| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/misc/ |
| H A D | test_misc_bit_twiddling.h | 44 SEQAN_DEFINE_TEST(test_misc_bit_twiddling_pop_count_char) in SEQAN_DEFINE_TEST() function
65 SEQAN_DEFINE_TEST(test_misc_bit_twiddling_pop_count_short) in SEQAN_DEFINE_TEST() function
86 SEQAN_DEFINE_TEST(test_misc_bit_twiddling_pop_count_int) in SEQAN_DEFINE_TEST() function
107 SEQAN_DEFINE_TEST(test_misc_bit_twiddling_pop_count_long) in SEQAN_DEFINE_TEST() function
149 SEQAN_DEFINE_TEST(test_misc_bit_twiddling_pop_count_int8) in SEQAN_DEFINE_TEST() function
156 SEQAN_DEFINE_TEST(test_misc_bit_twiddling_pop_count_uint8) in SEQAN_DEFINE_TEST() function
163 SEQAN_DEFINE_TEST(test_misc_bit_twiddling_pop_count_int16) in SEQAN_DEFINE_TEST() function
170 SEQAN_DEFINE_TEST(test_misc_bit_twiddling_pop_count_uint16) in SEQAN_DEFINE_TEST() function
177 SEQAN_DEFINE_TEST(test_misc_bit_twiddling_pop_count_int32) in SEQAN_DEFINE_TEST() function
184 SEQAN_DEFINE_TEST(test_misc_bit_twiddling_pop_count_uint32) in SEQAN_DEFINE_TEST() function
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| H A D | test_misc_accumulators.h | 44 SEQAN_DEFINE_TEST(test_misc_accumulators_average_accumulator_int_average) in SEQAN_DEFINE_TEST() function
59 SEQAN_DEFINE_TEST(test_misc_accumulators_average_accumulator_int_count) in SEQAN_DEFINE_TEST() function
74 SEQAN_DEFINE_TEST(test_misc_accumulators_average_accumulator_int_sum) in SEQAN_DEFINE_TEST() function
89 SEQAN_DEFINE_TEST(test_misc_accumulators_average_accumulator_int_clear) in SEQAN_DEFINE_TEST() function
106 SEQAN_DEFINE_TEST(test_misc_accumulators_average_accumulator_double_average) in SEQAN_DEFINE_TEST() function
121 SEQAN_DEFINE_TEST(test_misc_accumulators_average_accumulator_double_count) in SEQAN_DEFINE_TEST() function
136 SEQAN_DEFINE_TEST(test_misc_accumulators_average_accumulator_double_sum) in SEQAN_DEFINE_TEST() function
151 SEQAN_DEFINE_TEST(test_misc_accumulators_average_accumulator_double_clear) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/bam_io/ |
| H A D | test_bam_sam_conversion.h | 45 SEQAN_DEFINE_TEST(test_assign_tags_bam_to_sam_two_tags) in SEQAN_DEFINE_TEST() function
55 SEQAN_DEFINE_TEST(test_assign_tags_bam_to_sam_type_A) in SEQAN_DEFINE_TEST() function
65 SEQAN_DEFINE_TEST(test_assign_tags_bam_to_sam_type_c) in SEQAN_DEFINE_TEST() function
75 SEQAN_DEFINE_TEST(test_assign_tags_bam_to_sam_type_C) in SEQAN_DEFINE_TEST() function
85 SEQAN_DEFINE_TEST(test_assign_tags_bam_to_sam_type_s) in SEQAN_DEFINE_TEST() function
95 SEQAN_DEFINE_TEST(test_assign_tags_bam_to_sam_type_S) in SEQAN_DEFINE_TEST() function
105 SEQAN_DEFINE_TEST(test_assign_tags_bam_to_sam_type_i) in SEQAN_DEFINE_TEST() function
115 SEQAN_DEFINE_TEST(test_assign_tags_bam_to_sam_type_I) in SEQAN_DEFINE_TEST() function
125 SEQAN_DEFINE_TEST(test_assign_tags_bam_to_sam_type_f) in SEQAN_DEFINE_TEST() function
143 SEQAN_DEFINE_TEST(test_assign_tags_bam_to_sam_type_Z) in SEQAN_DEFINE_TEST() function
