Searched refs:Seqpat (Results 1 – 6 of 6) sorted by relevance
/dports/biology/treepuzzle/tree-puzzle-5.2/src/ |
H A D | ppuzzle.h | 235 cmatrix Seqpat, /* cmatrix (Maxspc x Numptrn) */ 248 cmatrix Seqpat, /* cmatrix (Maxspc x Numptrn) */
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H A D | ml2.c | 863 Ctree->ebrnchp[0]->eprob = Seqpat[a]; in make_quartet() 864 Ctree->ebrnchp[1]->eprob = Seqpat[b]; in make_quartet() 865 Ctree->ebrnchp[2]->eprob = Seqpat[c]; in make_quartet() 866 Ctree->ebrnchp[3]->eprob = Seqpat[d]; in make_quartet() 901 Ctree = new_quartet(Numptrn, Seqpat); in quartet_lklhd() 930 Ctree = new_quartet(Numptrn, Seqpat); in quartet_alklhd() 959 Ctree = new_tree(Maxspc, Numptrn, Seqpat); in readusertree() 1069 Ctree = new_quartet(Numptrn, Seqpat); in mlstart() 1107 free_cmatrix(Seqpat); in mlfinish() 1409 Ctree = new_tree(Maxspc, Numptrn, Seqpat); in njtree() [all …]
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H A D | ml1.c | 254 Seqpat = new_cmatrix(Maxspc, Numptrn); 257 condenceseq(Seqchar, ali, Seqpat, Weight, Maxspc, Maxsite, Numptrn); 259 countconstantsites(Seqpat, Weight, Maxspc, Numptrn, &Numconst, &Numconstpat); 1075 sitelkl += fracinv*Freqtpm[(int) Seqpat[0][k]]; 1095 sitelkl += fracinv*Freqtpm[(int) Seqpat[0][k]]; 1126 sitelkl += fracinv*Freqtpm[(int) Seqpat[0][k]]; 1145 sitelkl += fracinv*Freqtpm[(int) Seqpat[0][k]]; 1314 seqchi = Seqpat[i]; 1315 seqchj = Seqpat[j]; 1335 seqchi = Seqpat[i]; [all …]
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H A D | ppuzzle.c | 867 cmatrix Seqpat, /* cmatrix (Maxspc x Numptrn) */ in PP_RecvData() argument 892 MPI_Address(&(Seqpat[0][0]), &(Dtypeaddr[0])); in PP_RecvData() 959 cmatrix Seqpat, /* cmatrix (Maxspc x Numptrn) */ in PP_SendData() argument 987 MPI_Address(&(Seqpat[0][0]), &(Dtypeaddr[0])); in PP_SendData() 2399 Seqpat = new_cmatrix(Maxspc, Numptrn); in slave_main() 2411 PP_RecvData(Seqpat, /* cmatrix */ in slave_main() 2418 Ctree = new_quartet(Numptrn, Seqpat); in slave_main()
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H A D | ml.h | 173 EXTERN cmatrix Seqpat; /* ordered site patterns */ variable
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H A D | puzzle1.c | 5842 PP_SendData(Seqpat, /* cmatrix */ 6317 PP_SendData(Seqpat, /* cmatrix */
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