| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/pubseq_gateway/server/ |
| H A D | osg_resolve.cpp | 89 SetSeqId(req.SetSeq_id().SetSeq_id(), psg_req.m_SeqIdType, psg_req.m_SeqId); in CreateRequests()
101 SetSeqId(req.SetSeq_id().SetSeq_id(), psg_req.m_SeqIdType, psg_req.m_SeqId); in CreateRequests()
129 SetSeqId(req.SetSeq_id().SetSeq_id().SetSeq_id(), psg_req.m_SeqIdType, psg_req.m_SeqId); in CreateRequests()
136 SetSeqId(req.SetSeq_id().SetSeq_id(), psg_req.m_SeqIdType, psg_req.m_SeqId); in CreateRequests()
225 …SetSeqId(req.SetRequest().SetSeq_id().SetSeq_id().SetSeq_id(), psg_req.m_SeqIdType, psg_req.m_SeqI… in CreateRequests()
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| H A D | osg_annot.cpp | 146 SetSeqId(req.SetSeq_id().SetSeq_id().SetSeq_id(), psg_req.m_SeqIdType, psg_req.m_SeqId); in CreateRequests()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/data_loaders/genbank/ |
| H A D | reader_id2_base.cpp | 245 get_blob_id.SetSeq_id().SetSeq_id().SetSeq_id().Assign(seq_id); in x_SetResolve()
312 get_id.SetSeq_id().SetSeq_id().Assign(*seq_id.GetSeqId()); in LoadSeq_idSeq_ids()
329 get_id.SetSeq_id().SetSeq_id().Assign(*seq_id.GetSeqId()); in LoadSeq_idGi()
351 get_id.SetSeq_id().SetSeq_id().Assign(*seq_id.GetSeqId()); in LoadSeq_idAccVer()
377 get_id.SetSeq_id().SetSeq_id().Assign(*seq_id.GetSeqId()); in LoadSeq_idLabel()
404 get_id.SetSeq_id().SetSeq_id().Assign(*seq_id.GetSeqId()); in LoadSeq_idTaxId()
431 get_id.SetSeq_id().SetSeq_id().Assign(*seq_id.GetSeqId()); in LoadSequenceHash()
458 get_id.SetSeq_id().SetSeq_id().Assign(*seq_id.GetSeqId()); in LoadSequenceLength()
486 get_id.SetSeq_id().SetSeq_id().Assign(*seq_id.GetSeqId()); in LoadSequenceType()
529 get_id.SetSeq_id().SetSeq_id().Assign(*ids[i].GetSeqId()); in LoadAccVers()
[all …]
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| H A D | reader_snp.cpp | 724 snp_info.SetSeq_id(*read_seq_id(stream)); in x_Read()
729 snp_info.SetSeq_id(*gi_id); in x_Read()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/data_loaders/genbank/ |
| H A D | reader_id2_base.cpp | 246 get_blob_id.SetSeq_id().SetSeq_id().SetSeq_id().Assign(seq_id); in x_SetResolve()
313 get_id.SetSeq_id().SetSeq_id().Assign(*seq_id.GetSeqId()); in LoadSeq_idSeq_ids()
330 get_id.SetSeq_id().SetSeq_id().Assign(*seq_id.GetSeqId()); in LoadSeq_idGi()
352 get_id.SetSeq_id().SetSeq_id().Assign(*seq_id.GetSeqId()); in LoadSeq_idAccVer()
378 get_id.SetSeq_id().SetSeq_id().Assign(*seq_id.GetSeqId()); in LoadSeq_idLabel()
405 get_id.SetSeq_id().SetSeq_id().Assign(*seq_id.GetSeqId()); in LoadSeq_idTaxId()
432 get_id.SetSeq_id().SetSeq_id().Assign(*seq_id.GetSeqId()); in LoadSequenceHash()
459 get_id.SetSeq_id().SetSeq_id().Assign(*seq_id.GetSeqId()); in LoadSequenceLength()
487 get_id.SetSeq_id().SetSeq_id().Assign(*seq_id.GetSeqId()); in LoadSequenceType()
530 get_id.SetSeq_id().SetSeq_id().Assign(*ids[i].GetSeqId()); in LoadAccVers()
[all …]
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| H A D | reader_snp.cpp | 724 snp_info.SetSeq_id(*read_seq_id(stream)); in x_Read()
729 snp_info.SetSeq_id(*gi_id); in x_Read()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/id2_fetch/ |
| H A D | id2_fetch_simple.cpp | 943 SetRequest().SetSeq_id().SetSeq_id().SetSeq_id().SetGi(gi); in Run()
954 SetRequest().SetSeq_id().SetSeq_id().SetSeq_id(*id); in Run()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/data_loaders/snp/ |
| H A D | id2snp_impl.cpp | 656 x_AddSeqIdRequest(request.SetSeq_id(), *info); in x_ProcessGetBlobId()
775 interval.SetSeq_id(*it.GetSeqId()); in x_LoadBlob()
796 interval.SetSeq_id(*it.GetSeqId()); in x_LoadBlob()