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| H A D | test_bam_alignment_record.h | 46 SEQAN_DEFINE_TEST(test_bam_io_bam_alignment_record_class) in SEQAN_DEFINE_TEST() function
59 SEQAN_DEFINE_TEST(test_bam_io_bam_alignment_record_has_flag_multiple) in SEQAN_DEFINE_TEST() function
72 SEQAN_DEFINE_TEST(test_bam_io_bam_alignment_record_has_flag_unmapped) in SEQAN_DEFINE_TEST() function
85 SEQAN_DEFINE_TEST(test_bam_io_bam_alignment_record_has_flag_next_unmapped) in SEQAN_DEFINE_TEST() function
98 SEQAN_DEFINE_TEST(test_bam_io_bam_alignment_record_has_flag_rc) in SEQAN_DEFINE_TEST() function
111 SEQAN_DEFINE_TEST(test_bam_io_bam_alignment_record_has_flag_next_rc) in SEQAN_DEFINE_TEST() function
124 SEQAN_DEFINE_TEST(test_bam_io_bam_alignment_record_has_flag_first) in SEQAN_DEFINE_TEST() function
137 SEQAN_DEFINE_TEST(test_bam_io_bam_alignment_record_has_flag_last) in SEQAN_DEFINE_TEST() function
150 SEQAN_DEFINE_TEST(test_bam_io_bam_alignment_record_has_flag_secondary) in SEQAN_DEFINE_TEST() function
163 SEQAN_DEFINE_TEST(test_bam_io_bam_alignment_record_has_flag_qc_no_pass) in SEQAN_DEFINE_TEST() function
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| H A D | test_bam_tags_dict.h | 43 SEQAN_DEFINE_TEST(test_bam_tags_dict_get_type_size) in SEQAN_DEFINE_TEST() function
57 SEQAN_DEFINE_TEST(test_bam_tags_dict_get_type) in SEQAN_DEFINE_TEST() function
81 SEQAN_DEFINE_TEST(test_bam_tags_dict_length) in SEQAN_DEFINE_TEST() function
182 SEQAN_DEFINE_TEST(test_bam_tags_dict_get_value_type_A) in SEQAN_DEFINE_TEST() function
191 SEQAN_DEFINE_TEST(test_bam_tags_dict_get_value_type_c) in SEQAN_DEFINE_TEST() function
200 SEQAN_DEFINE_TEST(test_bam_tags_dict_get_value_type_C) in SEQAN_DEFINE_TEST() function
209 SEQAN_DEFINE_TEST(test_bam_tags_dict_get_value_type_s) in SEQAN_DEFINE_TEST() function
218 SEQAN_DEFINE_TEST(test_bam_tags_dict_get_value_type_S) in SEQAN_DEFINE_TEST() function
227 SEQAN_DEFINE_TEST(test_bam_tags_dict_get_value_type_i) in SEQAN_DEFINE_TEST() function
407 SEQAN_DEFINE_TEST(test_bam_tags_dict_set_tag_value) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/modifier/ |
| H A D | test_modifier_shortcuts.h | 43 SEQAN_DEFINE_TEST(test_modifer_shortcuts_dna_string_reverse) in SEQAN_DEFINE_TEST() function
53 SEQAN_DEFINE_TEST(test_modifer_shortcuts_dna5_string_reverse) in SEQAN_DEFINE_TEST() function
63 SEQAN_DEFINE_TEST(test_modifer_shortcuts_rna_string_reverse) in SEQAN_DEFINE_TEST() function
73 SEQAN_DEFINE_TEST(test_modifer_shortcuts_rna5_string_reverse) in SEQAN_DEFINE_TEST() function
83 SEQAN_DEFINE_TEST(test_modifer_shortcuts_dna_string_complement) in SEQAN_DEFINE_TEST() function
93 SEQAN_DEFINE_TEST(test_modifer_shortcuts_dna5_string_complement) in SEQAN_DEFINE_TEST() function
103 SEQAN_DEFINE_TEST(test_modifer_shortcuts_rna_string_complement) in SEQAN_DEFINE_TEST() function
113 SEQAN_DEFINE_TEST(test_modifer_shortcuts_rna5_string_complement) in SEQAN_DEFINE_TEST() function
229 SEQAN_DEFINE_TEST(test_modifer_shortcuts_reverse_in_place_string) in SEQAN_DEFINE_TEST() function
