Home
last modified time | relevance | path

Searched refs:StrandOption_Both (Results 1 – 13 of 13) sorted by relevance

/dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/tasks/
H A DSequenceWalkerTask.cpp33 strandToWalk = (complTrans != nullptr) ? StrandOption_Both : StrandOption_DirectOnly; in SequenceWalkerConfig()
77 … if (config.strandToWalk == StrandOption_Both || config.strandToWalk == StrandOption_DirectOnly) { in prepareSubtasks()
81 …if (config.strandToWalk == StrandOption_Both || config.strandToWalk == StrandOption_ComplementOnly… in prepareSubtasks()
93 … if (config.strandToWalk == StrandOption_Both || config.strandToWalk == StrandOption_DirectOnly) { in prepareSubtasks()
101 …if (config.strandToWalk == StrandOption_Both || config.strandToWalk == StrandOption_ComplementOnly… in prepareSubtasks()
H A DSequenceDbiWalkerTask.cpp66 … if (config.strandToWalk == StrandOption_Both || config.strandToWalk == StrandOption_DirectOnly) { in prepareSubtasks()
70 …if (config.strandToWalk == StrandOption_Both || config.strandToWalk == StrandOption_ComplementOnly… in prepareSubtasks()
78 … if (config.strandToWalk == StrandOption_Both || config.strandToWalk == StrandOption_DirectOnly) { in prepareSubtasks()
86 …if (config.strandToWalk == StrandOption_Both || config.strandToWalk == StrandOption_ComplementOnly… in prepareSubtasks()
H A DSequenceWalkerTask.h36 StrandOption_Both enumerator
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Algorithm/src/smith_waterman/
H A DSmithWatermanSettings.h43 return StrandOption_Both == strand || StrandOption_ComplementOnly == strand; in isComplement()
46 return StrandOption_Both == strand || StrandOption_DirectOnly == strand; in isDirect()
/dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/ov_sequence/sequence_info/
H A DCodonOccurTask.cpp36 config.strandToWalk = StrandOption_Both; in CodonOccurTask()
48 config.strandToWalk = StrandOption_Both; in CodonOccurTask()
/dports/biology/ugene/ugene-40.1/src/plugins/annotator/src/
H A DCollocationsSearchAlgorithm.h65 …(-1), st(CollocationsAlgorithm::NormalSearch), includeBoundaries(true), strand(StrandOption_Both) { in CollocationsAlgorithmSettings()
H A DCollocationsDialogController.cpp204 cfg.strand = StrandOption_Both; in sl_searchClicked()
/dports/biology/ugene/ugene-40.1/src/plugins/smith_waterman/src/
H A DSWWorker.cpp252 return StrandOption_Both; in getStrand()
263 return StrandOption_Both; in getStrand()
290 case StrandOption_Both: in composeRichDoc()
H A DSWQuery.cpp126 settings.strand = StrandOption_Both; in getAlgorithmTask()
/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/sitecon/src/
H A DSiteconSearchTask.cpp38 c.strandToWalk = cfg.complTT == nullptr ? StrandOption_DirectOnly : StrandOption_Both; in SiteconSearchTask()
/dports/biology/ugene/ugene-40.1/src/plugins/weight_matrix/src/
H A DWeightMatrixSearchTask.cpp61 c.strandToWalk = cfg.complTT == nullptr ? StrandOption_DirectOnly : StrandOption_Both; in WeightMatrixSingleSearchTask()
/dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/util_smith_waterman/
H A DSmithWatermanDialog.cpp522 config.strand = StrandOption_Both; in readParameters()
676 case (StrandOption_Both): in loadDialogConfig()
761 dialogConfig->strand = (radioBoth->isChecked()) ? (StrandOption_Both) : (dialogConfig->strand); in saveDialogConfig()
/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/hmm2/src/u_search/
H A DHMMSearchTask.cpp311 config.strandToWalk = complTrans == NULL ? StrandOption_DirectOnly : StrandOption_Both; in getSWSubtask()