| /dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/src/sbml/validator/constraints/ |
| H A D | DuplicateTopLevelAnnotation.cpp | 91 checkAnnotation(static_cast <const SBase &> in check_()
101 checkAnnotation(static_cast <const SBase &> in check_()
118 checkAnnotation(static_cast <const SBase &> in check_()
128 checkAnnotation(static_cast <const SBase &> in check_()
138 checkAnnotation(static_cast <const SBase &> in check_()
148 checkAnnotation(static_cast <const SBase &> in check_()
158 checkAnnotation(static_cast <const SBase &> in check_()
168 checkAnnotation(static_cast <const SBase &> in check_()
178 checkAnnotation(static_cast <const SBase &> in check_()
188 checkAnnotation(static_cast <const SBase &> in check_()
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| /dports/biology/libsbml/libsbml-5.19.0/src/sbml/validator/constraints/ |
| H A D | DuplicateTopLevelAnnotation.cpp | 91 checkAnnotation(static_cast <const SBase &> in check_()
101 checkAnnotation(static_cast <const SBase &> in check_()
118 checkAnnotation(static_cast <const SBase &> in check_()
128 checkAnnotation(static_cast <const SBase &> in check_()
138 checkAnnotation(static_cast <const SBase &> in check_()
148 checkAnnotation(static_cast <const SBase &> in check_()
158 checkAnnotation(static_cast <const SBase &> in check_()
168 checkAnnotation(static_cast <const SBase &> in check_()
178 checkAnnotation(static_cast <const SBase &> in check_()
188 checkAnnotation(static_cast <const SBase &> in check_()
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| /dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/src/sbml/ |
| H A D | SBMLVisitor.cpp | 61 visit( static_cast<const SBase&>(x) ); in visit()
68 visit( static_cast<const SBase&>(x) ); in visit()
75 visit( static_cast<const SBase&>(x) ); in visit()
82 visit( static_cast<const SBase&>(x) ); in visit()
89 visit( static_cast<const SBase&>(x) ); in visit()
94 SBMLVisitor::visit (const SBase&) in visit() argument
103 return visit( static_cast<const SBase&>(x) ); in visit()
110 return visit( static_cast<const SBase&>(x) ); in visit()
117 return visit( static_cast<const SBase&>(x) ); in visit()
222 return visit(static_cast<const SBase&>(x)); in visit()
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| H A D | ListOf.cpp | 75 : SBase(sbmlns) in ListOf()
104 struct Clone : public unary_function<SBase*, SBase*>
106 SBase* operator() (SBase* sb) { return sb->clone(); } in operator ()()
257 const SBase*
267 SBase*
274 SBase*
292 SBase*
402 SBase*
496 SBase* mSb;
816 SBase *
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| H A D | SBase.cpp | 102 SBase*
112 SBase* thus = const_cast<SBase*>(this); in getElementBySId()
117 SBase*
127 SBase* thus = const_cast<SBase*>(this); in getElementByMetaId()
184 SBase*
198 SBase*
360 SBase::SBase (SBMLNamespaces *sbmlns) : in SBase() function in SBase
414 SBase::SBase(const SBase& orig) in SBase() function in SBase
481 SBase::~SBase () in ~SBase()
506 SBase& SBase::operator=(const SBase& rhs) in operator =()
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| H A D | ListOf.h | 121 bool operator() (SBase* sb) in operator()
128 class LIBSBML_EXTERN ListOf : public SBase
227 int append (const SBase* item);
248 int appendAndOwn (SBase* disownedItem);
285 int insert (int location, const SBase* item);
318 virtual const SBase* get (unsigned int n) const;
331 virtual SBase* get (unsigned int n);
404 virtual SBase* get (const std::string& sid);
453 virtual SBase* remove (unsigned int n);
469 virtual SBase* remove (const std::string& sid);
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| H A D | Priority.cpp | 68 SBase ( level, version ) in Priority()
78 SBase ( sbmlns ) in Priority()
104 SBase ( orig ) in Priority()
123 this->SBase::operator =(rhs); in operator =()
271 SBase* parent = getParentSBMLObject(); in removeFromParentAndDelete()
