Searched refs:RECODE_VCF (Results 1 – 3 of 3) sorted by relevance
1187 …alculation_type & CALC_RECODE) && (((recode_modifier & (RECODE_VCF | RECODE_BGZ)) == (RECODE_VCF |… in plink()3818 recode_modifier |= RECODE_VCF; in main()10509 } else if (recode_modifier & RECODE_VCF) { in main()10636 if (recode_modifier & RECODE_VCF) { in main()10643 if (recode_type_set(&recode_modifier, RECODE_VCF)) { in main()10647 if (recode_modifier & (RECODE_VCF | RECODE_IID)) { in main()10652 if (recode_type_set(&recode_modifier, RECODE_VCF)) { in main()10657 if (recode_modifier & (RECODE_VCF | RECODE_FID)) { in main()10662 if (recode_type_set(&recode_modifier, RECODE_VCF)) { in main()10695 if ((recode_modifier & RECODE_BGZ) && (!(recode_modifier & RECODE_VCF))) { in main()
11988 uint32_t vcf_not_fid = (recode_modifier & RECODE_VCF) && (!(recode_modifier & RECODE_FID)); in recode()11989 uint32_t vcf_not_iid = (recode_modifier & RECODE_VCF) && (!(recode_modifier & RECODE_IID)); in recode()12075 if (set_hh_missing || set_mixed_mt_missing || (recode_modifier & RECODE_VCF)) { in recode()12076 … | RECODE_LGEN_REF | RECODE_LIST | RECODE_OXFORD | RECODE_RLIST | RECODE_TRANSPOSE | RECODE_VCF)) { in recode()12079 …male, unfiltered_sample_ct, sample_ct, hh_exists | ((recode_modifier & RECODE_VCF)? XMHH_EXISTS : … in recode()12107 … | RECODE_LGEN_REF | RECODE_LIST | RECODE_OXFORD | RECODE_RLIST | RECODE_TRANSPOSE | RECODE_VCF)) { in recode()12138 if (recode_modifier & RECODE_VCF) { in recode()12501 …FASTPHASE | RECODE_FASTPHASE_1CHR | RECODE_LGEN | RECODE_LGEN_REF | RECODE_OXFORD | RECODE_VCF))) { in recode()12509 } else if (recode_modifier & RECODE_VCF) { in recode()12746 } else if (recode_modifier & RECODE_VCF) { in recode()
551 #define RECODE_VCF 0x2000000 macro