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/dports/science/py-DendroPy/DendroPy-4.4.0/tests/data/chars/
H A Dsfs_test_single_pop_100x500_06.data.std.fasta1 >Pop1.Ind1.Chr1
3 >Pop1.Ind2.Chr1
5 >Pop1.Ind3.Chr1
7 >Pop1.Ind4.Chr1
9 >Pop1.Ind5.Chr1
11 >Pop1.Ind6.Chr1
13 >Pop1.Ind7.Chr1
15 >Pop1.Ind8.Chr1
17 >Pop1.Ind9.Chr1
19 >Pop1.Ind10.Chr1
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H A Dsfs_test_single_pop_100x500_09.data.std.fasta1 >Pop1.Ind1.Chr1
3 >Pop1.Ind2.Chr1
5 >Pop1.Ind3.Chr1
7 >Pop1.Ind4.Chr1
9 >Pop1.Ind5.Chr1
11 >Pop1.Ind6.Chr1
13 >Pop1.Ind7.Chr1
15 >Pop1.Ind8.Chr1
17 >Pop1.Ind9.Chr1
19 >Pop1.Ind10.Chr1
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H A Dsfs_test_single_pop_100x500_08.data.std.fasta1 >Pop1.Ind1.Chr1
3 >Pop1.Ind2.Chr1
5 >Pop1.Ind3.Chr1
7 >Pop1.Ind4.Chr1
9 >Pop1.Ind5.Chr1
11 >Pop1.Ind6.Chr1
13 >Pop1.Ind7.Chr1
15 >Pop1.Ind8.Chr1
17 >Pop1.Ind9.Chr1
19 >Pop1.Ind10.Chr1
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H A Dsfs_test_single_pop_100x500_03.data.std.fasta1 >Pop1.Ind1.Chr1
3 >Pop1.Ind2.Chr1
5 >Pop1.Ind3.Chr1
7 >Pop1.Ind4.Chr1
9 >Pop1.Ind5.Chr1
11 >Pop1.Ind6.Chr1
13 >Pop1.Ind7.Chr1
15 >Pop1.Ind8.Chr1
17 >Pop1.Ind9.Chr1
19 >Pop1.Ind10.Chr1
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H A Dsfs_test_single_pop_100x500_01.data.std.fasta1 >Pop1.Ind1.Chr1
3 >Pop1.Ind2.Chr1
5 >Pop1.Ind3.Chr1
7 >Pop1.Ind4.Chr1
9 >Pop1.Ind5.Chr1
11 >Pop1.Ind6.Chr1
13 >Pop1.Ind7.Chr1
15 >Pop1.Ind8.Chr1
17 >Pop1.Ind9.Chr1
19 >Pop1.Ind10.Chr1
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H A Dsfs_test_single_pop_100x500_02.data.std.fasta1 >Pop1.Ind1.Chr1
3 >Pop1.Ind2.Chr1
5 >Pop1.Ind3.Chr1
7 >Pop1.Ind4.Chr1
9 >Pop1.Ind5.Chr1
11 >Pop1.Ind6.Chr1
13 >Pop1.Ind7.Chr1
15 >Pop1.Ind8.Chr1
17 >Pop1.Ind9.Chr1
19 >Pop1.Ind10.Chr1
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H A Dsfs_test_single_pop_100x500_04.data.std.fasta1 >Pop1.Ind1.Chr1
3 >Pop1.Ind2.Chr1
5 >Pop1.Ind3.Chr1
7 >Pop1.Ind4.Chr1
9 >Pop1.Ind5.Chr1
11 >Pop1.Ind6.Chr1
13 >Pop1.Ind7.Chr1
15 >Pop1.Ind8.Chr1
17 >Pop1.Ind9.Chr1
19 >Pop1.Ind10.Chr1
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H A Dsfs_test_single_pop_100x500_05.data.std.fasta1 >Pop1.Ind1.Chr1
3 >Pop1.Ind2.Chr1
5 >Pop1.Ind3.Chr1
7 >Pop1.Ind4.Chr1
9 >Pop1.Ind5.Chr1
