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Searched refs:Seqpat (Results 1 – 6 of 6) sorted by relevance

/dports/biology/treepuzzle/tree-puzzle-5.2/src/
H A Dppuzzle.h235 cmatrix Seqpat, /* cmatrix (Maxspc x Numptrn) */
248 cmatrix Seqpat, /* cmatrix (Maxspc x Numptrn) */
H A Dml2.c863 Ctree->ebrnchp[0]->eprob = Seqpat[a]; in make_quartet()
864 Ctree->ebrnchp[1]->eprob = Seqpat[b]; in make_quartet()
865 Ctree->ebrnchp[2]->eprob = Seqpat[c]; in make_quartet()
866 Ctree->ebrnchp[3]->eprob = Seqpat[d]; in make_quartet()
901 Ctree = new_quartet(Numptrn, Seqpat); in quartet_lklhd()
930 Ctree = new_quartet(Numptrn, Seqpat); in quartet_alklhd()
959 Ctree = new_tree(Maxspc, Numptrn, Seqpat); in readusertree()
1069 Ctree = new_quartet(Numptrn, Seqpat); in mlstart()
1107 free_cmatrix(Seqpat); in mlfinish()
1409 Ctree = new_tree(Maxspc, Numptrn, Seqpat); in njtree()
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H A Dml1.c254 Seqpat = new_cmatrix(Maxspc, Numptrn);
257 condenceseq(Seqchar, ali, Seqpat, Weight, Maxspc, Maxsite, Numptrn);
259 countconstantsites(Seqpat, Weight, Maxspc, Numptrn, &Numconst, &Numconstpat);
1075 sitelkl += fracinv*Freqtpm[(int) Seqpat[0][k]];
1095 sitelkl += fracinv*Freqtpm[(int) Seqpat[0][k]];
1126 sitelkl += fracinv*Freqtpm[(int) Seqpat[0][k]];
1145 sitelkl += fracinv*Freqtpm[(int) Seqpat[0][k]];
1314 seqchi = Seqpat[i];
1315 seqchj = Seqpat[j];
1335 seqchi = Seqpat[i];
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H A Dppuzzle.c867 cmatrix Seqpat, /* cmatrix (Maxspc x Numptrn) */ in PP_RecvData() argument
892 MPI_Address(&(Seqpat[0][0]), &(Dtypeaddr[0])); in PP_RecvData()
959 cmatrix Seqpat, /* cmatrix (Maxspc x Numptrn) */ in PP_SendData() argument
987 MPI_Address(&(Seqpat[0][0]), &(Dtypeaddr[0])); in PP_SendData()
2399 Seqpat = new_cmatrix(Maxspc, Numptrn); in slave_main()
2411 PP_RecvData(Seqpat, /* cmatrix */ in slave_main()
2418 Ctree = new_quartet(Numptrn, Seqpat); in slave_main()
H A Dml.h173 EXTERN cmatrix Seqpat; /* ordered site patterns */ variable
H A Dpuzzle1.c5842 PP_SendData(Seqpat, /* cmatrix */
6317 PP_SendData(Seqpat, /* cmatrix */