262 SEQAN_DEFINE_TEST(test_modifer_shortcuts_to_lower_in_place_string) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/arg_parse/ |
| H A D | test_arg_parse_argument.h | 47 SEQAN_DEFINE_TEST(test_argument_string_type) in SEQAN_DEFINE_TEST() function
53 SEQAN_DEFINE_TEST(test_argument_bool_type) in SEQAN_DEFINE_TEST() function
58 SEQAN_DEFINE_TEST(test_argument_int_type) in SEQAN_DEFINE_TEST() function
64 SEQAN_DEFINE_TEST(test_argument_int64_type) in SEQAN_DEFINE_TEST() function
70 SEQAN_DEFINE_TEST(test_argument_double_type) in SEQAN_DEFINE_TEST() function
76 SEQAN_DEFINE_TEST(test_argument_inputfile_type) in SEQAN_DEFINE_TEST() function
82 SEQAN_DEFINE_TEST(test_argument_outputfile_type) in SEQAN_DEFINE_TEST() function
88 SEQAN_DEFINE_TEST(test_argument_inputprefix_type) in SEQAN_DEFINE_TEST() function
112 SEQAN_DEFINE_TEST(test_argument_label) in SEQAN_DEFINE_TEST() function
118 SEQAN_DEFINE_TEST(test_argument_invalid_cast) in SEQAN_DEFINE_TEST() function
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| H A D | test_arg_parse.h | 161 SEQAN_DEFINE_TEST(test_unset_value) in SEQAN_DEFINE_TEST() function
181 SEQAN_DEFINE_TEST(test_unset_values) in SEQAN_DEFINE_TEST() function
263 SEQAN_DEFINE_TEST(test_int_long_argument) in SEQAN_DEFINE_TEST() function
284 SEQAN_DEFINE_TEST(test_non_int_argument) in SEQAN_DEFINE_TEST() function
498 SEQAN_DEFINE_TEST(test_string_list) in SEQAN_DEFINE_TEST() function
700 SEQAN_DEFINE_TEST(test_input_file_long) in SEQAN_DEFINE_TEST() function
1041 SEQAN_DEFINE_TEST(test_argument_string) in SEQAN_DEFINE_TEST() function
1167 SEQAN_DEFINE_TEST(test_isDouble) in SEQAN_DEFINE_TEST() function
1182 SEQAN_DEFINE_TEST(test_isInt) in SEQAN_DEFINE_TEST() function
1282 SEQAN_DEFINE_TEST(test_boolean_flags) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/basic/ |
| H A D | test_basic_metaprogramming.h | 44 SEQAN_DEFINE_TEST(test_basic_metaprogramming_true) in SEQAN_DEFINE_TEST() function
50 SEQAN_DEFINE_TEST(test_basic_metaprogramming_false) in SEQAN_DEFINE_TEST() function
56 SEQAN_DEFINE_TEST(test_basic_metaprogramming_eval) in SEQAN_DEFINE_TEST() function
64 SEQAN_DEFINE_TEST(test_basic_metaprogramming_or) in SEQAN_DEFINE_TEST() function
76 SEQAN_DEFINE_TEST(test_basic_metaprogramming_and) in SEQAN_DEFINE_TEST() function
88 SEQAN_DEFINE_TEST(test_basic_metaprogramming_is_same_type) in SEQAN_DEFINE_TEST() function
98 SEQAN_DEFINE_TEST(test_basic_metaprogramming_log2) in SEQAN_DEFINE_TEST() function
118 SEQAN_DEFINE_TEST(test_basic_metaprogramming_log2_floor) in SEQAN_DEFINE_TEST() function
138 SEQAN_DEFINE_TEST(test_basic_metaprogramming_power) in SEQAN_DEFINE_TEST() function
156 SEQAN_DEFINE_TEST(test_basic_metaprogramming_make_signed) in SEQAN_DEFINE_TEST() function
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| H A D | test_basic_aggregate.h | 194 SEQAN_DEFINE_TEST(test_basic_aggregates_pair_base_assign) in SEQAN_DEFINE_TEST() function
217 SEQAN_DEFINE_TEST(test_basic_aggregates_pair_base_set) in SEQAN_DEFINE_TEST() function
240 SEQAN_DEFINE_TEST(test_basic_aggregates_pair_base_move) in SEQAN_DEFINE_TEST() function