11 >Pop1.Ind6.Chr1
13 >Pop1.Ind7.Chr1
15 >Pop1.Ind8.Chr1
17 >Pop1.Ind9.Chr1
19 >Pop1.Ind10.Chr1
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H A Dsfs_test_single_pop_100x500_07.data.std.fasta1 >Pop1.Ind1.Chr1
3 >Pop1.Ind2.Chr1
5 >Pop1.Ind3.Chr1
7 >Pop1.Ind4.Chr1
9 >Pop1.Ind5.Chr1
11 >Pop1.Ind6.Chr1
13 >Pop1.Ind7.Chr1
15 >Pop1.Ind8.Chr1
17 >Pop1.Ind9.Chr1
19 >Pop1.Ind10.Chr1
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H A Dsfs_test_single_pop_100x500_10.data.std.fasta1 >Pop1.Ind1.Chr1
3 >Pop1.Ind2.Chr1
5 >Pop1.Ind3.Chr1
7 >Pop1.Ind4.Chr1
9 >Pop1.Ind5.Chr1
11 >Pop1.Ind6.Chr1
13 >Pop1.Ind7.Chr1
15 >Pop1.Ind8.Chr1
17 >Pop1.Ind9.Chr1
19 >Pop1.Ind10.Chr1
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H A Dsfs_test_single_pop_100x500_03.data.dna.fasta1 >Pop1.Ind1.Chr1
3 >Pop1.Ind2.Chr1
5 >Pop1.Ind3.Chr1
7 >Pop1.Ind4.Chr1
9 >Pop1.Ind5.Chr1
11 >Pop1.Ind6.Chr1
13 >Pop1.Ind7.Chr1
15 >Pop1.Ind8.Chr1
17 >Pop1.Ind9.Chr1
19 >Pop1.Ind10.Chr1
[all …]
H A Dsfs_test_single_pop_100x500_04.data.dna.fasta1 >Pop1.Ind1.Chr1
3 >Pop1.Ind2.Chr1
5 >Pop1.Ind3.Chr1
7 >Pop1.Ind4.Chr1
9 >Pop1.Ind5.Chr1
11 >Pop1.Ind6.Chr1
13 >Pop1.Ind7.Chr1
15 >Pop1.Ind8.Chr1
17 >Pop1.Ind9.Chr1
19 >Pop1.Ind10.Chr1
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H A Dsfs_test_single_pop_100x500_06.data.dna.fasta1 >Pop1.Ind1.Chr1
3 >Pop1.Ind2.Chr1
5 >Pop1.Ind3.Chr1
7 >Pop1.Ind4.Chr1
9 >Pop1.Ind5.Chr1
11 >Pop1.Ind6.Chr1
13 >Pop1.Ind7.Chr1
15 >Pop1.Ind8.Chr1
17 >Pop1.Ind9.Chr1
19 >Pop1.Ind10.Chr1
[all …]
H A Dsfs_test_single_pop_100x500_09.data.dna.fasta1 >Pop1.Ind1.Chr1
3 >Pop1.Ind2.Chr1
5 >Pop1.Ind3.Chr1
7 >Pop1.Ind4.Chr1
9 >Pop1.Ind5.Chr1
11 >Pop1.Ind6.Chr1
13 >Pop1.Ind7.Chr1
15 >Pop1.Ind8.Chr1
17 >Pop1.Ind9.Chr1
19 >Pop1.Ind10.Chr1
[all …]
H A Dsfs_test_single_pop_100x500_01.data.dna.fasta1 >Pop1.Ind1.Chr1
3 >Pop1.Ind2.Chr1
5 >Pop1.Ind3.Chr1
7 >Pop1.Ind4.Chr1
9 >Pop1.Ind5.Chr1
11 >Pop1.Ind6.Chr1
13 >Pop1.Ind7.Chr1
15 >Pop1.Ind8.Chr1
17 >Pop1.Ind9.Chr1
19 >Pop1.Ind10.Chr1
[all …]
H A Dsfs_test_single_pop_100x500_02.data.dna.fasta1 >Pop1.Ind1.Chr1
3 >Pop1.Ind2.Chr1
5 >Pop1.Ind3.Chr1
7 >Pop1.Ind4.Chr1
9 >Pop1.Ind5.Chr1
11 >Pop1.Ind6.Chr1
13 >Pop1.Ind7.Chr1
15 >Pop1.Ind8.Chr1
17 >Pop1.Ind9.Chr1
19 >Pop1.Ind10.Chr1
[all …]
H A Dsfs_test_single_pop_100x500_05.data.dna.fasta1 >Pop1.Ind1.Chr1
