c | 59 assert(Pop1); 85 assert(Pop1); in j__udyCopy3to4() 110 assert(Pop1); in j__udyCopy4to5() 134 assert(Pop1); in j__udyCopy5to6() 160 assert(Pop1); in j__udyCopy6to7() 460 Pop1 = JU_JPBRANCH_POP0(Pjp, 1) + 1; assert(Pop1); in j__udyLeaf1ToLeaf2() 504 Pop1 = JU_JPBRANCH_POP0(Pjp, 1) + 1; assert(Pop1); in j__udyLeaf1ToLeaf2() 620 Pop1 = JU_JPLEAF_POP0(Pjp) + 1; assert(Pop1); in j__udyLeaf2ToLeaf3() 722 Pop1 = JU_JPLEAF_POP0(Pjp) + 1; assert(Pop1); in j__udyLeaf3ToLeaf4() 820 Pop1 = JU_JPLEAF_POP0(Pjp) + 1; assert(Pop1); in j__udyLeaf4ToLeaf5() [all …]
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/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/judy/ |
H A D | JudyDecascade.c | 57 assert(Pop1); 83 assert(Pop1); in j__udyCopy3to4() 108 assert(Pop1); in j__udyCopy4to5() 132 assert(Pop1); in j__udyCopy5to6() 158 assert(Pop1); in j__udyCopy6to7() 458 Pop1 = JU_JPBRANCH_POP0(Pjp, 1) + 1; assert(Pop1); in j__udyLeaf1ToLeaf2() 502 Pop1 = JU_JPBRANCH_POP0(Pjp, 1) + 1; assert(Pop1); in j__udyLeaf1ToLeaf2() 618 Pop1 = JU_JPLEAF_POP0(Pjp) + 1; assert(Pop1); in j__udyLeaf2ToLeaf3() 720 Pop1 = JU_JPLEAF_POP0(Pjp) + 1; assert(Pop1); in j__udyLeaf3ToLeaf4() 818 Pop1 = JU_JPLEAF_POP0(Pjp) + 1; assert(Pop1); in j__udyLeaf4ToLeaf5() [all …]
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H A D | JudyL.h | 429 #define JL_LEAF1VALUEAREA(Pjv,Pop1) (((PWord_t)(Pjv)) + j__L_Leaf1Offset[Pop1]) argument 430 #define JL_LEAF2VALUEAREA(Pjv,Pop1) (((PWord_t)(Pjv)) + j__L_Leaf2Offset[Pop1]) argument 440 #define JL_LEAF1POPTOWORDS(Pop1) (j__L_Leaf1PopToWords[Pop1]) argument 441 #define JL_LEAF2POPTOWORDS(Pop1) (j__L_Leaf2PopToWords[Pop1]) argument 442 #define JL_LEAF3POPTOWORDS(Pop1) (j__L_Leaf3PopToWords[Pop1]) argument 444 #define JL_LEAF4POPTOWORDS(Pop1) (j__L_Leaf4PopToWords[Pop1]) argument 445 #define JL_LEAF5POPTOWORDS(Pop1) (j__L_Leaf5PopToWords[Pop1]) argument 446 #define JL_LEAF6POPTOWORDS(Pop1) (j__L_Leaf6PopToWords[Pop1]) argument 447 #define JL_LEAF7POPTOWORDS(Pop1) (j__L_Leaf7PopToWords[Pop1]) argument 449 #define JL_LEAFWPOPTOWORDS(Pop1) (j__L_LeafWPopToWords[Pop1]) argument [all …]
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/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/klib/judy/ |
H A D | JudyDecascade.c | 57 assert(Pop1); 83 assert(Pop1); in j__udyCopy3to4() 108 assert(Pop1); in j__udyCopy4to5() 132 assert(Pop1); in j__udyCopy5to6() 158 assert(Pop1); in j__udyCopy6to7() 458 Pop1 = JU_JPBRANCH_POP0(Pjp, 1) + 1; assert(Pop1); in j__udyLeaf1ToLeaf2() 502 Pop1 = JU_JPBRANCH_POP0(Pjp, 1) + 1; assert(Pop1); in j__udyLeaf1ToLeaf2() 618 Pop1 = JU_JPLEAF_POP0(Pjp) + 1; assert(Pop1); in j__udyLeaf2ToLeaf3() 720 Pop1 = JU_JPLEAF_POP0(Pjp) + 1; assert(Pop1); in j__udyLeaf3ToLeaf4() 818 Pop1 = JU_JPLEAF_POP0(Pjp) + 1; assert(Pop1); in j__udyLeaf4ToLeaf5() [all …]
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/dports/devel/judy/judy-1.0.5/src/JudyL/ |
H A D | JudyL.h | 431 #define JL_LEAF1VALUEAREA(Pjv,Pop1) (((PWord_t)(Pjv)) + j__L_Leaf1Offset[Pop1]) argument 432 #define JL_LEAF2VALUEAREA(Pjv,Pop1) (((PWord_t)(Pjv)) + j__L_Leaf2Offset[Pop1]) argument 442 #define JL_LEAF1POPTOWORDS(Pop1) (j__L_Leaf1PopToWords[Pop1]) argument 443 #define JL_LEAF2POPTOWORDS(Pop1) (j__L_Leaf2PopToWords[Pop1]) argument 444 #define JL_LEAF3POPTOWORDS(Pop1) (j__L_Leaf3PopToWords[Pop1]) argument 446 #define JL_LEAF4POPTOWORDS(Pop1) (j__L_Leaf4PopToWords[Pop1]) argument 447 #define JL_LEAF5POPTOWORDS(Pop1) (j__L_Leaf5PopToWords[Pop1]) argument 448 #define JL_LEAF6POPTOWORDS(Pop1) (j__L_Leaf6PopToWords[Pop1]) argument 449 #define JL_LEAF7POPTOWORDS(Pop1) (j__L_Leaf7PopToWords[Pop1]) argument 451 #define JL_LEAFWPOPTOWORDS(Pop1) (j__L_LeafWPopToWords[Pop1]) argument [all …]
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