269 SEQAN_DEFINE_TEST(test_basic_aggregates_pair_base_value) in SEQAN_DEFINE_TEST() function
527 SEQAN_DEFINE_TEST(test_basic_aggregates_pair_packed_set) in SEQAN_DEFINE_TEST() function
539 SEQAN_DEFINE_TEST(test_basic_aggregates_pair_packed_move) in SEQAN_DEFINE_TEST() function
953 SEQAN_DEFINE_TEST(test_basic_aggregates_triple_base_set) in SEQAN_DEFINE_TEST() function
965 SEQAN_DEFINE_TEST(test_basic_aggregates_triple_base_move) in SEQAN_DEFINE_TEST() function
1355 SEQAN_DEFINE_TEST(test_basic_aggregates_tuple_base_set) in SEQAN_DEFINE_TEST() function
1386 SEQAN_DEFINE_TEST(test_basic_aggregates_tuple_base_move) in SEQAN_DEFINE_TEST() function
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| H A D | test_basic_alphabet_adapt_builtins.h | 60 SEQAN_DEFINE_TEST(test_basic_alphabet_adapt_builtins_concepts_bool) in SEQAN_DEFINE_TEST() function
91 SEQAN_DEFINE_TEST(test_basic_alphabet_adapt_builtins_concepts_char) in SEQAN_DEFINE_TEST() function
132 SEQAN_DEFINE_TEST(test_basic_alphabet_adapt_builtins_concepts_short) in SEQAN_DEFINE_TEST() function
165 SEQAN_DEFINE_TEST(test_basic_alphabet_adapt_builtins_concepts_int) in SEQAN_DEFINE_TEST() function
198 SEQAN_DEFINE_TEST(test_basic_alphabet_adapt_builtins_concepts_long) in SEQAN_DEFINE_TEST() function
240 SEQAN_DEFINE_TEST(test_basic_alphabet_adapt_builtins_concepts_int8) in SEQAN_DEFINE_TEST() function
273 SEQAN_DEFINE_TEST(test_basic_alphabet_adapt_builtins_concepts_uint8) in SEQAN_DEFINE_TEST() function
305 SEQAN_DEFINE_TEST(test_basic_alphabet_adapt_builtins_concepts_int16) in SEQAN_DEFINE_TEST() function
370 SEQAN_DEFINE_TEST(test_basic_alphabet_adapt_builtins_concepts_int32) in SEQAN_DEFINE_TEST() function
435 SEQAN_DEFINE_TEST(test_basic_alphabet_adapt_builtins_concepts_int64) in SEQAN_DEFINE_TEST() function
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| H A D | test_basic_tag.h | 47 SEQAN_DEFINE_TEST(test_basic_tag_tag_struct) in SEQAN_DEFINE_TEST() function
53 SEQAN_DEFINE_TEST(test_basic_tag_tag_basic_tags) in SEQAN_DEFINE_TEST() function
63 SEQAN_DEFINE_TEST(test_basic_tag_move) in SEQAN_DEFINE_TEST() function
70 SEQAN_DEFINE_TEST(test_basic_tag_misc_tags1) in SEQAN_DEFINE_TEST() function
79 SEQAN_DEFINE_TEST(test_basic_tag_misc_tags2) in SEQAN_DEFINE_TEST() function
86 SEQAN_DEFINE_TEST(test_basic_tag_tag_list_selector) in SEQAN_DEFINE_TEST() function
96 SEQAN_DEFINE_TEST(test_basic_tag_misc_tags3) in SEQAN_DEFINE_TEST() function
103 SEQAN_DEFINE_TEST(test_basic_tag_misc_tags4) in SEQAN_DEFINE_TEST() function
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| H A D | test_basic_fundamental_metafunctions.h | 41 SEQAN_DEFINE_TEST(test_basic_fundamental_metafunctions_value) in SEQAN_DEFINE_TEST() function
50 SEQAN_DEFINE_TEST(test_basic_fundamental_metafunctions_get_value) in SEQAN_DEFINE_TEST() function
56 SEQAN_DEFINE_TEST(test_basic_fundamental_metafunctions_reference) in SEQAN_DEFINE_TEST() function
62 SEQAN_DEFINE_TEST(test_basic_fundamental_metafunctions_size) in SEQAN_DEFINE_TEST() function
