/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/ |
H A D | gff3_location_merger.cpp | 261 pInterval->SetStrand(locRecord.mStrand); in xGetRecordLocation() 272 pInterval->SetStrand(locRecord.mStrand); in xGetRecordLocation() 280 pTop->SetStrand(locRecord.mStrand); in xGetRecordLocation() 286 pBottom->SetStrand(locRecord.mStrand); in xGetRecordLocation() 297 pInterval->SetStrand(locRecord.mStrand); in xGetRecordLocation() 305 pBottom->SetStrand(locRecord.mStrand); in xGetRecordLocation() 311 pTop->SetStrand(locRecord.mStrand); in xGetRecordLocation()
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H A D | ucscregion_reader.cpp | 161 TopLoc->SetInt().SetStrand() = eNa_strand_plus; in xParseFeatureUCSCFormat() 163 TopLoc->SetInt().SetStrand() = eNa_strand_minus; in xParseFeatureUCSCFormat() 165 TopLoc->SetInt().SetStrand() = eNa_strand_plus; in xParseFeatureUCSCFormat() 167 TopLoc->SetInt().SetStrand() = eNa_strand_plus; in xParseFeatureUCSCFormat() 297 location->SetStrand(( fields[strand_field] == "+" ) ? in x_SetFeatureLocation()
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H A D | agp_seq_entry.cpp | 154 loc.SetInt().SetStrand( eNa_strand_plus ); in OnGapOrComponent() 157 loc.SetInt().SetStrand( eNa_strand_minus ); in OnGapOrComponent() 160 loc.SetInt().SetStrand( eNa_strand_unknown ); in OnGapOrComponent() 163 loc.SetInt().SetStrand( eNa_strand_other ); in OnGapOrComponent()
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H A D | agp_read.cpp | 283 loc.SetInt().SetStrand(eNa_strand_plus); in AgpRead() 285 loc.SetInt().SetStrand(eNa_strand_minus); in AgpRead() 287 loc.SetInt().SetStrand(eNa_strand_unknown); in AgpRead() 289 loc.SetInt().SetStrand(eNa_strand_other); in AgpRead()
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H A D | bed_autosql_standard.cpp | 136 location.SetStrand(eNa_strand_plus); in SetLocation() 147 location.SetStrand(eNa_strand_minus); in SetLocation()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/readers/ |
H A D | gff3_location_merger.cpp | 261 pInterval->SetStrand(locRecord.mStrand); in xGetRecordLocation() 272 pInterval->SetStrand(locRecord.mStrand); in xGetRecordLocation() 280 pTop->SetStrand(locRecord.mStrand); in xGetRecordLocation() 286 pBottom->SetStrand(locRecord.mStrand); in xGetRecordLocation() 297 pInterval->SetStrand(locRecord.mStrand); in xGetRecordLocation() 305 pBottom->SetStrand(locRecord.mStrand); in xGetRecordLocation() 311 pTop->SetStrand(locRecord.mStrand); in xGetRecordLocation()
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H A D | ucscregion_reader.cpp | 161 TopLoc->SetInt().SetStrand() = eNa_strand_plus; in xParseFeatureUCSCFormat() 163 TopLoc->SetInt().SetStrand() = eNa_strand_minus; in xParseFeatureUCSCFormat() 165 TopLoc->SetInt().SetStrand() = eNa_strand_plus; in xParseFeatureUCSCFormat() 167 TopLoc->SetInt().SetStrand() = eNa_strand_plus; in xParseFeatureUCSCFormat() 297 location->SetStrand(( fields[strand_field] == "+" ) ? in x_SetFeatureLocation()