281 SBase::renameSIdRefs(oldid, newid); in renameSIdRefs()
290 SBase::renameUnitSIdRefs(oldid, newid); in renameUnitSIdRefs()
609 if ( SBase::readOtherXML(stream) ) in readOtherXML()
685 SBase::writeAttributes(stream); in writeAttributes()
717 SBase::writeElements(stream); in writeElements()
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| H A D | CompartmentType.cpp | 62 SBase ( level, version ) in CompartmentType()
70 SBase ( sbmlns ) in CompartmentType()
105 this->SBase::operator =(rhs); in operator =()
293 SBase::writeElements(stream); in writeElements()
297 SBase::writeExtensionElements(stream); in writeElements()
663 SBase::writeAttributes(stream); in writeAttributes()
771 bool operator() (SBase* sb) in operator ()()
809 SBase* item = NULL; in remove()
810 vector<SBase*>::iterator result; in remove()
842 SBase*
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| H A D | SpeciesType.cpp | 62 SBase ( level, version ) in SpeciesType()
70 SBase ( sbmlns ) in SpeciesType()
93 : SBase ( orig ) in SpeciesType()
105 this->SBase::operator =(rhs); in operator =()
293 SBase::writeElements(stream); in writeElements()
659 SBase::writeAttributes(stream); in writeAttributes()
767 bool operator() (SBase* sb) in operator ()()
805 SBase* item = NULL; in remove()
806 vector<SBase*>::iterator result; in remove()
838 SBase*
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| H A D | Delay.cpp | 68 SBase ( level, version ) in Delay()
78 SBase ( sbmlns ) in Delay()
104 : SBase ( orig ) in Delay()
125 this->SBase::operator =(rhs); in operator =()
411 SBase* parent = getParentSBMLObject(); in removeFromParentAndDelete()
422 SBase::renameSIdRefs(oldid, newid); in renameSIdRefs()
431 SBase::renameUnitSIdRefs(oldid, newid); in renameUnitSIdRefs()
749 if ( SBase::readOtherXML(stream) ) in readOtherXML()
838 SBase::writeAttributes(stream); in writeAttributes()
870 SBase::writeElements(stream); in writeElements()
[all …]
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| /dports/biology/libsbml/libsbml-5.19.0/src/sbml/ |
| H A D | SBMLVisitor.cpp | 61 visit( static_cast<const SBase&>(x) ); in visit()
68 visit( static_cast<const SBase&>(x) ); in visit()
75 visit( static_cast<const SBase&>(x) ); in visit()
82 visit( static_cast<const SBase&>(x) ); in visit()
89 visit( static_cast<const SBase&>(x) ); in visit()
94 SBMLVisitor::visit (const SBase&) in visit() argument
103 return visit( static_cast<const SBase&>(x) ); in visit()
110 return visit( static_cast<const SBase&>(x) ); in visit()
117 return visit( static_cast<const SBase&>(x) ); in visit()
222 return visit(static_cast<const SBase&>(x)); in visit()
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| H A D | ListOf.cpp | 75 : SBase(sbmlns) in ListOf()
104 struct Clone : public unary_function<SBase*, SBase*>
106 SBase* operator() (SBase* sb) { return sb->clone(); } in operator ()()
257 const SBase*
267 SBase*
274 SBase*
292 SBase*
402 SBase*
496 SBase* mSb;
816 SBase *
[all …]
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| H A D | SBase.cpp | 102 SBase*
112 SBase* thus = const_cast<SBase*>(this); in getElementBySId()
117 SBase*
127 SBase* thus = const_cast<SBase*>(this); in getElementByMetaId()
184 SBase*
198 SBase*
360 SBase::SBase (SBMLNamespaces *sbmlns) : in SBase() function in SBase
414 SBase::SBase(const SBase& orig) in SBase() function in SBase
481 SBase::~SBase () in ~SBase()
506 SBase& SBase::operator=(const SBase& rhs) in operator =()
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| H A D | ListOf.h | 121 bool operator() (SBase* sb) in operator()
128 class LIBSBML_EXTERN ListOf : public SBase
227 int append (const SBase* item);
248 int appendAndOwn (SBase* disownedItem);
285 int insert (int location, const SBase* item);
318 virtual const SBase* get (unsigned int n) const;
331 virtual SBase* get (unsigned int n);
404 virtual SBase* get (const std::string& sid);