68 SEQAN_DEFINE_TEST(test_basic_fundamental_metafunctions_difference) in SEQAN_DEFINE_TEST() function
74 SEQAN_DEFINE_TEST(test_basic_fundamental_metafunctions_position) in SEQAN_DEFINE_TEST() function
85 SEQAN_DEFINE_TEST(test_basic_fundamental_metafunctions_spec) in SEQAN_DEFINE_TEST() function
103 SEQAN_DEFINE_TEST(test_basic_fundamental_metafunctions_deepest_spec) in SEQAN_DEFINE_TEST() function
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| H A D | test_basic_type.h | 66 SEQAN_DEFINE_TEST(seqan_basic_type_metafunction_value)
156 SEQAN_DEFINE_TEST(seqan_basic_type_metafunction_size)
243 SEQAN_DEFINE_TEST(seqan_basic_type_metafunction_host)
250 SEQAN_DEFINE_TEST(seqan_basic_type_metafunction_spec)
277 SEQAN_DEFINE_TEST(seqan_basic_type_metafunction_cargo)
335 SEQAN_DEFINE_TEST(seqan_basic_type_metafunction_id)
364 SEQAN_DEFINE_TEST(seqan_basic_type_metafunction_key)
393 SEQAN_DEFINE_TEST(seqan_basic_type_metafunction_object)
419 SEQAN_DEFINE_TEST(seqan_basic_type_metafunction_source)
448 SEQAN_DEFINE_TEST(seqan_basic_type_to_parameter)
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/seeds/ |
| H A D | test_seeds_seed_set_base.cpp | 878 SEQAN_DEFINE_TEST(test_seeds_seed_set_base_container_functions_simple_unordered) in SEQAN_DEFINE_TEST() function
888 SEQAN_DEFINE_TEST(test_seeds_seed_set_base_add_seed_single_no_threshold_simple_unordered) in SEQAN_DEFINE_TEST() function
898 SEQAN_DEFINE_TEST(test_seeds_seed_set_base_add_seed_single_threshold_reached_length_simple_unordere… in SEQAN_DEFINE_TEST() function
919 SEQAN_DEFINE_TEST(test_seeds_seed_set_base_add_seed_single_threshold_reached_score_simple_unordered) in SEQAN_DEFINE_TEST() function
930 SEQAN_DEFINE_TEST(test_seeds_seed_set_base_add_seed_single_threshold_not_reached_score_simple_unord… in SEQAN_DEFINE_TEST() function
1169 SEQAN_DEFINE_TEST(test_seeds_seed_set_base_container_functions_chained_unordered) in SEQAN_DEFINE_TEST() function
1180 SEQAN_DEFINE_TEST(test_seeds_seed_set_base_add_seed_single_no_threshold_chained_unordered) in SEQAN_DEFINE_TEST() function
1191 SEQAN_DEFINE_TEST(test_seeds_seed_set_base_add_seed_single_threshold_reached_length_chained_unorder… in SEQAN_DEFINE_TEST() function
1213 SEQAN_DEFINE_TEST(test_seeds_seed_set_base_add_seed_single_threshold_reached_score_chained_unordere… in SEQAN_DEFINE_TEST() function
1474 SEQAN_DEFINE_TEST(test_seeds_seed_set_base_clear_simple) in SEQAN_DEFINE_TEST() function
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| H A D | test_seeds_seed_base.cpp | 120 SEQAN_DEFINE_TEST(test_seeds_seed_base_constructors_simple) in SEQAN_DEFINE_TEST() function
128 SEQAN_DEFINE_TEST(test_seeds_seed_base_metafunctions_simple) in SEQAN_DEFINE_TEST() function
146 SEQAN_DEFINE_TEST(test_seeds_seed_base_getters_setters_simple) in SEQAN_DEFINE_TEST() function
154 SEQAN_DEFINE_TEST(test_seeds_seed_base_basic_functions_simple) in SEQAN_DEFINE_TEST() function
161 SEQAN_DEFINE_TEST(test_seeds_seed_base_assign_simple) in SEQAN_DEFINE_TEST() function