3 >Pop1.Ind2.Chr1
5 >Pop1.Ind3.Chr1
7 >Pop1.Ind4.Chr1
9 >Pop1.Ind5.Chr1
11 >Pop1.Ind6.Chr1
13 >Pop1.Ind7.Chr1
15 >Pop1.Ind8.Chr1
17 >Pop1.Ind9.Chr1
19 >Pop1.Ind10.Chr1
[all …]
H A Dsfs_test_single_pop_100x500_07.data.dna.fasta1 >Pop1.Ind1.Chr1
3 >Pop1.Ind2.Chr1
5 >Pop1.Ind3.Chr1
7 >Pop1.Ind4.Chr1
9 >Pop1.Ind5.Chr1
11 >Pop1.Ind6.Chr1
13 >Pop1.Ind7.Chr1
15 >Pop1.Ind8.Chr1
17 >Pop1.Ind9.Chr1
19 >Pop1.Ind10.Chr1
[all …]
H A Dsfs_test_single_pop_100x500_08.data.dna.fasta1 >Pop1.Ind1.Chr1
3 >Pop1.Ind2.Chr1
5 >Pop1.Ind3.Chr1
7 >Pop1.Ind4.Chr1
9 >Pop1.Ind5.Chr1
11 >Pop1.Ind6.Chr1
13 >Pop1.Ind7.Chr1
15 >Pop1.Ind8.Chr1
17 >Pop1.Ind9.Chr1
19 >Pop1.Ind10.Chr1
[all …]
H A Dsfs_test_single_pop_100x500_10.data.dna.fasta1 >Pop1.Ind1.Chr1
3 >Pop1.Ind2.Chr1
5 >Pop1.Ind3.Chr1
7 >Pop1.Ind4.Chr1
9 >Pop1.Ind5.Chr1
11 >Pop1.Ind6.Chr1
13 >Pop1.Ind7.Chr1
15 >Pop1.Ind8.Chr1
17 >Pop1.Ind9.Chr1
19 >Pop1.Ind10.Chr1
[all …]
/dports/devel/judy/judy-1.0.5/src/JudyCommon/
H A DJudyDecascade.c59 assert(Pop1);
85 assert(Pop1); in j__udyCopy3to4()
110 assert(Pop1); in j__udyCopy4to5()
134 assert(Pop1); in j__udyCopy5to6()
160 assert(Pop1); in j__udyCopy6to7()
460 Pop1 = JU_JPBRANCH_POP0(Pjp, 1) + 1; assert(Pop1); in j__udyLeaf1ToLeaf2()
504 Pop1 = JU_JPBRANCH_POP0(Pjp, 1) + 1; assert(Pop1); in j__udyLeaf1ToLeaf2()
620 Pop1 = JU_JPLEAF_POP0(Pjp) + 1; assert(Pop1); in j__udyLeaf2ToLeaf3()
722 Pop1 = JU_JPLEAF_POP0(Pjp) + 1; assert(Pop1); in j__udyLeaf3ToLeaf4()
820 Pop1 = JU_JPLEAF_POP0(Pjp) + 1; assert(Pop1); in j__udyLeaf4ToLeaf5()
[all …]
/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/judy/
H A DJudyDecascade.c57 assert(Pop1);
83 assert(Pop1); in j__udyCopy3to4()
108 assert(Pop1); in j__udyCopy4to5()
132 assert(Pop1); in j__udyCopy5to6()
158 assert(Pop1); in j__udyCopy6to7()
458 Pop1 = JU_JPBRANCH_POP0(Pjp, 1) + 1; assert(Pop1); in j__udyLeaf1ToLeaf2()
502 Pop1 = JU_JPBRANCH_POP0(Pjp, 1) + 1; assert(Pop1); in j__udyLeaf1ToLeaf2()
618 Pop1 = JU_JPLEAF_POP0(Pjp) + 1; assert(Pop1); in j__udyLeaf2ToLeaf3()
720 Pop1 = JU_JPLEAF_POP0(Pjp) + 1; assert(Pop1); in j__udyLeaf3ToLeaf4()
818 Pop1 = JU_JPLEAF_POP0(Pjp) + 1; assert(Pop1); in j__udyLeaf4ToLeaf5()
[all …]
H A DJudyL.h429 #define JL_LEAF1VALUEAREA(Pjv,Pop1) (((PWord_t)(Pjv)) + j__L_Leaf1Offset[Pop1]) argument