453 virtual SBase* remove (unsigned int n);
469 virtual SBase* remove (const std::string& sid);
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| H A D | Priority.cpp | 68 SBase ( level, version ) in Priority()
78 SBase ( sbmlns ) in Priority()
104 SBase ( orig ) in Priority()
123 this->SBase::operator =(rhs); in operator =()
271 SBase* parent = getParentSBMLObject(); in removeFromParentAndDelete()
281 SBase::renameSIdRefs(oldid, newid); in renameSIdRefs()
290 SBase::renameUnitSIdRefs(oldid, newid); in renameUnitSIdRefs()
609 if ( SBase::readOtherXML(stream) ) in readOtherXML()
685 SBase::writeAttributes(stream); in writeAttributes()
717 SBase::writeElements(stream); in writeElements()
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| H A D | CompartmentType.cpp | 62 SBase ( level, version ) in CompartmentType()
70 SBase ( sbmlns ) in CompartmentType()
105 this->SBase::operator =(rhs); in operator =()
293 SBase::writeElements(stream); in writeElements()
297 SBase::writeExtensionElements(stream); in writeElements()
663 SBase::writeAttributes(stream); in writeAttributes()
771 bool operator() (SBase* sb) in operator ()()
809 SBase* item = NULL; in remove()
810 vector<SBase*>::iterator result; in remove()
842 SBase*
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| H A D | SpeciesType.cpp | 62 SBase ( level, version ) in SpeciesType()
70 SBase ( sbmlns ) in SpeciesType()
93 : SBase ( orig ) in SpeciesType()
105 this->SBase::operator =(rhs); in operator =()
293 SBase::writeElements(stream); in writeElements()
659 SBase::writeAttributes(stream); in writeAttributes()
767 bool operator() (SBase* sb) in operator ()()
805 SBase* item = NULL; in remove()
806 vector<SBase*>::iterator result; in remove()
838 SBase*
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| H A D | Delay.cpp | 68 SBase ( level, version ) in Delay()
78 SBase ( sbmlns ) in Delay()
104 : SBase ( orig ) in Delay()
125 this->SBase::operator =(rhs); in operator =()
411 SBase* parent = getParentSBMLObject(); in removeFromParentAndDelete()
422 SBase::renameSIdRefs(oldid, newid); in renameSIdRefs()
431 SBase::renameUnitSIdRefs(oldid, newid); in renameUnitSIdRefs()
749 if ( SBase::readOtherXML(stream) ) in readOtherXML()
838 SBase::writeAttributes(stream); in writeAttributes()
870 SBase::writeElements(stream); in writeElements()
[all …]
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| /dports/biology/libsbml/libsbml-5.19.0/src/bindings/csharp/csharp-files-win/ |
| H A D | ListOf.cs | 107 public class ListOf : SBase {
354 int append(SBase item) { in append()
382 int appendAndOwn(SBase disownedItem) { in appendAndOwn()
433 int insert(int location, SBase item) { in insert()
476 SBase get(long n) { in get()
477 SBase ret = (SBase) libsbml.DowncastSBase(libsbmlPINVOKE.ListOf_get__SWIG_0(swigCPtr, n), false); in get()
494 SBase getElementBySId(string id) { in getElementBySId()
495 …SBase ret = (SBase) libsbml.DowncastSBase(libsbmlPINVOKE.ListOf_getElementBySId(swigCPtr, id), fal… in getElementBySId()
510 …SBase ret = (SBase) libsbml.DowncastSBase(libsbmlPINVOKE.ListOf_getElementByMetaId(swigCPtr, metai… in getElementByMetaId()
589 SBase remove(long n) { in remove()
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| /dports/biology/libsbml/libsbml-5.19.0/src/bindings/csharp/csharp-files/ |
| H A D | ListOf.cs | 110 public class ListOf : SBase {
357 int append(SBase item) { in append()
385 int appendAndOwn(SBase disownedItem) { in appendAndOwn()
436 int insert(int location, SBase item) { in insert()
479 SBase get(long n) { in get()
480 SBase ret = (SBase) libsbml.DowncastSBase(libsbmlPINVOKE.ListOf_get__SWIG_0(swigCPtr, n), false); in get()
497 SBase getElementBySId(string id) { in getElementBySId()
498 …SBase ret = (SBase) libsbml.DowncastSBase(libsbmlPINVOKE.ListOf_getElementBySId(swigCPtr, id), fal… in getElementBySId()
