/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/algo/blast/blastinput/ |
H A D | blast_args.hpp | 118 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc); 189 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc); 209 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc); 226 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc); 240 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc); 254 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc); 269 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc); 281 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc); 311 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc); 341 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc); [all …]
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H A D | rpsblast_args.hpp | 46 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc);
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/blast/blastinput/ |
H A D | blast_args.hpp | 118 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc); 189 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc); 209 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc); 226 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc); 240 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc); 254 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc); 269 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc); 281 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc); 311 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc); 341 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc); [all …]
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H A D | rpsblast_args.hpp | 46 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc);
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/blastinput/ |
H A D | magicblast_args.cpp | 53 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc) { in SetArgumentDescriptions() function in CMapperStdCmdLineArgs 55 CStdCmdLineArgs::SetArgumentDescriptions(arg_desc); in SetArgumentDescriptions() 78 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc) { in SetArgumentDescriptions() function in CMapperGenericSearchArgs 149 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc) { in SetArgumentDescriptions() function in CMapperNuclArgs 165 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc) { in SetArgumentDescriptions() function in CMapperLargestIntronSizeArgs 182 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc) {} in SetArgumentDescriptions() function in CMapperRemoteArgs 194 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc) { in SetArgumentDescriptions() function in CMapperProgramDescriptionArgs
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H A D | blast_args.cpp | 93 CTaskCmdLineArgs::SetArgumentDescriptions(CArgDescriptions& arg_desc) in SetArgumentDescriptions() function in CTaskCmdLineArgs 298 CFilteringArgs::SetArgumentDescriptions(CArgDescriptions& arg_desc) in SetArgumentDescriptions() function in CFilteringArgs 496 CRMBlastNArg::SetArgumentDescriptions(CArgDescriptions& arg_desc) in SetArgumentDescriptions() function in CRMBlastNArg 611 CNuclArgs::SetArgumentDescriptions(CArgDescriptions& arg_desc) in SetArgumentDescriptions() function in CNuclArgs 872 CGappedArgs::SetArgumentDescriptions(CArgDescriptions& arg_desc) in SetArgumentDescriptions() function in CGappedArgs 1377 CKBlastpArgs::SetArgumentDescriptions(CArgDescriptions& arg_desc) in SetArgumentDescriptions() function in CKBlastpArgs 1430 CMappingArgs::SetArgumentDescriptions(CArgDescriptions& arg_desc) in SetArgumentDescriptions() function in CMappingArgs 3015 CMTArgs::SetArgumentDescriptions(CArgDescriptions& arg_desc) in SetArgumentDescriptions() function in CMTArgs 3112 CRemoteArgs::SetArgumentDescriptions(CArgDescriptions& arg_desc) in SetArgumentDescriptions() function in CRemoteArgs 3129 CDebugArgs::SetArgumentDescriptions(CArgDescriptions& arg_desc) in SetArgumentDescriptions() function in CDebugArgs [all …]
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H A D | igblastn_args.cpp | 53 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc) { in SetArgumentDescriptions() function in CIgBlastProgramDescriptionArgs
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H A D | igblastp_args.cpp | 54 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc) { in SetArgumentDescriptions() function in CIgBlastProgramDescriptionArgs
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H A D | rpsblast_args.cpp | 45 CRPSBlastMTArgs::SetArgumentDescriptions(CArgDescriptions& arg_desc) in SetArgumentDescriptions() function in CRPSBlastMTArgs