430 #define JL_LEAF2VALUEAREA(Pjv,Pop1) (((PWord_t)(Pjv)) + j__L_Leaf2Offset[Pop1]) argument
440 #define JL_LEAF1POPTOWORDS(Pop1) (j__L_Leaf1PopToWords[Pop1]) argument
441 #define JL_LEAF2POPTOWORDS(Pop1) (j__L_Leaf2PopToWords[Pop1]) argument
442 #define JL_LEAF3POPTOWORDS(Pop1) (j__L_Leaf3PopToWords[Pop1]) argument
444 #define JL_LEAF4POPTOWORDS(Pop1) (j__L_Leaf4PopToWords[Pop1]) argument
445 #define JL_LEAF5POPTOWORDS(Pop1) (j__L_Leaf5PopToWords[Pop1]) argument
446 #define JL_LEAF6POPTOWORDS(Pop1) (j__L_Leaf6PopToWords[Pop1]) argument
447 #define JL_LEAF7POPTOWORDS(Pop1) (j__L_Leaf7PopToWords[Pop1]) argument
449 #define JL_LEAFWPOPTOWORDS(Pop1) (j__L_LeafWPopToWords[Pop1]) argument
[all …]
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/klib/judy/
H A DJudyDecascade.c57 assert(Pop1);
83 assert(Pop1); in j__udyCopy3to4()
108 assert(Pop1); in j__udyCopy4to5()
132 assert(Pop1); in j__udyCopy5to6()
158 assert(Pop1); in j__udyCopy6to7()
458 Pop1 = JU_JPBRANCH_POP0(Pjp, 1) + 1; assert(Pop1); in j__udyLeaf1ToLeaf2()
502 Pop1 = JU_JPBRANCH_POP0(Pjp, 1) + 1; assert(Pop1); in j__udyLeaf1ToLeaf2()
618 Pop1 = JU_JPLEAF_POP0(Pjp) + 1; assert(Pop1); in j__udyLeaf2ToLeaf3()
720 Pop1 = JU_JPLEAF_POP0(Pjp) + 1; assert(Pop1); in j__udyLeaf3ToLeaf4()
818 Pop1 = JU_JPLEAF_POP0(Pjp) + 1; assert(Pop1); in j__udyLeaf4ToLeaf5()
[all …]
/dports/devel/judy/judy-1.0.5/src/JudyL/
H A DJudyL.h431 #define JL_LEAF1VALUEAREA(Pjv,Pop1) (((PWord_t)(Pjv)) + j__L_Leaf1Offset[Pop1]) argument
432 #define JL_LEAF2VALUEAREA(Pjv,Pop1) (((PWord_t)(Pjv)) + j__L_Leaf2Offset[Pop1]) argument
442 #define JL_LEAF1POPTOWORDS(Pop1) (j__L_Leaf1PopToWords[Pop1]) argument
443 #define JL_LEAF2POPTOWORDS(Pop1) (j__L_Leaf2PopToWords[Pop1]) argument
444 #define JL_LEAF3POPTOWORDS(Pop1) (j__L_Leaf3PopToWords[Pop1]) argument
446 #define JL_LEAF4POPTOWORDS(Pop1) (j__L_Leaf4PopToWords[Pop1]) argument
447 #define JL_LEAF5POPTOWORDS(Pop1) (j__L_Leaf5PopToWords[Pop1]) argument
448 #define JL_LEAF6POPTOWORDS(Pop1) (j__L_Leaf6PopToWords[Pop1]) argument
449 #define JL_LEAF7POPTOWORDS(Pop1) (j__L_Leaf7PopToWords[Pop1]) argument
451 #define JL_LEAFWPOPTOWORDS(Pop1) (j__L_LeafWPopToWords[Pop1]) argument
[all …]

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