514 …SBase ret = (SBase) libsbml.DowncastSBase(libsbmlPINVOKE.ListOf_getElementByMetaId(swigCPtr, metai… in getElementByMetaId()
594 SBase remove(long n) { in remove()
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| /dports/math/libmesh/libmesh-1.6.2/contrib/tecplot/tecio/tecsrc/ |
| H A D | strutil.cpp | 602 REQUIRE(VALID_REF(SBase)); in InternalResetString()
603 REQUIRE(*SBase == NULL || VALID_REF(*SBase)); in InternalResetString()
610 if (*SBase) in InternalResetString()
622 *SBase = NULL; in InternalResetString()
644 if (*SBase) in InternalResetString()
703 if (*SBase == NULL) in TackOnString()
727 if (*SBase) in TackOnString()
730 FREE_ARRAY(*SBase, (CurLen > 0 ? *SBase : "previous text")); in TackOnString()
790 if (*SBase == NULL) in TackOnConstString()
809 if (*SBase) in TackOnConstString()
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| /dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/src/sbml/packages/arrays/util/ |
| H A D | ArraysFlatteningConverter.h | 65 VariableFilter(const SBase* parent);
69 void setParentType(const SBase* parent);
71 virtual bool filter(const SBase* element);
85 virtual bool filter(const SBase* element) in filter()
114 virtual bool filter(const SBase* element) in filter()
252 bool expandNonDimensionedVariable(SBase* element);
254 bool dealWithMathChild(SBase* element);
256 bool dealWithChildObjects(SBase* parent, SBase* element, const Index* index);
262 bool adjustMath(SBase* newElement, const Index* index);
264 bool adjustIdentifiers(SBase* newElement);
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| /dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/src/sbml/packages/qual/sbml/ |
| H A D | DefaultTerm.cpp | 59 : SBase(level, version) in DefaultTerm()
72 : SBase(qualns) in DefaultTerm()
88 : SBase(orig) in DefaultTerm()
103 SBase::operator=(rhs); in operator =()
224 SBase::writeElements(stream); in writeElements()
226 SBase::writeExtensionElements(stream); in writeElements()
247 SBase::setSBMLDocument(d); in setSBMLDocument()
486 int value = SBase::unsetAttribute(attributeName); in unsetAttribute()
508 SBase::addExpectedAttributes(attributes); in addExpectedAttributes()
606 SBase::writeAttributes(stream); in writeAttributes()
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| /dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/src/sbml/packages/spatial/sbml/ |
| H A D | SpatialSymbolReference.cpp | 65 : SBase(level, version) in SpatialSymbolReference()
78 : SBase(spatialns) in SpatialSymbolReference()
91 : SBase( orig ) in SpatialSymbolReference()
105 SBase::operator=(rhs); in operator =()
253 SBase::writeElements(stream); in writeElements()
255 SBase::writeExtensionElements(stream); in writeElements()
285 SBase::setSBMLDocument(d); in setSBMLDocument()
547 int value = SBase::unsetAttribute(attributeName); in unsetAttribute()
569 SBase::addExpectedAttributes(attributes); in addExpectedAttributes()
672 SBase::writeAttributes(stream); in writeAttributes()
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| /dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/src/sbml/packages/comp/validator/constraints/ |
| H A D | PackageIdReplacementCheck.cpp | 55 virtual bool filter(const SBase* element) in filter()
89 virtual bool filter(const SBase* element) in filter()
149 SBase* sb = static_cast<SBase*>(*iter); in check_()
166 SBase* sb = static_cast<SBase*>(*iter); in check_()
182 SBase* refElem = repBy.getReferencedElement(); in checkReferencedElement()
194 SBase * parent = repBy.getParentSBMLObject(); in checkReferencedElement()
216 SBase* refElem = repE.getReferencedElement(); in checkReferencedElement()
228 SBase * parent = repE.getParentSBMLObject()->getParentSBMLObject(); in checkReferencedElement()
241 SBase* refElem, SBase* parent) in logMissingIdAttribute()
259 SBase* refElem, SBase*) in logMissingIdAttribute() argument
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