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Searched refs:SamBam_Writer (Results 1 – 6 of 6) sorted by relevance

/dports/biology/subread/subread-2.0.2-source/src/
H A Dsambam-file.h149 } SamBam_Writer; typedef
197 int SamBam_writer_create(SamBam_Writer * writer, char * BAM_fname, int threads, int sort_reads_by_c…
199 int SamBam_writer_close(SamBam_Writer * writer);
201 int SamBam_writer_add_header(SamBam_Writer * writer, char * header_text, int add_chro);
203 int SamBam_writer_add_chromosome(SamBam_Writer * writer, char * chro_name, unsigned int chro_length…
205 int SamBam_writer_add_read_bin(SamBam_Writer * writer, int thread_no, char * rbin, int committable);
211 int SamBam_writer_add_read(SamBam_Writer * writer, int threadno, char * read_name, unsigned int fla…
227 void SamBam_writer_finalise_thread(SamBam_Writer * writer, int thread_id);
228 void SamBam_writer_finish_header( SamBam_Writer * writer );
229 void SamBam_writer_finalise_one_thread(SamBam_Writer * writer);
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H A Dsambam-file.c1100 memset(writer, 0, sizeof(SamBam_Writer)); in SamBam_writer_create()
1194 void SamBam_writer_add_chunk(SamBam_Writer * writer, int thread_no) in SamBam_writer_add_chunk()
1249 void SamBam_writer_write_header(SamBam_Writer * writer) in SamBam_writer_write_header()
1308 void SamBam_writer_finalise_one_thread(SamBam_Writer * writer);
1309 void SamBam_writer_sort_bins_to_BAM(SamBam_Writer * writer);
1311 int SamBam_writer_close(SamBam_Writer * writer) in SamBam_writer_close()
1596 void SamBam_writer_finish_header( SamBam_Writer * writer ){ in SamBam_writer_finish_header()
1985 SamBam_Writer * writer = vptr[0]; in SamBam_writer_sorted_compress()
2292 void SamBam_write_sorted_thread_collect(SamBam_Writer * writer){ in SamBam_write_sorted_thread_collect()
2351 void SamBam_writer_sort_bins_to_BAM(SamBam_Writer * writer){ in SamBam_writer_sort_bins_to_BAM()
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H A Dsubtools.c101 SamBam_Writer out_writer; in main()
H A DremoveDupReads.c161 SamBam_Writer writer; in report_remainder()
H A Dcore.h513 SamBam_Writer * output_bam_writer;
H A Dcore.c4158 context -> output_bam_writer = malloc(sizeof(SamBam_Writer));
4179 context -> output_bam_writer = malloc(sizeof(SamBam_Writer));