/dports/biology/plink/plink-ng-79b2df8c/1.9/ |
H A D | bgen_to_gen.c | 443 retval = RET_OPEN_FAIL; in bgen_to_gen() 467 return RET_OPEN_FAIL; in init_logfile() 600 retval = RET_OPEN_FAIL; in main()
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H A D | prettify.c | 22 #define RET_OPEN_FAIL 3 macro 409 retval = RET_OPEN_FAIL; in pretty_write() 625 retval = RET_OPEN_FAIL; in main()
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H A D | plink_cnv.c | 321 retval = RET_OPEN_FAIL; in cnv_intersect_load() 688 retval = RET_OPEN_FAIL; in cnv_make_map() 838 retval = RET_OPEN_FAIL; in validate_cnv_map() 1042 retval = RET_OPEN_FAIL; in plink_cnv()
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H A D | dbl2txt.c | 9 #define RET_OPEN_FAIL 2 macro 608 retval = RET_OPEN_FAIL; in main()
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H A D | plink_misc.c | 150 retval = RET_OPEN_FAIL; in write_nosex() 633 retval = RET_OPEN_FAIL; in apply_cm_map() 1192 retval = RET_OPEN_FAIL; in update_marker_alleles() 1348 retval = RET_OPEN_FAIL; in flip_strand() 1441 retval = RET_OPEN_FAIL; in update_sample_ids() 1542 retval = RET_OPEN_FAIL; in update_sample_parents() 1657 retval = RET_OPEN_FAIL; in update_sample_sexes() 2178 retval = RET_OPEN_FAIL; in read_external_freqs() 2649 retval = RET_OPEN_FAIL; in write_stratified_freqs() 2833 retval = RET_OPEN_FAIL; in write_cc_freqs() [all …]
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H A D | plink_filter.c | 178 retval = RET_OPEN_FAIL; in keep_or_remove() 412 retval = RET_OPEN_FAIL; in extract_exclude_flag_norange() 1439 retval = RET_OPEN_FAIL; in load_oblig_missing() 1536 retval = RET_OPEN_FAIL; in filter_samples_file() 1757 retval = RET_OPEN_FAIL; in mind_filter() 2476 retval = RET_OPEN_FAIL; in calc_freqs_and_hwe() 2824 retval = RET_OPEN_FAIL; in write_missingness_reports() 3054 retval = RET_OPEN_FAIL; in hardy_report()
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H A D | plink_data.c | 188 retval = RET_OPEN_FAIL; in sample_major_to_snp_major() 375 retval = RET_OPEN_FAIL; in load_map() 1150 retval = RET_OPEN_FAIL; in load_bim() 1670 retval = RET_OPEN_FAIL; in load_covars() 2094 retval = RET_OPEN_FAIL; in write_covars() 2273 retval = RET_OPEN_FAIL; in zero_cluster_init() 2342 retval = RET_OPEN_FAIL; in write_fam() 2408 retval = RET_OPEN_FAIL; in write_map_or_bim() 2459 retval = RET_OPEN_FAIL; in load_bim_split_chrom() 2757 retval = RET_OPEN_FAIL; in sort_and_write_bim() [all …]
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H A D | plink_set.c | 644 retval = RET_OPEN_FAIL; in extract_exclude_range() 1660 retval = RET_OPEN_FAIL; in define_sets() 1879 retval = RET_OPEN_FAIL; in write_set() 2339 retval = RET_OPEN_FAIL; in load_range_list_sortpos() 2387 retval = RET_OPEN_FAIL; in scrape_extra_chroms() 3217 retval = RET_OPEN_FAIL; in annotate() 3699 retval = RET_OPEN_FAIL; in gene_report()
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H A D | plink_cluster.c | 563 retval = RET_OPEN_FAIL; in load_clusters() 689 retval = RET_OPEN_FAIL; in write_clusters() 781 retval = RET_OPEN_FAIL; in extract_clusters() 1272 retval = RET_OPEN_FAIL; in read_dists() 1946 retval = RET_OPEN_FAIL; in cluster_enforce_match() 2905 retval = RET_OPEN_FAIL; in write_cluster_solution() 3202 retval = RET_OPEN_FAIL; in mds_plot() 3511 retval = RET_OPEN_FAIL; in mds_plot_eigendecomp()
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H A D | dose2plink.c | 107 #define RET_OPEN_FAIL 3 macro 1403 retval = RET_OPEN_FAIL; in main()
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H A D | plink_rserve.c | 471 retval = RET_OPEN_FAIL; in rserve_call()
