Searched refs:ReferenceSeq (Results 1 – 13 of 13) sorted by relevance
/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/align/ |
H A D | writer-reference.h | 77 typedef struct ReferenceSeq ReferenceSeq; typedef 81 ReferenceSeq const **seq, 126 ALIGN_EXTERN rc_t CC ReferenceSeq_Read(const ReferenceSeq* cself, INSDC_coord_zero offset, INSDC_co… 129 ALIGN_EXTERN rc_t CC ReferenceSeq_Get1stRow(const ReferenceSeq* cself, int64_t* row_id); 131 ALIGN_EXTERN rc_t CC ReferenceSeq_GetID(ReferenceSeq const *self, char const **rslt); 133 ALIGN_EXTERN rc_t CC ReferenceSeq_Compress(const ReferenceSeq* cself, 149 ALIGN_EXTERN rc_t CC ReferenceSeq_TranslateOffset_int(ReferenceSeq const *const cself, 174 ALIGN_EXTERN rc_t CC ReferenceSeq_AddCoverage(const ReferenceSeq* cself, INSDC_coord_zero offset, c… 176 ALIGN_EXTERN rc_t CC ReferenceSeq_Release(const ReferenceSeq* cself);
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/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/interfaces/align/ |
H A D | writer-reference.h | 77 typedef struct ReferenceSeq ReferenceSeq; typedef 81 ReferenceSeq const **seq, 126 ALIGN_EXTERN rc_t CC ReferenceSeq_Read(const ReferenceSeq* cself, INSDC_coord_zero offset, INSDC_co… 129 ALIGN_EXTERN rc_t CC ReferenceSeq_Get1stRow(const ReferenceSeq* cself, int64_t* row_id); 131 ALIGN_EXTERN rc_t CC ReferenceSeq_GetID(ReferenceSeq const *self, char const **rslt); 133 ALIGN_EXTERN rc_t CC ReferenceSeq_Compress(const ReferenceSeq* cself, 149 ALIGN_EXTERN rc_t CC ReferenceSeq_TranslateOffset_int(ReferenceSeq const *const cself, 174 ALIGN_EXTERN rc_t CC ReferenceSeq_AddCoverage(const ReferenceSeq* cself, INSDC_coord_zero offset, c… 176 ALIGN_EXTERN rc_t CC ReferenceSeq_Release(const ReferenceSeq* cself);
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/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/ |
H A D | writer-reference.c | 167 struct ReferenceSeq { struct 476 static ReferenceSeq *newReferenceSeq(ReferenceMgr *const self, ReferenceSeq const *const template) in newReferenceSeq() 608 ReferenceSeq *rs; in ReferenceMgr_ProcessConf() 945 ReferenceSeq new_seq; in ImportFastaFileMany() 1231 ReferenceSeq tmp = *rs; in ReferenceSeq_Attach() 1470 ReferenceSeq *chosen = NULL; in findSeq() 2259 ReferenceSeq *obj; in ReferenceMgr_GetSeq() 2287 ReferenceSeq *rseq; in ReferenceMgr_Verify() 2324 ReferenceSeq *seq; in ReferenceMgr_Get1stRow() 2832 const ReferenceSeq* refseq; in ReferenceMgr_Compress() [all …]
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/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/align/ |
H A D | writer-reference.c | 167 struct ReferenceSeq { struct 476 static ReferenceSeq *newReferenceSeq(ReferenceMgr *const self, ReferenceSeq const *const template) in newReferenceSeq() 608 ReferenceSeq *rs; in ReferenceMgr_ProcessConf() 945 ReferenceSeq new_seq; in ImportFastaFileMany() 1231 ReferenceSeq tmp = *rs; in ReferenceSeq_Attach() 1470 ReferenceSeq *chosen = NULL; in findSeq() 2259 ReferenceSeq *obj; in ReferenceMgr_GetSeq() 2287 ReferenceSeq *rseq; in ReferenceMgr_Verify() 2324 ReferenceSeq *seq; in ReferenceMgr_Get1stRow() 2832 const ReferenceSeq* refseq; in ReferenceMgr_Compress() [all …]
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/dports/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/ |
H A D | reference-writer.h | 39 const ReferenceSeq *rseq;
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H A D | reference-writer.c | 324 ReferenceSeq const *rseq; in ReferenceSetFile()
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/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/loader/ |
H A D | reference-writer.h | 40 const ReferenceSeq *rseq;
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/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/interfaces/loader/ |
H A D | reference-writer.h | 40 const ReferenceSeq *rseq;
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/dports/biology/sra-tools/sra-tools-2.11.0/tools/vcf-loader/ |
H A D | vcf-database.c | 101 const ReferenceSeq* seq; in SaveVariants()
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/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader/ |
H A D | reference-writer.c | 226 ReferenceSeq const *rseq; in ReferenceSetFile() 267 ReferenceSeq const *rseq; in ReferenceGet1stRow()
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/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/loader/ |
H A D | reference-writer.c | 226 ReferenceSeq const *rseq; in ReferenceSetFile() 267 ReferenceSeq const *rseq; in ReferenceGet1stRow()
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/dports/biology/sra-tools/sra-tools-2.11.0/test/vcf-loader/ |
H A D | test-vcf-loader.cpp | 732 const ReferenceSeq* seq; in FIXTURE_TEST_CASE()
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/dports/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/ |
H A D | writer-algn.c | 564 ReferenceSeq const *rseq; in CGWriterAlgn_Write_int()
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