| /dports/www/firefox/firefox-99.0/third_party/wasm2c/src/ |
| H A D | binary-reader.cc | 945 CHECK_RESULT(ReadAlignment(&alignment_log2, "load alignment")); in ReadFunctionBody()
964 CHECK_RESULT(ReadAlignment(&alignment_log2, "store alignment")); in ReadFunctionBody()
1325 CHECK_RESULT(ReadAlignment(&alignment_log2, "load alignment")); in ReadFunctionBody()
1338 CHECK_RESULT(ReadAlignment(&alignment_log2, "load alignment")); in ReadFunctionBody()
1353 CHECK_RESULT(ReadAlignment(&alignment_log2, "load alignment")); in ReadFunctionBody()
1366 CHECK_RESULT(ReadAlignment(&alignment_log2, "load alignment")); in ReadFunctionBody()
1486 CHECK_RESULT(ReadAlignment(&alignment_log2, "load alignment")); in ReadFunctionBody()
1498 CHECK_RESULT(ReadAlignment(&alignment_log2, "load alignment")); in ReadFunctionBody()
1525 CHECK_RESULT(ReadAlignment(&alignment_log2, "load alignment")); in ReadFunctionBody()
1542 CHECK_RESULT(ReadAlignment(&alignment_log2, "store alignment")); in ReadFunctionBody()
[all …]
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| /dports/biology/tRNAscan-SE/tRNAscan-SE-2.0/src/ |
| H A D | reformat_main.c | 151 ReadAlignment(seqfile, fmt, &aseqs, &num, &ainfo); in main()
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| H A D | sqfuncs.h | 73 extern int ReadAlignment(char *seqfile, int format, char ***ret_aseqs, int *ret_num,
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| H A D | build_main.c | 143 if (! ReadAlignment(seqfile, format, &aseqs, &nseq, &ainfo)) in main()
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| H A D | train_main.c | 189 if (! ReadAlignment(aseqfile, format, &aseqs, &num_aseqs, &ainfo)) in main()
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| H A D | interleaved.c | 486 ReadAlignment(char *seqfile, in ReadAlignment() function
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| H A D | sqio.c | 842 if (! ReadAlignment(filename, format, &ali_aseqs, &ali_num, &ali_ainfo)) in SeqfileOpen()
1520 if (! ReadAlignment(seqfile, fformat, &aseqs, &num, &ainfo)) return 0; in ReadMultipleRseqs()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/table2asn/ |
| H A D | multireader.hpp | 56 CRef<objects::CSeq_entry> ReadAlignment(CNcbiIstream& instream, const CArgs& args);
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| H A D | multireader.cpp | 287 CMultiReader::ReadAlignment(CNcbiIstream& instream, const CArgs& args) in ReadAlignment() function in CMultiReader
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| H A D | table2asn.cpp | 1328 CRef<CSeq_entry> pEntry = m_reader->ReadAlignment(*pIstream, GetArgs()); in ProcessAlignmentFile()
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| /dports/biology/hhsuite/hh-suite-3.3.0/scripts/ |
| H A D | hhmakemodel.pl | 295 &ReadAlignment();
440 &ReadAlignment();
860 sub ReadAlignment() { subroutine
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| /dports/biology/hhsuite/hh-suite-3.3.0/scripts/hhpred/dependencies/ |
| H A D | hhmakemodel.pl | 295 &ReadAlignment();
440 &ReadAlignment();
863 sub ReadAlignment() { subroutine
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| /dports/biology/wise/wise2.4.1/src/HMMer2/ |
| H A D | sqfuncs.h | 92 extern int ReadAlignment(char *seqfile, int format, char ***ret_aseqs, AINFO *ainfo);
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| H A D | interleaved.c | 451 ReadAlignment(char *seqfile, in ReadAlignment() function
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| H A D | sqio.c | 811 if (! ReadAlignment(filename, format, &(dbfp->ali_aseqs), &(dbfp->ali_ainfo))) in SeqfileOpen()
1491 if (! ReadAlignment(seqfile, fformat, &aseqs, &ainfo)) return 0; in ReadMultipleRseqs()
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| H A D | hmmbuild.c | 277 if (! ReadAlignment(seqfile, format, &aseq, &ainfo)) in main()
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| /dports/biology/wise/wise2.4.1/src/models/ |
| H A D | wise2xhmmer2.c | 58 if (! ReadAlignment(seqfile, format, &data, &ainfo)) { in read_SeqAlign_HMMER()
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| H A D | wise2xhmmer2.dy | 76 if (! ReadAlignment(seqfile, format, &data, &ainfo)) {
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| /dports/biology/clustal-omega/clustal-omega-1.2.4/src/squid/ |
| H A D | sqfuncs.h | 109 extern int ReadAlignment(char *seqfile, int format, char ***ret_aseqs, AINFO *ainfo);
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| /dports/biology/ncbi-toolkit/ncbi/sequin/ |
| H A D | sequin.h | 591 extern void ReadAlignment (IteM i);
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| H A D | sequin1.c | 5390 extern void ReadAlignment (IteM i) in ReadAlignment() function
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| /dports/biology/fasttree/FastTree-2.1.10_5/ |
| H A D | FastTree-2.1.10.c | 923 alignment_t *ReadAlignment(/*READ*/FILE *fp, bool bQuote); /* Returns a list of strings (exits on f…
2061 alignment_t *aln = ReadAlignment(fpIn, bQuote); in main()
2137 constraints = ReadAlignment(fpConstraints, bQuote); in main()
3645 alignment_t *ReadAlignment(/*IN*/FILE *fp, bool bQuote) { in ReadAlignment() function
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