Home
last modified time | relevance | path

Searched refs:SetStrand (Results 1 – 25 of 244) sorted by relevance

12345678910

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/
H A Dgff3_location_merger.cpp261 pInterval->SetStrand(locRecord.mStrand); in xGetRecordLocation()
272 pInterval->SetStrand(locRecord.mStrand); in xGetRecordLocation()
280 pTop->SetStrand(locRecord.mStrand); in xGetRecordLocation()
286 pBottom->SetStrand(locRecord.mStrand); in xGetRecordLocation()
297 pInterval->SetStrand(locRecord.mStrand); in xGetRecordLocation()
305 pBottom->SetStrand(locRecord.mStrand); in xGetRecordLocation()
311 pTop->SetStrand(locRecord.mStrand); in xGetRecordLocation()
H A Ducscregion_reader.cpp161 TopLoc->SetInt().SetStrand() = eNa_strand_plus; in xParseFeatureUCSCFormat()
163 TopLoc->SetInt().SetStrand() = eNa_strand_minus; in xParseFeatureUCSCFormat()
165 TopLoc->SetInt().SetStrand() = eNa_strand_plus; in xParseFeatureUCSCFormat()
167 TopLoc->SetInt().SetStrand() = eNa_strand_plus; in xParseFeatureUCSCFormat()
297 location->SetStrand(( fields[strand_field] == "+" ) ? in x_SetFeatureLocation()
H A Dagp_seq_entry.cpp154 loc.SetInt().SetStrand( eNa_strand_plus ); in OnGapOrComponent()
157 loc.SetInt().SetStrand( eNa_strand_minus ); in OnGapOrComponent()
160 loc.SetInt().SetStrand( eNa_strand_unknown ); in OnGapOrComponent()
163 loc.SetInt().SetStrand( eNa_strand_other ); in OnGapOrComponent()
H A Dagp_read.cpp283 loc.SetInt().SetStrand(eNa_strand_plus); in AgpRead()
285 loc.SetInt().SetStrand(eNa_strand_minus); in AgpRead()
287 loc.SetInt().SetStrand(eNa_strand_unknown); in AgpRead()
289 loc.SetInt().SetStrand(eNa_strand_other); in AgpRead()
H A Dbed_autosql_standard.cpp136 location.SetStrand(eNa_strand_plus); in SetLocation()
147 location.SetStrand(eNa_strand_minus); in SetLocation()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/readers/
H A Dgff3_location_merger.cpp261 pInterval->SetStrand(locRecord.mStrand); in xGetRecordLocation()
272 pInterval->SetStrand(locRecord.mStrand); in xGetRecordLocation()
280 pTop->SetStrand(locRecord.mStrand); in xGetRecordLocation()
286 pBottom->SetStrand(locRecord.mStrand); in xGetRecordLocation()
297 pInterval->SetStrand(locRecord.mStrand); in xGetRecordLocation()
305 pBottom->SetStrand(locRecord.mStrand); in xGetRecordLocation()
311 pTop->SetStrand(locRecord.mStrand); in xGetRecordLocation()
H A Ducscregion_reader.cpp161 TopLoc->SetInt().SetStrand() = eNa_strand_plus; in xParseFeatureUCSCFormat()
163 TopLoc->SetInt().SetStrand() = eNa_strand_minus; in xParseFeatureUCSCFormat()
165 TopLoc->SetInt().SetStrand() = eNa_strand_plus; in xParseFeatureUCSCFormat()
167 TopLoc->SetInt().SetStrand() = eNa_strand_plus; in xParseFeatureUCSCFormat()
297 location->SetStrand(( fields[strand_field] == "+" ) ? in x_SetFeatureLocation()
H A Dagp_seq_entry.cpp154 loc.SetInt().SetStrand( eNa_strand_plus ); in OnGapOrComponent()
157 loc.SetInt().SetStrand( eNa_strand_minus ); in OnGapOrComponent()
160 loc.SetInt().SetStrand( eNa_strand_unknown ); in OnGapOrComponent()
163 loc.SetInt().SetStrand( eNa_strand_other ); in OnGapOrComponent()
H A Dagp_read.cpp283 loc.SetInt().SetStrand(eNa_strand_plus); in AgpRead()
285 loc.SetInt().SetStrand(eNa_strand_minus); in AgpRead()
287 loc.SetInt().SetStrand(eNa_strand_unknown); in AgpRead()
289 loc.SetInt().SetStrand(eNa_strand_other); in AgpRead()
H A Dbed_autosql_standard.cpp136 location.SetStrand(eNa_strand_plus); in SetLocation()
147 location.SetStrand(eNa_strand_minus); in SetLocation()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/id_mapper/unit_test/
H A Dunit_test_id_mapper.cpp175 Expected->SetInt().SetStrand(eNa_strand_plus); in BOOST_AUTO_TEST_CASE()
185 OrigLoc->SetInt().SetStrand(eNa_strand_plus); in BOOST_AUTO_TEST_CASE()
197 Expected->SetInt().SetStrand(eNa_strand_plus); in BOOST_AUTO_TEST_CASE()
209 OrigLoc->SetInt().SetStrand(eNa_strand_plus); in BOOST_AUTO_TEST_CASE()
293 Expected.SetInt().SetStrand(eNa_strand_plus); in BOOST_AUTO_TEST_CASE()
329 Expected.SetInt().SetStrand(eNa_strand_plus); in BOOST_AUTO_TEST_CASE()
670 orig_ival.SetStrand(eNa_strand_plus); in BOOST_AUTO_TEST_CASE()
679 expect_ival.SetStrand(eNa_strand_plus); in BOOST_AUTO_TEST_CASE()
708 orig_ival.SetStrand(eNa_strand_plus); in BOOST_AUTO_TEST_CASE()
718 remap_ival.SetStrand(eNa_strand_plus); in BOOST_AUTO_TEST_CASE()
