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Searched refs:ReferenceSeq (Results 1 – 13 of 13) sorted by relevance

/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/align/
H A Dwriter-reference.h77 typedef struct ReferenceSeq ReferenceSeq; typedef
81 ReferenceSeq const **seq,
126 ALIGN_EXTERN rc_t CC ReferenceSeq_Read(const ReferenceSeq* cself, INSDC_coord_zero offset, INSDC_co…
129 ALIGN_EXTERN rc_t CC ReferenceSeq_Get1stRow(const ReferenceSeq* cself, int64_t* row_id);
131 ALIGN_EXTERN rc_t CC ReferenceSeq_GetID(ReferenceSeq const *self, char const **rslt);
133 ALIGN_EXTERN rc_t CC ReferenceSeq_Compress(const ReferenceSeq* cself,
149 ALIGN_EXTERN rc_t CC ReferenceSeq_TranslateOffset_int(ReferenceSeq const *const cself,
174 ALIGN_EXTERN rc_t CC ReferenceSeq_AddCoverage(const ReferenceSeq* cself, INSDC_coord_zero offset, c…
176 ALIGN_EXTERN rc_t CC ReferenceSeq_Release(const ReferenceSeq* cself);
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/interfaces/align/
H A Dwriter-reference.h77 typedef struct ReferenceSeq ReferenceSeq; typedef
81 ReferenceSeq const **seq,
126 ALIGN_EXTERN rc_t CC ReferenceSeq_Read(const ReferenceSeq* cself, INSDC_coord_zero offset, INSDC_co…
129 ALIGN_EXTERN rc_t CC ReferenceSeq_Get1stRow(const ReferenceSeq* cself, int64_t* row_id);
131 ALIGN_EXTERN rc_t CC ReferenceSeq_GetID(ReferenceSeq const *self, char const **rslt);
133 ALIGN_EXTERN rc_t CC ReferenceSeq_Compress(const ReferenceSeq* cself,
149 ALIGN_EXTERN rc_t CC ReferenceSeq_TranslateOffset_int(ReferenceSeq const *const cself,
174 ALIGN_EXTERN rc_t CC ReferenceSeq_AddCoverage(const ReferenceSeq* cself, INSDC_coord_zero offset, c…
176 ALIGN_EXTERN rc_t CC ReferenceSeq_Release(const ReferenceSeq* cself);
/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/
H A Dwriter-reference.c167 struct ReferenceSeq { struct
476 static ReferenceSeq *newReferenceSeq(ReferenceMgr *const self, ReferenceSeq const *const template) in newReferenceSeq()
608 ReferenceSeq *rs; in ReferenceMgr_ProcessConf()
945 ReferenceSeq new_seq; in ImportFastaFileMany()
1231 ReferenceSeq tmp = *rs; in ReferenceSeq_Attach()
1470 ReferenceSeq *chosen = NULL; in findSeq()
2259 ReferenceSeq *obj; in ReferenceMgr_GetSeq()
2287 ReferenceSeq *rseq; in ReferenceMgr_Verify()
2324 ReferenceSeq *seq; in ReferenceMgr_Get1stRow()
2832 const ReferenceSeq* refseq; in ReferenceMgr_Compress()
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/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/align/
H A Dwriter-reference.c167 struct ReferenceSeq { struct
476 static ReferenceSeq *newReferenceSeq(ReferenceMgr *const self, ReferenceSeq const *const template) in newReferenceSeq()
608 ReferenceSeq *rs; in ReferenceMgr_ProcessConf()
945 ReferenceSeq new_seq; in ImportFastaFileMany()
1231 ReferenceSeq tmp = *rs; in ReferenceSeq_Attach()
1470 ReferenceSeq *chosen = NULL; in findSeq()
2259 ReferenceSeq *obj; in ReferenceMgr_GetSeq()
2287 ReferenceSeq *rseq; in ReferenceMgr_Verify()
2324 ReferenceSeq *seq; in ReferenceMgr_Get1stRow()
2832 const ReferenceSeq* refseq; in ReferenceMgr_Compress()
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/dports/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/
H A Dreference-writer.h39 const ReferenceSeq *rseq;
H A Dreference-writer.c324 ReferenceSeq const *rseq; in ReferenceSetFile()
/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/loader/
H A Dreference-writer.h40 const ReferenceSeq *rseq;
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/interfaces/loader/
H A Dreference-writer.h40 const ReferenceSeq *rseq;
/dports/biology/sra-tools/sra-tools-2.11.0/tools/vcf-loader/
H A Dvcf-database.c101 const ReferenceSeq* seq; in SaveVariants()
/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader/
H A Dreference-writer.c226 ReferenceSeq const *rseq; in ReferenceSetFile()
267 ReferenceSeq const *rseq; in ReferenceGet1stRow()
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/loader/
H A Dreference-writer.c226 ReferenceSeq const *rseq; in ReferenceSetFile()
267 ReferenceSeq const *rseq; in ReferenceGet1stRow()
/dports/biology/sra-tools/sra-tools-2.11.0/test/vcf-loader/
H A Dtest-vcf-loader.cpp732 const ReferenceSeq* seq; in FIXTURE_TEST_CASE()
/dports/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/
H A Dwriter-algn.c564 ReferenceSeq const *rseq; in CGWriterAlgn_Write_int()