169 SEQAN_DEFINE_TEST(test_seeds_seed_base_constructors_chained) in SEQAN_DEFINE_TEST() function
177 SEQAN_DEFINE_TEST(test_seeds_seed_base_metafunctions_chained) in SEQAN_DEFINE_TEST() function
185 SEQAN_DEFINE_TEST(test_seeds_seed_base_getters_setters_chained) in SEQAN_DEFINE_TEST() function
193 SEQAN_DEFINE_TEST(test_seeds_seed_base_basic_functions_chained) in SEQAN_DEFINE_TEST() function
200 SEQAN_DEFINE_TEST(test_seeds_seed_base_assign_chained) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/consensus/ |
| H A D | test_consensus.h | 196 SEQAN_DEFINE_TEST(test_consensus_value_consensus_score) in SEQAN_DEFINE_TEST() function
202 SEQAN_DEFINE_TEST(test_consensus_value_fractional_score) in SEQAN_DEFINE_TEST() function
214 SEQAN_DEFINE_TEST(test_consensus_position_consensus_score) in SEQAN_DEFINE_TEST() function
220 SEQAN_DEFINE_TEST(test_consensus_position_fractional_score) in SEQAN_DEFINE_TEST() function
232 SEQAN_DEFINE_TEST(test_consensus_host_consensus_score) in SEQAN_DEFINE_TEST() function
238 SEQAN_DEFINE_TEST(test_consensus_host_fractional_score) in SEQAN_DEFINE_TEST() function
244 SEQAN_DEFINE_TEST(test_consensus_host_weightedconsensus_score) in SEQAN_DEFINE_TEST() function
250 SEQAN_DEFINE_TEST(test_consensus_write_celera_cgb) in SEQAN_DEFINE_TEST() function
272 SEQAN_DEFINE_TEST(test_consensus_write_celera_frg) in SEQAN_DEFINE_TEST() function
294 SEQAN_DEFINE_TEST(test_consensus_write_fasta_read_format) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/random/ |
| H A D | test_random_beta.h | 44 SEQAN_DEFINE_TEST(test_random_beta_constructors) in SEQAN_DEFINE_TEST() function
68 SEQAN_DEFINE_TEST(test_random_beta_alpha) in SEQAN_DEFINE_TEST() function
76 SEQAN_DEFINE_TEST(test_random_beta_beta) in SEQAN_DEFINE_TEST() function
84 SEQAN_DEFINE_TEST(test_random_beta_min) in SEQAN_DEFINE_TEST() function
92 SEQAN_DEFINE_TEST(test_random_beta_max) in SEQAN_DEFINE_TEST() function
100 SEQAN_DEFINE_TEST(test_random_beta_param) in SEQAN_DEFINE_TEST() function
109 SEQAN_DEFINE_TEST(test_random_beta_set_param) in SEQAN_DEFINE_TEST() function
122 SEQAN_DEFINE_TEST(test_random_beta_write) in SEQAN_DEFINE_TEST() function
133 SEQAN_DEFINE_TEST(test_random_beta_read) in SEQAN_DEFINE_TEST() function
145 SEQAN_DEFINE_TEST(test_random_beta_functor) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/align/ |
| H A D | test_alignment_dp_matrix.h | 693 SEQAN_DEFINE_TEST(test_alignment_dp_matrix_data_host) in SEQAN_DEFINE_TEST() function
698 SEQAN_DEFINE_TEST(test_alignment_dp_matrix_data_lengths) in SEQAN_DEFINE_TEST() function
703 SEQAN_DEFINE_TEST(test_alignment_dp_matrix_data_factors) in SEQAN_DEFINE_TEST() function
708 SEQAN_DEFINE_TEST(test_alignment_dp_matrix_full_resize) in SEQAN_DEFINE_TEST() function
766 SEQAN_DEFINE_TEST(test_alignment_dp_matrix_full_value) in SEQAN_DEFINE_TEST() function
899 SEQAN_DEFINE_TEST(test_alignment_dp_matrix_full_length) in SEQAN_DEFINE_TEST() function
933 SEQAN_DEFINE_TEST(test_alignment_dp_matrix_full_empty) in SEQAN_DEFINE_TEST() function