949 snp_reply.SetSeq_id(reply.SetSeq_id()); in x_ProcessReplyGetBlobId()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/seqqa/demo/ |
| H A D | demo_seqtest.cpp | 121 results_container->SetSource().SetSeq_id(*id); in Run()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/split/ |
| H A D | blob_splitter_maker.cpp | 507 interval.SetSeq_id(const_cast<CSeq_id&>(*id.GetSeqId())); in MakeLoc()
512 seq_ints.SetSeq_id(const_cast<CSeq_id&>(*id.GetSeqId())); in MakeLoc()
664 elem->SetSeq_id(const_cast<CSeq_id&>(**it)); in AddBioseqIds()
808 interval.SetSeq_id(const_cast<CSeq_id&>(*id.GetSeqId())); in SetLoc()
846 data->SetId().SetSeq_id(const_cast<CSeq_id&>(*id)); in GetChunkData()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/split/ |
| H A D | blob_splitter_maker.cpp | 507 interval.SetSeq_id(const_cast<CSeq_id&>(*id.GetSeqId())); in MakeLoc()
512 seq_ints.SetSeq_id(const_cast<CSeq_id&>(*id.GetSeqId())); in MakeLoc()
664 elem->SetSeq_id(const_cast<CSeq_id&>(**it)); in AddBioseqIds()
808 interval.SetSeq_id(const_cast<CSeq_id&>(*id.GetSeqId())); in SetLoc()
846 data->SetId().SetSeq_id(const_cast<CSeq_id&>(*id)); in GetChunkData()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objmgr/impl/ |
| H A D | snp_annot_info.hpp | 193 void SetSeq_id(const CSeq_id& id);
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objmgr/impl/ |
| H A D | snp_annot_info.hpp | 193 void SetSeq_id(const CSeq_id& id);
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/id_mapper/ |
| H A D | id_mapper.cpp | 542 Seq.SetSeq_id().Assign(TopSyn); in x_StripPseudoSeq()
587 Seq.SetSeq_id().Assign(TopSyn); in x_RecursiveSeqFix()
605 Seq.SetSeq_id().Assign(TopSyn); in x_RecursiveSeqFix()
628 Seq.SetSeq_id().Assign(TopSyn); in x_RecursiveSeqFix()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/readers/sra/ |
| H A D | wgsresolver_impl.cpp | 1039 req.SetSeq_id().SetSeq_id(const_cast<CSeq_id&>(id)); in GetPrefixes()
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| H A D | wgsread.cpp | 1377 split_id.SetSeq_id(id); in sx_SetSplitId()
1388 split_id.SetSeq_id(id); in sx_SetSplitId()
1421 loc_id.SetSeq_id(id); in sx_SetSplitInterval()
4470 intervals.SetSeq_id(feat_id); in AddContent()
4921 data->SetId().SetSeq_id(*info.main_id); in x_CreateFeaturesChunk()
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| H A D | snpread.cpp | 1941 packed->SetSeq_id(*GetSeqId()); in GetPackedFeatAnnot()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objects/seqloc/ |
| H A D | Seq_loc.hpp | 710 void SetSeq_id(const CSeq_id& id) in SetSeq_id() function in CSeq_loc_I
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objects/seqloc/ |
| H A D | Seq_loc.hpp | 710 void SetSeq_id(const CSeq_id& id) in SetSeq_id() function in CSeq_loc_I
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/ |
| H A D | snp_annot_info.cpp | 1058 void CSeq_annot_SNP_Info::SetSeq_id(const CSeq_id& id) in SetSeq_id() function in CSeq_annot_SNP_Info
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/ |
| H A D | snp_annot_info.cpp | 1058 void CSeq_annot_SNP_Info::SetSeq_id(const CSeq_id& id) in SetSeq_id() function in CSeq_annot_SNP_Info
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/validator/ |
| H A D | utilities.cpp | 930 it.SetSeq_id(*best_id); in UpdateToBestId()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/format/ |
| H A D | gather_items.cpp | 3453 it.SetSeq_id(orig); in s_FixId()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/format/ |
| H A D | gather_items.cpp | 3453 it.SetSeq_id(orig); in s_FixId()
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