| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/variation/ |
| H A D | Variation.cpp | 64 cons.SetVariation().m_consequence_parent = this; in Index()
65 cons.SetVariation().Index(); in Index()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objects/variation/ |
| H A D | Variation.cpp | 64 cons.SetVariation().m_consequence_parent = this; in Index()
65 cons.SetVariation().Index(); in Index()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/hgvs/ |
| H A D | special_irep_to_seqfeat.cpp | 40 seq_feat->SetData().SetVariation(*var_ref); in g_CreateSpecialSeqfeat()
87 seq_feat->SetData().SetVariation(*var_ref); in g_CreateSpecialSeqfeat()
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| H A D | post_process.cpp | 73 auto& var_inst = normalized_feat->SetData().SetVariation().SetData().SetInstance(); in GetNormalizedIdentity()
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| H A D | protein_irep_to_seqfeat.cpp | 205 seq_feat->SetData().SetVariation(*var_ref); in x_CreateSimpleVariantFeat()
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| H A D | na_irep_to_seqfeat.cpp | 536 seq_feat->SetData().SetVariation(*var_ref); in x_CreateSimpleVariantFeat()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/ |
| H A D | vcf_reader.cpp | 625 pFeat->SetData().SetVariation().SetData().SetSet().SetType( in xProcessDataLine()
627 pFeat->SetData().SetVariation().SetVariant_prop().SetVersion( 5 ); in xProcessDataLine()
668 pFeature->SetData().SetVariation().SetData().SetSet().SetVariations(); in xAssignVariationAlleleSet()
747 pFeature->SetData().SetVariation().SetData().SetSet().SetVariations(); in xAssignVariantSnv()
768 pFeature->SetData().SetVariation().SetData().SetSet().SetVariations(); in xAssignVariantMnv()
803 pFeature->SetData().SetVariation().SetData().SetSet().SetVariations(); in xAssignVariantDel()
826 pFeature->SetData().SetVariation().SetData().SetSet().SetVariations(); in xAssignVariantIns()
1330 CVariation_ref& variation = pFeature->SetData().SetVariation(); in xAssignVariationIds()
1393 VP& props = pFeat->SetData().SetVariation().SetVariant_prop(); in xAssignVariantProps()
1611 pFeat->SetData().SetVariation().SetOther_ids().push_back(pDbtag); in xAssignVariantProps()
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| H A D | gvf_reader.cpp | 791 feature.SetData().SetVariation( *pVariation ); in xFeatureSetVariation()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/readers/ |
| H A D | vcf_reader.cpp | 625 pFeat->SetData().SetVariation().SetData().SetSet().SetType( in xProcessDataLine()
627 pFeat->SetData().SetVariation().SetVariant_prop().SetVersion( 5 ); in xProcessDataLine()
668 pFeature->SetData().SetVariation().SetData().SetSet().SetVariations(); in xAssignVariationAlleleSet()
747 pFeature->SetData().SetVariation().SetData().SetSet().SetVariations(); in xAssignVariantSnv()
768 pFeature->SetData().SetVariation().SetData().SetSet().SetVariations(); in xAssignVariantMnv()
803 pFeature->SetData().SetVariation().SetData().SetSet().SetVariations(); in xAssignVariantDel()
826 pFeature->SetData().SetVariation().SetData().SetSet().SetVariations(); in xAssignVariantIns()
1330 CVariation_ref& variation = pFeature->SetData().SetVariation(); in xAssignVariationIds()
1393 VP& props = pFeat->SetData().SetVariation().SetVariant_prop(); in xAssignVariantProps()
1611 pFeat->SetData().SetVariation().SetOther_ids().push_back(pDbtag); in xAssignVariantProps()
[all …]
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| H A D | gvf_reader.cpp | 791 feature.SetData().SetVariation( *pVariation ); in xFeatureSetVariation()
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| /dports/games/opencity/opencity-0.0.6.5stable/src/ |
| H A D | guibar.h | 54 SetVariation( const OPENCITY_VARIATION eV );
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| H A D | guibar.cpp | 110 GUIBar::SetVariation( in SetVariation() function in GUIBar
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| /dports/games/briquolo/briquolo-0.5.7/src/MOGL/ |
| H A D | MOGL_ChoixNombre.h | 56 void SetVariation(float p_Variation);
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| H A D | MOGL_ChoixNombre.cpp | 137 void MOGL_ChoixNombre::SetVariation(float p_Variation) in SetVariation() function in MOGL_ChoixNombre