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H A D | agp_seq_entry.cpp | 154 loc.SetInt().SetStrand( eNa_strand_plus ); in OnGapOrComponent() 157 loc.SetInt().SetStrand( eNa_strand_minus ); in OnGapOrComponent() 160 loc.SetInt().SetStrand( eNa_strand_unknown ); in OnGapOrComponent() 163 loc.SetInt().SetStrand( eNa_strand_other ); in OnGapOrComponent()
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H A D | agp_read.cpp | 283 loc.SetInt().SetStrand(eNa_strand_plus); in AgpRead() 285 loc.SetInt().SetStrand(eNa_strand_minus); in AgpRead() 287 loc.SetInt().SetStrand(eNa_strand_unknown); in AgpRead() 289 loc.SetInt().SetStrand(eNa_strand_other); in AgpRead()
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H A D | bed_autosql_standard.cpp | 136 location.SetStrand(eNa_strand_plus); in SetLocation() 147 location.SetStrand(eNa_strand_minus); in SetLocation()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/id_mapper/unit_test/ |
H A D | unit_test_id_mapper.cpp | 175 Expected->SetInt().SetStrand(eNa_strand_plus); in BOOST_AUTO_TEST_CASE() 185 OrigLoc->SetInt().SetStrand(eNa_strand_plus); in BOOST_AUTO_TEST_CASE() 197 Expected->SetInt().SetStrand(eNa_strand_plus); in BOOST_AUTO_TEST_CASE() 209 OrigLoc->SetInt().SetStrand(eNa_strand_plus); in BOOST_AUTO_TEST_CASE() 293 Expected.SetInt().SetStrand(eNa_strand_plus); in BOOST_AUTO_TEST_CASE() 329 Expected.SetInt().SetStrand(eNa_strand_plus); in BOOST_AUTO_TEST_CASE() 670 orig_ival.SetStrand(eNa_strand_plus); in BOOST_AUTO_TEST_CASE() 679 expect_ival.SetStrand(eNa_strand_plus); in BOOST_AUTO_TEST_CASE() 708 orig_ival.SetStrand(eNa_strand_plus); in BOOST_AUTO_TEST_CASE() 718 remap_ival.SetStrand(eNa_strand_plus); in BOOST_AUTO_TEST_CASE() [all …]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/seqalign/ |
H A D | Spliced_exon.cpp | 78 ret->SetStrand(GetProduct_strand()); in CreateRowSeq_interval() 81 ret->SetStrand(seg.GetProduct_strand()); in CreateRowSeq_interval() 97 ret->SetStrand(GetGenomic_strand()); in CreateRowSeq_interval() 100 ret->SetStrand(seg.GetGenomic_strand()); in CreateRowSeq_interval()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objects/seqalign/ |
H A D | Spliced_exon.cpp | 78 ret->SetStrand(GetProduct_strand()); in CreateRowSeq_interval() 81 ret->SetStrand(seg.GetProduct_strand()); in CreateRowSeq_interval() 97 ret->SetStrand(GetGenomic_strand()); in CreateRowSeq_interval() 100 ret->SetStrand(seg.GetGenomic_strand()); in CreateRowSeq_interval()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/seq/ |
H A D | seq_loc_reverse_complementer.cpp | 64 rev_int->SetStrand(Reverse(s)); in s_SeqIntRevCmp() 76 rev_pnt->SetStrand(Reverse(s)); in s_SeqPntRevCmp() 106 rev_loc->SetPacked_pnt().SetStrand(Reverse( s_GetPackedPntStrand(loc) )); in GetReverseComplement()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objects/seq/ |
H A D | seq_loc_reverse_complementer.cpp | 64 rev_int->SetStrand(Reverse(s)); in s_SeqIntRevCmp() 76 rev_pnt->SetStrand(Reverse(s)); in s_SeqPntRevCmp() 106 rev_loc->SetPacked_pnt().SetStrand(Reverse( s_GetPackedPntStrand(loc) )); in GetReverseComplement()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/ |