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/blastinput/ |
H A D | magicblast_args.cpp | 53 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc) { in SetArgumentDescriptions() function in CMapperStdCmdLineArgs 55 CStdCmdLineArgs::SetArgumentDescriptions(arg_desc); in SetArgumentDescriptions() 78 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc) { in SetArgumentDescriptions() function in CMapperGenericSearchArgs 149 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc) { in SetArgumentDescriptions() function in CMapperNuclArgs 165 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc) { in SetArgumentDescriptions() function in CMapperLargestIntronSizeArgs 182 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc) {} in SetArgumentDescriptions() function in CMapperRemoteArgs 194 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc) { in SetArgumentDescriptions() function in CMapperProgramDescriptionArgs
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H A D | blast_args.cpp | 93 CTaskCmdLineArgs::SetArgumentDescriptions(CArgDescriptions& arg_desc) in SetArgumentDescriptions() function in CTaskCmdLineArgs 298 CFilteringArgs::SetArgumentDescriptions(CArgDescriptions& arg_desc) in SetArgumentDescriptions() function in CFilteringArgs 496 CRMBlastNArg::SetArgumentDescriptions(CArgDescriptions& arg_desc) in SetArgumentDescriptions() function in CRMBlastNArg 611 CNuclArgs::SetArgumentDescriptions(CArgDescriptions& arg_desc) in SetArgumentDescriptions() function in CNuclArgs 872 CGappedArgs::SetArgumentDescriptions(CArgDescriptions& arg_desc) in SetArgumentDescriptions() function in CGappedArgs 1377 CKBlastpArgs::SetArgumentDescriptions(CArgDescriptions& arg_desc) in SetArgumentDescriptions() function in CKBlastpArgs 1430 CMappingArgs::SetArgumentDescriptions(CArgDescriptions& arg_desc) in SetArgumentDescriptions() function in CMappingArgs 3015 CMTArgs::SetArgumentDescriptions(CArgDescriptions& arg_desc) in SetArgumentDescriptions() function in CMTArgs 3112 CRemoteArgs::SetArgumentDescriptions(CArgDescriptions& arg_desc) in SetArgumentDescriptions() function in CRemoteArgs 3129 CDebugArgs::SetArgumentDescriptions(CArgDescriptions& arg_desc) in SetArgumentDescriptions() function in CDebugArgs [all …]
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H A D | igblastn_args.cpp | 53 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc) { in SetArgumentDescriptions() function in CIgBlastProgramDescriptionArgs
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H A D | igblastp_args.cpp | 54 virtual void SetArgumentDescriptions(CArgDescriptions& arg_desc) { in SetArgumentDescriptions() function in CIgBlastProgramDescriptionArgs
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H A D | rpsblast_args.cpp | 45 CRPSBlastMTArgs::SetArgumentDescriptions(CArgDescriptions& arg_desc) in SetArgumentDescriptions() function in CRPSBlastMTArgs
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/ngalign/ |
H A D | blast_aligner.cpp | 81 search_args.SetArgumentDescriptions(ArgDesc); in s_CreateBlastArgDescriptions() 82 filter_args.SetArgumentDescriptions(ArgDesc); in s_CreateBlastArgDescriptions() 83 nucl_args.SetArgumentDescriptions(ArgDesc); in s_CreateBlastArgDescriptions() 84 gapped_args.SetArgumentDescriptions(ArgDesc); in s_CreateBlastArgDescriptions() 85 cull_args.SetArgumentDescriptions(ArgDesc); in s_CreateBlastArgDescriptions() 86 blastdb_args.SetArgumentDescriptions(ArgDesc); in s_CreateBlastArgDescriptions() 87 window_args.SetArgumentDescriptions(ArgDesc); in s_CreateBlastArgDescriptions() 88 format_args.SetArgumentDescriptions(ArgDesc); in s_CreateBlastArgDescriptions() 89 remote_args.SetArgumentDescriptions(ArgDesc); in s_CreateBlastArgDescriptions()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/app/blast/ |
H A D | blast_report.cpp | 126 fmt_args.SetArgumentDescriptions(*arg_desc); in Init() 138 debug_args.SetArgumentDescriptions(*arg_desc); in Init()
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H A D | blast_formatter.cpp | 132 fmt_args.SetArgumentDescriptions(*arg_desc); in Init() 144 debug_args.SetArgumentDescriptions(*arg_desc); in Init()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/blast/ |
H A D | blast_report.cpp | 126 fmt_args.SetArgumentDescriptions(*arg_desc); in Init() 138 debug_args.SetArgumentDescriptions(*arg_desc); in Init()
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H A D | blast_formatter.cpp | 132 fmt_args.SetArgumentDescriptions(*arg_desc); in Init() 144 debug_args.SetArgumentDescriptions(*arg_desc); in Init()
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