943 SEQAN_DEFINE_TEST(test_alignment_dp_matrix_clear) in SEQAN_DEFINE_TEST() function
948 SEQAN_DEFINE_TEST(test_alignment_dp_matrix_host) in SEQAN_DEFINE_TEST() function
953 SEQAN_DEFINE_TEST(test_alignment_dp_matrix_set_host) in SEQAN_DEFINE_TEST() function
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| H A D | test_alignment_dp_cell.h | 250 SEQAN_DEFINE_TEST(test_dp_cell_value) in SEQAN_DEFINE_TEST() function
257 SEQAN_DEFINE_TEST(test_dp_cell_reference) in SEQAN_DEFINE_TEST() function
264 SEQAN_DEFINE_TEST(test_dp_cell_default_infinity) in SEQAN_DEFINE_TEST() function
271 SEQAN_DEFINE_TEST(test_dp_cell_linear_constructor) in SEQAN_DEFINE_TEST() function
281 SEQAN_DEFINE_TEST(test_dp_cell_linear_assignment) in SEQAN_DEFINE_TEST() function
286 SEQAN_DEFINE_TEST(test_dp_cell_linear_score) in SEQAN_DEFINE_TEST() function
291 SEQAN_DEFINE_TEST(test_dp_cell_affine_constructor) in SEQAN_DEFINE_TEST() function
301 SEQAN_DEFINE_TEST(test_dp_cell_affine_assignment) in SEQAN_DEFINE_TEST() function
306 SEQAN_DEFINE_TEST(test_dp_cell_affine_score) in SEQAN_DEFINE_TEST() function
331 SEQAN_DEFINE_TEST(test_dp_cell_dynamic_assignment) in SEQAN_DEFINE_TEST() function
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| H A D | test_alignment_dp_band.h | 60 SEQAN_DEFINE_TEST(test_dp_band_on_constructor) in SEQAN_DEFINE_TEST() function
78 SEQAN_DEFINE_TEST(test_dp_band_on_lower_diagonal) in SEQAN_DEFINE_TEST() function
88 SEQAN_DEFINE_TEST(test_dp_band_on_upper_diagonal) in SEQAN_DEFINE_TEST() function
98 SEQAN_DEFINE_TEST(test_dp_band_on_set_lower_diagonal) in SEQAN_DEFINE_TEST() function
107 SEQAN_DEFINE_TEST(test_dp_band_on_set_upper_diagonal) in SEQAN_DEFINE_TEST() function
116 SEQAN_DEFINE_TEST(test_dp_band_off_band_size) in SEQAN_DEFINE_TEST() function
121 SEQAN_DEFINE_TEST(test_dp_band_on_band_size) in SEQAN_DEFINE_TEST() function
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| H A D | test_align_gaps.h | 1383 SEQAN_DEFINE_TEST(test_align_gaps_array_gaps_metafunctions) in SEQAN_DEFINE_TEST() function
1397 SEQAN_DEFINE_TEST(test_align_gaps_array_gaps_set_source) in SEQAN_DEFINE_TEST() function
1404 SEQAN_DEFINE_TEST(test_align_gaps_array_gaps_assign_source) in SEQAN_DEFINE_TEST() function
1537 SEQAN_DEFINE_TEST(test_align_gaps_array_gaps_clear_clipping) in SEQAN_DEFINE_TEST() function
1544 SEQAN_DEFINE_TEST(test_align_gaps_array_gaps_copy_gaps) in SEQAN_DEFINE_TEST() function
1551 SEQAN_DEFINE_TEST(test_align_gaps_array_gaps_copy_clipping) in SEQAN_DEFINE_TEST() function
1565 SEQAN_DEFINE_TEST(test_align_gaps_array_gaps_clear) in SEQAN_DEFINE_TEST() function
1601 SEQAN_DEFINE_TEST(test_align_gaps_anchor_gaps_metafunctions) in SEQAN_DEFINE_TEST() function
1615 SEQAN_DEFINE_TEST(test_align_gaps_anchor_gaps_set_source) in SEQAN_DEFINE_TEST() function
1762 SEQAN_DEFINE_TEST(test_align_gaps_anchor_gaps_copy_gaps) in SEQAN_DEFINE_TEST() function
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| H A D | test_align_global_alignment_specialized.h | 41 SEQAN_DEFINE_TEST(test_align_global_alignment_hirschberg_single_character) in SEQAN_DEFINE_TEST() function