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H A D | plink_lasso.c | 620 retval = RET_OPEN_FAIL; in lasso_lambda() 1258 retval = RET_OPEN_FAIL; in lasso()
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H A D | plink_calc.c | 2663 retval = RET_OPEN_FAIL; in unrelated_herit_batch() 3254 return RET_OPEN_FAIL; in write_ids() 4215 retval = RET_OPEN_FAIL; in distance_d_write() 5040 retval = RET_OPEN_FAIL; in calc_genome() 5951 retval = RET_OPEN_FAIL; in rel_cutoff_batch() 6348 retval = RET_OPEN_FAIL; in load_distance_wts() 6965 retval = RET_OPEN_FAIL; in calc_rel() 7437 retval = RET_OPEN_FAIL; in calc_pca() 8200 retval = RET_OPEN_FAIL; in calc_distance() 9226 retval = RET_OPEN_FAIL; in calc_cluster_neighbor()
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H A D | plink_perm.c | 859 retval = RET_OPEN_FAIL; in make_perm_pheno()
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H A D | plink_ld.c | 742 retval = RET_OPEN_FAIL; in ld_prune_write() 1919 retval = RET_OPEN_FAIL; in flipscan() 2578 retval = RET_OPEN_FAIL; in ld_report_matrix() 6193 retval = RET_OPEN_FAIL; in ld_report_regular() 6746 retval = RET_OPEN_FAIL; in show_tags() 7625 retval = RET_OPEN_FAIL; in haploview_blocks() 8312 retval = RET_OPEN_FAIL; in twolocus() 8847 retval = RET_OPEN_FAIL; in epistasis_linear_regression() 9324 retval = RET_OPEN_FAIL; in epistasis_logistic_regression() 10368 retval = RET_OPEN_FAIL; in epistasis_report() [all …]
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H A D | plink_family.c | 1234 retval = RET_OPEN_FAIL; in mendel_error_scan() 1970 retval = RET_OPEN_FAIL; in tdt_poo() 2520 retval = RET_OPEN_FAIL; in tdt() 4937 retval = RET_OPEN_FAIL; in dfam() 5937 retval = RET_OPEN_FAIL; in qfam() 6334 retval = RET_OPEN_FAIL; in make_pseudocontrols()
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H A D | plink_dosage.c | 461 retval = RET_OPEN_FAIL; in dosage_load_score_files() 2309 retval = RET_OPEN_FAIL; in plink1_dosage()
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H A D | plink_homozyg.c | 652 retval = RET_OPEN_FAIL; in write_main_roh_reports() 2411 retval = RET_OPEN_FAIL; in roh_pool()
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H A D | plink_assoc.c | 567 retval = RET_OPEN_FAIL; in multcomp() 7755 retval = RET_OPEN_FAIL; in model_assoc() 9090 retval = RET_OPEN_FAIL; in qassoc() 9581 retval = RET_OPEN_FAIL; in gxe_assoc() 10744 retval = RET_OPEN_FAIL; in testmiss() 11354 retval = RET_OPEN_FAIL; in cmh_assoc() 11608 retval = RET_OPEN_FAIL; in cmh2_assoc() 11866 retval = RET_OPEN_FAIL; in homog_assoc()
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H A D | plink_glm.c | 277 retval = RET_OPEN_FAIL; in glm_scan_conditions() 5588 retval = RET_OPEN_FAIL; in glm_linear_assoc() 7024 retval = RET_OPEN_FAIL; in glm_logistic_assoc() 7885 retval = RET_OPEN_FAIL; in glm_linear_nosnp() 8669 retval = RET_OPEN_FAIL; in glm_logistic_nosnp()
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H A D | plink_common.c | 236 return RET_OPEN_FAIL; in gzopen_read_checked() 9736 retval = RET_OPEN_FAIL; in open_and_size_string_list() 9780 return RET_OPEN_FAIL; in open_and_skip_first_lines() 9842 return RET_OPEN_FAIL; in open_and_load_to_first_token()
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H A D | plink.c | 2150 retval = RET_OPEN_FAIL; in plink() 2697 retval = RET_OPEN_FAIL; in rerun() 2739 return RET_OPEN_FAIL; in alloc_fname() 2818 return RET_OPEN_FAIL; in alloc_2col() 13527 retval = RET_OPEN_FAIL; in main()
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H A D | plink_common.h | 310 #define RET_OPEN_FAIL 2 macro
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