H A D | test_objmgr.cpp | 94 seqloc->SetInt().SetStrand(strand); in CreateSSeqLoc() 111 seqloc->SetInt().SetStrand(strand); in CreateSSeqLoc() 158 seqloc->SetInt().SetStrand(strand); in CreateBlastSearchQuery()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/api/ |
H A D | test_objmgr.cpp | 94 seqloc->SetInt().SetStrand(strand); in CreateSSeqLoc() 111 seqloc->SetInt().SetStrand(strand); in CreateSSeqLoc() 158 seqloc->SetInt().SetStrand(strand); in CreateBlastSearchQuery()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/macro/unit_test/ |
H A D | unit_test_location_constraint.cpp | 90 feat->SetLocation().SetInt().SetStrand(eNa_strand_minus); in BOOST_AUTO_TEST_CASE() 139 loc_con->SetStrand(eStrand_constraint_any); in BOOST_AUTO_TEST_CASE() 141 loc_con->SetStrand(eStrand_constraint_plus); in BOOST_AUTO_TEST_CASE() 143 loc_con->SetStrand(eStrand_constraint_minus); in BOOST_AUTO_TEST_CASE()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/seqloc/ |
H A D | Seq_loc_mix.cpp | 314 pnt.SetStrand(strand); in AddInterval() 322 ival.SetStrand(strand); in AddInterval() 329 void CSeq_loc_mix::SetStrand(ENa_strand strand) in SetStrand() function in CSeq_loc_mix 332 (*it)->SetStrand(strand); in SetStrand()
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H A D | Packed_seqint.cpp | 254 ival.SetStrand(strand); in AddInterval() 272 void CPacked_seqint::SetStrand(TStrand strand) in SetStrand() function in CPacked_seqint 275 (*it)->SetStrand(strand); in SetStrand()
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H A D | Packed_seqpnt.cpp | 195 SetStrand(Reverse(GetStrand())); in FlipStrand() 197 SetStrand(eNa_strand_minus); in FlipStrand()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objects/seqloc/ |
H A D | Seq_loc_mix.cpp | 314 pnt.SetStrand(strand); in AddInterval() 322 ival.SetStrand(strand); in AddInterval() 329 void CSeq_loc_mix::SetStrand(ENa_strand strand) in SetStrand() function in CSeq_loc_mix 332 (*it)->SetStrand(strand); in SetStrand()
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H A D | Packed_seqint.cpp | 254 ival.SetStrand(strand); in AddInterval() 272 void CPacked_seqint::SetStrand(TStrand strand) in SetStrand() function in CPacked_seqint 275 (*it)->SetStrand(strand); in SetStrand()
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H A D | Packed_seqpnt.cpp | 195 SetStrand(Reverse(GetStrand())); in FlipStrand() 197 SetStrand(eNa_strand_minus); in FlipStrand()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/unit_test/ |
H A D | unit_test_loc_edit.cpp | 199 pnt->SetStrand(eNa_strand_minus); in BOOST_AUTO_TEST_CASE() 1262 loc1->SetStrand(eNa_strand_minus); in BOOST_AUTO_TEST_CASE() 1280 loc1->SetStrand(eNa_strand_minus); in BOOST_AUTO_TEST_CASE() 1310 loc1->SetStrand(eNa_strand_minus); in BOOST_AUTO_TEST_CASE() 1327 loc1->SetStrand(eNa_strand_minus); in BOOST_AUTO_TEST_CASE() 1443 a->SetInt().SetStrand(eNa_strand_plus); in BOOST_AUTO_TEST_CASE() 1444 b->SetInt().SetStrand(eNa_strand_plus); in BOOST_AUTO_TEST_CASE() 1445 d->SetPnt().SetStrand(eNa_strand_plus); in BOOST_AUTO_TEST_CASE() 1491 f1->SetStrand(eNa_strand_minus); in BOOST_AUTO_TEST_CASE() 1492 f2->SetStrand(eNa_strand_minus); in BOOST_AUTO_TEST_CASE() [all …]
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