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Searched refs:SATupleAndPos (Results 1 – 3 of 3) sorted by relevance

/dports/biology/bowtie2/bowtie2-2.4.4/
H A Daligner_sw_driver.h156 struct SATupleAndPos { struct
164 bool operator<(const SATupleAndPos& o) const { argument
170 bool operator==(const SATupleAndPos& o) const {
192 const EList<SATupleAndPos, 16>& salist, in init() argument
495 EList<SATupleAndPos, 16> satpos_; // holds SATuple, SeedPos pairs
496 EList<SATupleAndPos, 16> satpos2_; // holds SATuple, SeedPos pairs
H A Daligner_sw_driver.cpp519 EList<SATupleAndPos, 16>& satpos = keepWhole ? satpos_ : satpos2_; in prioritizeSATups()
/dports/biology/hisat2/hisat2-2.2.1/
H A Daligner_sw_driver.h166 struct SATupleAndPos { struct
174 bool operator<(const SATupleAndPos& o) const { argument
180 bool operator==(const SATupleAndPos& o) const {
203 const EList<SATupleAndPos<index_t>, 16>& salist, in init()
507 EList<SATupleAndPos<index_t>, 16> satpos_; // holds SATuple, SeedPos pairs
508 EList<SATupleAndPos<index_t>, 16> satpos2_; // holds SATuple, SeedPos pairs
1042 EList<SATupleAndPos<index_t>, 16>& satpos = keepWhole ? satpos_ : satpos2_; in prioritizeSATups()