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/variation/test/shift/ |
| H A D | test-shift.cpp | 356 CVariation_ref& vr1 = (*feat1)->SetData().SetVariation(); in CompareVar()
357 CVariation_ref& vr2 = (*feat2)->SetData().SetVariation(); in CompareVar()
447 CVariation_ref& vr1 = (*feat1)->SetData().SetVariation(); in CheckShiftable()
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| /dports/games/opencity/opencity-0.0.6.5stable/src/simulator/ |
| H A D | simulator.h | 198 SetVariation(
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| H A D | simulator.cpp | 325 Simulator::SetVariation( in SetVariation() function in Simulator
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/misc/hgvs/ |
| H A D | variation_util.cpp | 467 CVariation_ref& vr = feat->SetData().SetVariation(); in Remap()
520 feat->SetLocation(feat->SetData().SetVariation().SetLocation()); in Remap()
521 feat->SetData().SetVariation().ResetLocation(); in Remap()
783 CVariation_ref& nuc_vr = nuc_feat->SetData().SetVariation(); in ProtToPrecursor()
1141 prot_variation_feat->SetData().SetVariation(*v); in PrecursorToProt()
1590 nuc_vf->SetData().SetVariation().SetData().SetInstance().Assign(vi); in x_SetVariantProperties()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/variation/ |
| H A D | variation_utils.cpp | 272 if( x_SetReference(feature.SetData().SetVariation(), in CorrectRefAllele()
1145 CVariation_ref& vref = feat.SetData().SetVariation(); in x_Shift()
1955 = feat.SetData().SetVariation().SetData().SetSet().SetVariations(); in ConvertExpandedInsertionToDelIns()
1956 …feat.SetData().SetVariation().SetData().SetSet().SetType(CVariation_ref::TData::TSet::eData_set_ty… in ConvertExpandedInsertionToDelIns()
1995 = feat.SetData().SetVariation().SetData().SetSet().SetVariations(); in ConvertExpandedDeletionToDelIns()
1996 …feat.SetData().SetVariation().SetData().SetSet().SetType(CVariation_ref::TData::TSet::eData_set_ty… in ConvertExpandedDeletionToDelIns()
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| /dports/games/gnubg/gnubg-1.06.002/ |
| H A D | set.c | 4166 SetVariation(const bgvariation bgvx) function
4188 SetVariation(VARIATION_HYPERGAMMON_1);
4196 SetVariation(VARIATION_HYPERGAMMON_2);
4204 SetVariation(VARIATION_HYPERGAMMON_3);
4212 SetVariation(VARIATION_NACKGAMMON);
4220 SetVariation(VARIATION_STANDARD);
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/misc/hgvs/test/ |
| H A D | hgvs2variation.cpp | 253 consequence->SetVariation().Assign(v); in ProcessVariation()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/cleanup/ |
| H A D | autogenerated_cleanup.cpp | 1428 …eanupSeqFeat_xref_E_E_data_data_variation_variation_consequence_E_variation( arg0.SetVariation() ); in x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_consequence_E()
1622 x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_ETC( arg0.SetVariation() ); in x_BasicCleanupSeqFeat_data()
1886 x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_ETC( arg0.SetVariation() ); in x_BasicCleanupSeqFeat_xref_E_E_data_ETC()
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| /dports/games/wyrmgus/Wyrmgus-3.5.4/src/include/unit/ |
| H A D | unit.h | 209 …void SetVariation(CUnitTypeVariation *new_variation, const CUnitType *new_type = nullptr, int imag…
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/cleanup/ |
| H A D | autogenerated_cleanup.cpp | 1968 …eanupSeqFeat_xref_E_E_data_data_variation_variation_consequence_E_variation( arg0.SetVariation() ); in x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_consequence_E()
2156 x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_ETC( arg0.SetVariation() ); in x_BasicCleanupSeqFeat_data_data()
2485 x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_ETC( arg0.SetVariation() ); in x_BasicCleanupSeqFeat_xref_E_E_data_data_ETC()
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| /dports/games/wyrmgus/Wyrmgus-3.5.4/src/unit/ |
| H A D | script_unit.cpp | 1970 unit->SetVariation(unit->Type->Variations[variation_index]); in CclSetUnitVariable()
1980 …unit->SetVariation(unit->Type->LayerVariations[image_layer][variation_index], nullptr, image_layer… in CclSetUnitVariable()
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