| /dports/biology/hhsuite/hh-suite-3.3.0/src/ |
| H A D | hhposteriordecoderrunner.cpp | 34 const float S73[NDSSP][NSSPRED][MAXCF], const float S33[NSSPRED][MAXCF][NSSPRED][MAXCF], in PosteriorDecoderRunner()
38 m_n_threads(n_threads), S73(S73), S33(S33), S37(S37) {} in PosteriorDecoderRunner()
67 …r *> *threads = initializeConsumerThreads(par.loc, target_max_length, q.L, par.ssw, S73, S33, S37); in executeComputation()
127 … const float ssw, const float S73[NDSSP][NSSPRED][MAXCF], in initializeConsumerThreads()
132 …PosteriorDecoder *thread = new PosteriorDecoder(max_target_size, loc, query_size, ssw, S73, S33, S… in initializeConsumerThreads()
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| H A D | hhposteriordecoderrunner.h | 18 const int n_threadsconst, float ssw, const float S73[NDSSP][NSSPRED][MAXCF],
29 const float (*S73)[NSSPRED][MAXCF];
42 const float ssw, const float S73[NDSSP][NSSPRED][MAXCF],
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| H A D | hhviterbirunner.h | 24 …HMMSimd* t_hmm_simd, ViterbiMatrix* pviterbiMatrix, const int ssm_mode, const float S73[NDSSP][NSS… in ViterbiConsumerThread()
33 par.corr, par.min_overlap, par.shift, ssm_mode, par.ssw, S73, S33, S37); in ViterbiConsumerThread()
57 …const int ssm_mode, const float S73[NDSSP][NSSPRED][MAXCF], const float S33[NSSPRED][MAXCF][NSSPRE…
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| H A D | hhviterbi.cpp | 15 const float S73[NDSSP][NSSPRED][MAXCF], const float S33[NSSPRED][MAXCF][NSSPRED][MAXCF], in Viterbi()
17 : S73(S73), S33(S33), S37(S37) in Viterbi()
228 … S_ss[step] = ScoreSS(q,t,i_steps[step],j_steps[step], ssw, ss_hmm_mode, S73, S37, S33); in ScoreForBacktrace()
312 ScoreSS(q,t,i_steps[step],j_steps[step],ssw,ssm,S73,S37,S33)); in PrintDebug()
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| H A D | hhviterbi.h | 55 float shift, const int ss_mode, float ssw, const float S73[NDSSP][NSSPRED][MAXCF],
195 const float S73[NDSSP][NSSPRED][MAXCF], in ScoreSS()
206 return ssw * S73[ (int)q->ss_dssp[i]][ (int)t->ss_pred[j]][ (int)t->ss_conf[j]]; in ScoreSS()
304 const float (*S73)[NSSPRED][MAXCF]; variable
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| H A D | hhposteriordecoder.h | 59 const float S73[NDSSP][NSSPRED][MAXCF], const float S33[NSSPRED][MAXCF][NSSPRED][MAXCF],
90 const float (*S73)[NSSPRED][MAXCF]; variable
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| H A D | hhmatrices.cpp | 148 void SetSecStrucSubstitutionMatrix(const float ssa, float S73[NDSSP][NSSPRED][MAXCF], in SetSecStrucSubstitutionMatrix()
166 S73[A][B][cf] = log2(P73[A][B][cf]); in SetSecStrucSubstitutionMatrix()
173 S37[B][cf][A] = S73[A][B][cf]; in SetSecStrucSubstitutionMatrix()
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| H A D | hhmatrices.h | 272 void SetSecStrucSubstitutionMatrix(const float ssa, float S73[NDSSP][NSSPRED][MAXCF], float S37[NSS…
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| H A D | hhposteriordecoder.cpp | 42 const float S73[NDSSP][NSSPRED][MAXCF], const float S33[NSSPRED][MAXCF][NSSPRED][MAXCF], in PosteriorDecoder()
47 S73(S73), S33(S33), S37(S37) in PosteriorDecoder()
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| H A D | hhforwardalgorithm.cpp | 77 * fpow2(Viterbi::ScoreSS(&q, &t, 1, j, ssw, hit.ssm2, S73, S37, S33)) in forwardAlgorithm()
100 * fpow2(Viterbi::ScoreSS(&q, &t, i, j, ssw, hit.ssm2, S73, S37, S33)) in forwardAlgorithm()
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| H A D | hhblits.h | 123 float S73[NDSSP][NSSPRED][MAXCF]; variable
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| H A D | hhviterbirunner.cpp | 78 const float S73[NDSSP][NSSPRED][MAXCF], const float S33[NSSPRED][MAXCF][NSSPRED][MAXCF], in alignment()
93 …d(thread_id, par, q_simd, t_hmm_simd[thread_id],viterbiMatrix[thread_id], ssm_mode, S73, S33, S37); in alignment()
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| /dports/math/cloog/cloog-cloog-0.20.0/test/ |
| H A D | swim.c | 99 S73(p1);
219 S73(p1);
305 S73(p1);
381 S73(p1);
438 S73(p1);
495 S73(p1);
555 S73(p1);
631 S73(p1);
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| H A D | swim.good.c | 82 #define S73(i) { hash(73); hash(i); } macro
246 S73(p1) ; in test()
366 S73(p1) ; in test()
452 S73(p1) ; in test()
528 S73(p1) ; in test()
585 S73(p1) ; in test()
642 S73(p1) ; in test()
702 S73(p1) ; in test()
778 S73(p1) ; in test()
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| /dports/science/octopus/octopus-10.5/external_libs/spglib-1.9.9/python/test/data/orthorhombic/ |
| H A D | POSCAR-016 | 188 0.8810000000000002 0.1269999999999999 0.9579999999999999 # S73
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| /dports/science/spglib/spglib-1.16.2/python/test/data/orthorhombic/ |
| H A D | POSCAR-016 | 188 0.8810000000000002 0.1269999999999999 0.9579999999999999 # S73
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| /dports/science/py-spglib/spglib-1.16.2/python/test/data/orthorhombic/ |
| H A D | POSCAR-016 | 188 0.8810000000000002 0.1269999999999999 0.9579999999999999 # S73
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| /dports/biology/clustal-omega/clustal-omega-1.2.4/src/hhalign/ |
| H A D | hhdecl-C.h | 240 float S73[NDSSP][NSSPRED][MAXCF]; // P[A][B][cf] = log2 P(A,B,cf)/P(A)/P(B,cf) variable
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| /dports/biology/molden/molden5.8/plush/ |
| H A D | SVR | 78 lab="S73" NH="0"
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| /dports/science/openbabel/openbabel-3.1.1/test/pdb_ligands_sdf/rdkit_addh/ |
| H A D | 5jwm_6on.sdf | 443 S73
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| H A D | 4yv5_svr.sdf | 417 S73
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| H A D | 4x3u_svr.sdf | 417 S73
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| H A D | 3gan_svr.sdf | 417 S73
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| H A D | 3pp7_svr.sdf | 417 S73
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| H A D | 1y4l_svr.sdf | 417 S73
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