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/seqalign/
H A DSpliced_exon.cpp78 ret->SetStrand(GetProduct_strand()); in CreateRowSeq_interval()
81 ret->SetStrand(seg.GetProduct_strand()); in CreateRowSeq_interval()
97 ret->SetStrand(GetGenomic_strand()); in CreateRowSeq_interval()
100 ret->SetStrand(seg.GetGenomic_strand()); in CreateRowSeq_interval()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objects/seqalign/
H A DSpliced_exon.cpp78 ret->SetStrand(GetProduct_strand()); in CreateRowSeq_interval()
81 ret->SetStrand(seg.GetProduct_strand()); in CreateRowSeq_interval()
97 ret->SetStrand(GetGenomic_strand()); in CreateRowSeq_interval()
100 ret->SetStrand(seg.GetGenomic_strand()); in CreateRowSeq_interval()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/seq/
H A Dseq_loc_reverse_complementer.cpp64 rev_int->SetStrand(Reverse(s)); in s_SeqIntRevCmp()
76 rev_pnt->SetStrand(Reverse(s)); in s_SeqPntRevCmp()
106 rev_loc->SetPacked_pnt().SetStrand(Reverse( s_GetPackedPntStrand(loc) )); in GetReverseComplement()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objects/seq/
H A Dseq_loc_reverse_complementer.cpp64 rev_int->SetStrand(Reverse(s)); in s_SeqIntRevCmp()
76 rev_pnt->SetStrand(Reverse(s)); in s_SeqPntRevCmp()
106 rev_loc->SetPacked_pnt().SetStrand(Reverse( s_GetPackedPntStrand(loc) )); in GetReverseComplement()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/
H A Dtest_objmgr.cpp94 seqloc->SetInt().SetStrand(strand); in CreateSSeqLoc()
111 seqloc->SetInt().SetStrand(strand); in CreateSSeqLoc()
158 seqloc->SetInt().SetStrand(strand); in CreateBlastSearchQuery()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/api/
H A Dtest_objmgr.cpp94 seqloc->SetInt().SetStrand(strand); in CreateSSeqLoc()
111 seqloc->SetInt().SetStrand(strand); in CreateSSeqLoc()
158 seqloc->SetInt().SetStrand(strand); in CreateBlastSearchQuery()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/macro/unit_test/
H A Dunit_test_location_constraint.cpp90 feat->SetLocation().SetInt().SetStrand(eNa_strand_minus); in BOOST_AUTO_TEST_CASE()
139 loc_con->SetStrand(eStrand_constraint_any); in BOOST_AUTO_TEST_CASE()
141 loc_con->SetStrand(eStrand_constraint_plus); in BOOST_AUTO_TEST_CASE()
143 loc_con->SetStrand(eStrand_constraint_minus); in BOOST_AUTO_TEST_CASE()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/seqloc/
H A DSeq_loc_mix.cpp314 pnt.SetStrand(strand); in AddInterval()
322 ival.SetStrand(strand); in AddInterval()
329 void CSeq_loc_mix::SetStrand(ENa_strand strand) in SetStrand() function in CSeq_loc_mix
332 (*it)->SetStrand(strand); in SetStrand()
H A DPacked_seqint.cpp254 ival.SetStrand(strand); in AddInterval()
272 void CPacked_seqint::SetStrand(TStrand strand) in SetStrand() function in CPacked_seqint
275 (*it)->SetStrand(strand); in SetStrand()
H A DPacked_seqpnt.cpp195 SetStrand(Reverse(GetStrand())); in FlipStrand()
197 SetStrand(eNa_strand_minus); in FlipStrand()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objects/seqloc/
H A DSeq_loc_mix.cpp314 pnt.SetStrand(strand); in AddInterval()
322 ival.SetStrand(strand); in AddInterval()
329 void CSeq_loc_mix::SetStrand(ENa_strand strand) in SetStrand() function in CSeq_loc_mix
332 (*it)->SetStrand(strand); in SetStrand()
H A DPacked_seqint.cpp254 ival.SetStrand(strand); in AddInterval()
272 void CPacked_seqint::SetStrand(TStrand strand) in SetStrand() function in CPacked_seqint
275 (*it)->SetStrand(strand); in SetStrand()
H A DPacked_seqpnt.cpp195 SetStrand(Reverse(GetStrand())); in FlipStrand()
197 SetStrand(eNa_strand_minus); in FlipStrand()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/unit_test/
H A Dunit_test_loc_edit.cpp199 pnt->SetStrand(eNa_strand_minus); in BOOST_AUTO_TEST_CASE()
1262 loc1->SetStrand(eNa_strand_minus); in BOOST_AUTO_TEST_CASE()
1280 loc1->SetStrand(eNa_strand_minus); in BOOST_AUTO_TEST_CASE()
1310 loc1->SetStrand(eNa_strand_minus); in BOOST_AUTO_TEST_CASE()
1327 loc1->SetStrand(eNa_strand_minus); in BOOST_AUTO_TEST_CASE()
1443 a->SetInt().SetStrand(eNa_strand_plus); in BOOST_AUTO_TEST_CASE()
1444 b->SetInt().SetStrand(eNa_strand_plus); in BOOST_AUTO_TEST_CASE()
1445 d->SetPnt().SetStrand(eNa_strand_plus); in BOOST_AUTO_TEST_CASE()
1491 f1->SetStrand(eNa_strand_minus); in BOOST_AUTO_TEST_CASE()
1492 f2->SetStrand(eNa_strand_minus); in BOOST_AUTO_TEST_CASE()
[all …]

12345678910