123 SEQAN_DEFINE_TEST(test_align_global_alignment_hirschberg_align) in SEQAN_DEFINE_TEST() function
153 SEQAN_DEFINE_TEST(test_align_global_alignment_hirschberg_gaps) in SEQAN_DEFINE_TEST() function
181 SEQAN_DEFINE_TEST(test_align_global_alignment_hirschberg_fragments) in SEQAN_DEFINE_TEST() function
186 SEQAN_DEFINE_TEST(test_align_global_alignment_hirschberg_graph) in SEQAN_DEFINE_TEST() function
191 SEQAN_DEFINE_TEST(test_align_global_alignment_myers_hirschberg_align) in SEQAN_DEFINE_TEST() function
219 SEQAN_DEFINE_TEST(test_align_global_alignment_myers_hirschberg_gaps) in SEQAN_DEFINE_TEST() function
250 SEQAN_DEFINE_TEST(test_align_global_alignment_myers_hirschberg_graph) in SEQAN_DEFINE_TEST() function
255 SEQAN_DEFINE_TEST(test_align_global_alignment_score_hirschberg) in SEQAN_DEFINE_TEST() function
278 SEQAN_DEFINE_TEST(test_align_global_alignment_score_myers) in SEQAN_DEFINE_TEST() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/seq_io/ |
| H A D | test_genomic_region.h | 40 SEQAN_DEFINE_TEST(test_seq_io_genomic_region_default_constructed) in SEQAN_DEFINE_TEST() function
50 SEQAN_DEFINE_TEST(test_seq_io_genomic_region_from_string) in SEQAN_DEFINE_TEST() function
60 SEQAN_DEFINE_TEST(test_seq_io_genomic_region_clear) in SEQAN_DEFINE_TEST() function
75 SEQAN_DEFINE_TEST(test_seq_io_genomic_region_parse_chrom) in SEQAN_DEFINE_TEST() function
86 SEQAN_DEFINE_TEST(test_seq_io_genomic_region_parse_chrom_begin) in SEQAN_DEFINE_TEST() function
97 SEQAN_DEFINE_TEST(test_seq_io_genomic_region_parse_chrom_begin_end) in SEQAN_DEFINE_TEST() function
108 SEQAN_DEFINE_TEST(test_seq_io_genomic_region_to_string_interval) in SEQAN_DEFINE_TEST() function
120 SEQAN_DEFINE_TEST(test_seq_io_genomic_region_to_string_point) in SEQAN_DEFINE_TEST() function
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| H A D | test_sequence_file.h | 46 SEQAN_DEFINE_TEST(test_seq_io_sequence_file_recognize_file_type_gz_fasta) in SEQAN_DEFINE_TEST() function
60 SEQAN_DEFINE_TEST(test_seq_io_sequence_file_recognize_file_type_bz2_fasta) in SEQAN_DEFINE_TEST() function
78 SEQAN_DEFINE_TEST(test_seq_io_sequence_file_recognize_file_format_text_fasta) in SEQAN_DEFINE_TEST() function
90 SEQAN_DEFINE_TEST(test_seq_io_sequence_file_recognize_file_format_text_fastq) in SEQAN_DEFINE_TEST() function
134 SEQAN_DEFINE_TEST(test_seq_io_sequence_file_read_record_text_fasta) in SEQAN_DEFINE_TEST() function
142 SEQAN_DEFINE_TEST(test_seq_io_sequence_file_read_all_text_fasta) in SEQAN_DEFINE_TEST() function
170 SEQAN_DEFINE_TEST(test_seq_io_sequence_file_write_record_text_fasta) in SEQAN_DEFINE_TEST() function
197 SEQAN_DEFINE_TEST(test_seq_io_sequence_file_write_all_text_fasta) in SEQAN_DEFINE_TEST() function
279 SEQAN_DEFINE_TEST(test_seq_io_sequence_file_write_all_text_fastq_no_qual) in SEQAN_DEFINE_TEST() function
341 SEQAN_DEFINE_TEST(test_seq_io_sequence_file_isOpen_fileIn) in SEQAN_DEFINE_TEST() function
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