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Searched refs:RET_OPEN_FAIL (Results 1 – 23 of 23) sorted by relevance

/dports/biology/plink/plink-ng-79b2df8c/1.9/
H A Dbgen_to_gen.c443 retval = RET_OPEN_FAIL; in bgen_to_gen()
467 return RET_OPEN_FAIL; in init_logfile()
600 retval = RET_OPEN_FAIL; in main()
H A Dprettify.c22 #define RET_OPEN_FAIL 3 macro
409 retval = RET_OPEN_FAIL; in pretty_write()
625 retval = RET_OPEN_FAIL; in main()
H A Dplink_cnv.c321 retval = RET_OPEN_FAIL; in cnv_intersect_load()
688 retval = RET_OPEN_FAIL; in cnv_make_map()
838 retval = RET_OPEN_FAIL; in validate_cnv_map()
1042 retval = RET_OPEN_FAIL; in plink_cnv()
H A Ddbl2txt.c9 #define RET_OPEN_FAIL 2 macro
608 retval = RET_OPEN_FAIL; in main()
H A Dplink_misc.c150 retval = RET_OPEN_FAIL; in write_nosex()
633 retval = RET_OPEN_FAIL; in apply_cm_map()
1192 retval = RET_OPEN_FAIL; in update_marker_alleles()
1348 retval = RET_OPEN_FAIL; in flip_strand()
1441 retval = RET_OPEN_FAIL; in update_sample_ids()
1542 retval = RET_OPEN_FAIL; in update_sample_parents()
1657 retval = RET_OPEN_FAIL; in update_sample_sexes()
2178 retval = RET_OPEN_FAIL; in read_external_freqs()
2649 retval = RET_OPEN_FAIL; in write_stratified_freqs()
2833 retval = RET_OPEN_FAIL; in write_cc_freqs()
[all …]
H A Dplink_filter.c178 retval = RET_OPEN_FAIL; in keep_or_remove()
412 retval = RET_OPEN_FAIL; in extract_exclude_flag_norange()
1439 retval = RET_OPEN_FAIL; in load_oblig_missing()
1536 retval = RET_OPEN_FAIL; in filter_samples_file()
1757 retval = RET_OPEN_FAIL; in mind_filter()
2476 retval = RET_OPEN_FAIL; in calc_freqs_and_hwe()
2824 retval = RET_OPEN_FAIL; in write_missingness_reports()
3054 retval = RET_OPEN_FAIL; in hardy_report()
H A Dplink_data.c188 retval = RET_OPEN_FAIL; in sample_major_to_snp_major()
375 retval = RET_OPEN_FAIL; in load_map()
1150 retval = RET_OPEN_FAIL; in load_bim()
1670 retval = RET_OPEN_FAIL; in load_covars()
2094 retval = RET_OPEN_FAIL; in write_covars()
2273 retval = RET_OPEN_FAIL; in zero_cluster_init()
2342 retval = RET_OPEN_FAIL; in write_fam()
2408 retval = RET_OPEN_FAIL; in write_map_or_bim()
2459 retval = RET_OPEN_FAIL; in load_bim_split_chrom()
2757 retval = RET_OPEN_FAIL; in sort_and_write_bim()
[all …]
H A Dplink_set.c644 retval = RET_OPEN_FAIL; in extract_exclude_range()
1660 retval = RET_OPEN_FAIL; in define_sets()
1879 retval = RET_OPEN_FAIL; in write_set()
2339 retval = RET_OPEN_FAIL; in load_range_list_sortpos()
2387 retval = RET_OPEN_FAIL; in scrape_extra_chroms()
3217 retval = RET_OPEN_FAIL; in annotate()
3699 retval = RET_OPEN_FAIL; in gene_report()
H A Dplink_cluster.c563 retval = RET_OPEN_FAIL; in load_clusters()
689 retval = RET_OPEN_FAIL; in write_clusters()
781 retval = RET_OPEN_FAIL; in extract_clusters()
1272 retval = RET_OPEN_FAIL; in read_dists()
1946 retval = RET_OPEN_FAIL; in cluster_enforce_match()
2905 retval = RET_OPEN_FAIL; in write_cluster_solution()
3202 retval = RET_OPEN_FAIL; in mds_plot()
3511 retval = RET_OPEN_FAIL; in mds_plot_eigendecomp()
