Searched refs:RECODE_BIMBAM (Results 1 – 3 of 3) sorted by relevance
12076 …ECODE_23 | RECODE_A_TRANSPOSE | RECODE_BEAGLE | RECODE_BEAGLE_NOMAP | RECODE_BIMBAM | RECODE_BIMBA… in recode()12092 … && (!(recode_modifier & (RECODE_A | RECODE_A_TRANSPOSE | RECODE_AD | RECODE_BIMBAM | RECODE_FASTP… in recode()12107 …if (recode_modifier & (RECODE_A_TRANSPOSE | RECODE_BEAGLE | RECODE_BEAGLE_NOMAP | RECODE_BIMBAM | … in recode()12230 } else if (recode_modifier & (RECODE_BIMBAM | RECODE_BIMBAM_1CHR)) { in recode()13325 } else if (recode_modifier & (RECODE_BIMBAM | RECODE_BIMBAM_1CHR)) { in recode()13350 ulii = recode_modifier & RECODE_BIMBAM; in recode()
536 #define RECODE_BIMBAM 0x400 macro
10588 if (recode_type_set(&recode_modifier, RECODE_BIMBAM)) { in main()12907 …} else if ((recode_modifier & RECODE_BIMBAM) && (misc_flags & MISC_ALLOW_EXTRA_CHROMS) && (!chrom_… in main()