H A Ddose2plink.c107 #define RET_OPEN_FAIL 3 macro
1403 retval = RET_OPEN_FAIL; in main()
H A Dplink_rserve.c471 retval = RET_OPEN_FAIL; in rserve_call()
H A Dplink_lasso.c620 retval = RET_OPEN_FAIL; in lasso_lambda()
1258 retval = RET_OPEN_FAIL; in lasso()
H A Dplink_calc.c2663 retval = RET_OPEN_FAIL; in unrelated_herit_batch()
3254 return RET_OPEN_FAIL; in write_ids()
4215 retval = RET_OPEN_FAIL; in distance_d_write()
5040 retval = RET_OPEN_FAIL; in calc_genome()
5951 retval = RET_OPEN_FAIL; in rel_cutoff_batch()
6348 retval = RET_OPEN_FAIL; in load_distance_wts()
6965 retval = RET_OPEN_FAIL; in calc_rel()
7437 retval = RET_OPEN_FAIL; in calc_pca()
8200 retval = RET_OPEN_FAIL; in calc_distance()
9226 retval = RET_OPEN_FAIL; in calc_cluster_neighbor()
H A Dplink_perm.c859 retval = RET_OPEN_FAIL; in make_perm_pheno()
H A Dplink_ld.c742 retval = RET_OPEN_FAIL; in ld_prune_write()
1919 retval = RET_OPEN_FAIL; in flipscan()
2578 retval = RET_OPEN_FAIL; in ld_report_matrix()
6193 retval = RET_OPEN_FAIL; in ld_report_regular()
6746 retval = RET_OPEN_FAIL; in show_tags()
7625 retval = RET_OPEN_FAIL; in haploview_blocks()
8312 retval = RET_OPEN_FAIL; in twolocus()
8847 retval = RET_OPEN_FAIL; in epistasis_linear_regression()
9324 retval = RET_OPEN_FAIL; in epistasis_logistic_regression()
10368 retval = RET_OPEN_FAIL; in epistasis_report()
[all …]
H A Dplink_family.c1234 retval = RET_OPEN_FAIL; in mendel_error_scan()
1970 retval = RET_OPEN_FAIL; in tdt_poo()
2520 retval = RET_OPEN_FAIL; in tdt()
4937 retval = RET_OPEN_FAIL; in dfam()
5937 retval = RET_OPEN_FAIL; in qfam()
6334 retval = RET_OPEN_FAIL; in make_pseudocontrols()
H A Dplink_dosage.c461 retval = RET_OPEN_FAIL; in dosage_load_score_files()
2309 retval = RET_OPEN_FAIL; in plink1_dosage()
H A Dplink_homozyg.c652 retval = RET_OPEN_FAIL; in write_main_roh_reports()
2411 retval = RET_OPEN_FAIL; in roh_pool()
H A Dplink_assoc.c567 retval = RET_OPEN_FAIL; in multcomp()
7755 retval = RET_OPEN_FAIL; in model_assoc()
9090 retval = RET_OPEN_FAIL; in qassoc()
9581 retval = RET_OPEN_FAIL; in gxe_assoc()
10744 retval = RET_OPEN_FAIL; in testmiss()
11354 retval = RET_OPEN_FAIL; in cmh_assoc()
11608 retval = RET_OPEN_FAIL; in cmh2_assoc()
11866 retval = RET_OPEN_FAIL; in homog_assoc()
H A Dplink_glm.c277 retval = RET_OPEN_FAIL; in glm_scan_conditions()
5588 retval = RET_OPEN_FAIL; in glm_linear_assoc()
7024 retval = RET_OPEN_FAIL; in glm_logistic_assoc()
7885 retval = RET_OPEN_FAIL; in glm_linear_nosnp()
8669 retval = RET_OPEN_FAIL; in glm_logistic_nosnp()
H A Dplink_common.c236 return RET_OPEN_FAIL; in gzopen_read_checked()
9736 retval = RET_OPEN_FAIL; in open_and_size_string_list()
9780 return RET_OPEN_FAIL; in open_and_skip_first_lines()
9842 return RET_OPEN_FAIL; in open_and_load_to_first_token()
H A Dplink.c2150 retval = RET_OPEN_FAIL; in plink()
2697 retval = RET_OPEN_FAIL; in rerun()
2739 return RET_OPEN_FAIL; in alloc_fname()
2818 return RET_OPEN_FAIL; in alloc_2col()
13527 retval = RET_OPEN_FAIL; in main()
H A Dplink_common.h310 #define RET_OPEN_FAIL 2 macro