/dports/biology/seqan/seqan-library-2.4.0/include/seqan/align_parallel/ |
H A D | dp_parallel_scout_simd.h | 110 template<typename TAlignmentAlgorithm, typename TBuffer, typename TThreadContext> 111 struct ScoutSpecForAlignmentAlgorithm_<TAlignmentAlgorithm, 117 template<typename TAlignmentAlgorithm, typename TBuffer, typename TThreadContext, typename TTraits> 118 struct ScoutSpecForAlignmentAlgorithm_<TAlignmentAlgorithm,
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H A D | dp_parallel_scout.h | 134 template<typename TAlignmentAlgorithm, typename TThreadContext, typename TBuffer> 135 struct ScoutSpecForAlignmentAlgorithm_<TAlignmentAlgorithm, DPScoutState_<DPTiled<TBuffer, TThreadC…
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align_parallel/ |
H A D | dp_parallel_scout_simd.h | 110 template<typename TAlignmentAlgorithm, typename TBuffer, typename TThreadContext> 111 struct ScoutSpecForAlignmentAlgorithm_<TAlignmentAlgorithm, 117 template<typename TAlignmentAlgorithm, typename TBuffer, typename TThreadContext, typename TTraits> 118 struct ScoutSpecForAlignmentAlgorithm_<TAlignmentAlgorithm,
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H A D | dp_parallel_scout.h | 134 template<typename TAlignmentAlgorithm, typename TThreadContext, typename TBuffer> 135 struct ScoutSpecForAlignmentAlgorithm_<TAlignmentAlgorithm, DPScoutState_<DPTiled<TBuffer, TThreadC…
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align/ |
H A D | dp_scout.h | 172 template <typename TAlignmentAlgorithm> 175 typedef If<HasTerminationCriterium_<TAlignmentAlgorithm>,
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H A D | dp_algorithm_impl.h | 1378 … typename TScoreScheme, typename TBandSwitch, typename TAlignmentAlgorithm, typename TTraceFlag> 1387 DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag> const & dpProfile) in _computeAlignment() argument 1395 typedef typename DefaultScoreMatrixSpec_<TAlignmentAlgorithm>::Type TScoreMatrixSpec; in _computeAlignment() 1403 typedef typename ScoutSpecForAlignmentAlgorithm_<TAlignmentAlgorithm>::Type TDPScoutSpec; in _computeAlignment()
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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/align/ |
H A D | dp_scout.h | 137 template <typename TAlignmentAlgorithm, typename TScoutState> 140 typedef If<HasTerminationCriterium_<TAlignmentAlgorithm>,
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H A D | dp_algorithm_impl.h | 1263 … typename TAlignmentAlgorithm, typename TGapScheme, typename TTraceFlag, typename TExecPolicy> 1271 … DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy> const & /*dpProfile*/) in SEQAN_FUNC_ENABLE_IF() 1282 … typename TAlignmentAlgorithm, typename TGapScheme, typename TTraceFlag, typename TExecPolicy> 1290 … DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy> const & dpProfile) in SEQAN_FUNC_ENABLE_IF() 1319 … typename TAlignmentAlgorithm, typename TGapScheme, typename TTraceFlag, typename TExecPolicy> 1327 … DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy> const & dpProfile) in SEQAN_FUNC_ENABLE_IF() 1347 … typename TAlignmentAlgorithm, typename TGapScheme, typename TTraceFlag, typename TExecPolicy> 1356 … DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy> const & dpProfile) in _computeAlignment() argument 1359 typedef typename DefaultScoreMatrixSpec_<TAlignmentAlgorithm>::Type TScoreMatrixSpec; in _computeAlignment() 1371 …typedef typename ScoutSpecForAlignmentAlgorithm_<TAlignmentAlgorithm, TScoutState>::Type TDPScoutS… in _computeAlignment()
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H A D | dp_scout_simd.h | 117 template<typename TAlignmentAlgorithm> 118 struct ScoutSpecForAlignmentAlgorithm_<TAlignmentAlgorithm, DPScoutState_<SimdAlignEqualLength> > 123 template<typename TAlignmentAlgorithm, typename TTraits> 124 struct ScoutSpecForAlignmentAlgorithm_<TAlignmentAlgorithm, DPScoutState_<SimdAlignVariableLength<T…
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align/ |
H A D | dp_scout.h | 137 template <typename TAlignmentAlgorithm, typename TScoutState> 140 typedef If<HasTerminationCriterium_<TAlignmentAlgorithm>,
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H A D | dp_algorithm_impl.h | 1263 … typename TAlignmentAlgorithm, typename TGapScheme, typename TTraceFlag, typename TExecPolicy> 1271 … DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy> const & /*dpProfile*/) in SEQAN_FUNC_ENABLE_IF() 1282 … typename TAlignmentAlgorithm, typename TGapScheme, typename TTraceFlag, typename TExecPolicy> 1290 … DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy> const & dpProfile) in SEQAN_FUNC_ENABLE_IF() 1319 … typename TAlignmentAlgorithm, typename TGapScheme, typename TTraceFlag, typename TExecPolicy> 1327 … DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy> const & dpProfile) in SEQAN_FUNC_ENABLE_IF() 1347 … typename TAlignmentAlgorithm, typename TGapScheme, typename TTraceFlag, typename TExecPolicy> 1356 … DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy> const & dpProfile) in _computeAlignment() argument 1359 typedef typename DefaultScoreMatrixSpec_<TAlignmentAlgorithm>::Type TScoreMatrixSpec; in _computeAlignment() 1371 …typedef typename ScoutSpecForAlignmentAlgorithm_<TAlignmentAlgorithm, TScoutState>::Type TDPScoutS… in _computeAlignment()
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H A D | dp_scout_simd.h | 117 template<typename TAlignmentAlgorithm> 118 struct ScoutSpecForAlignmentAlgorithm_<TAlignmentAlgorithm, DPScoutState_<SimdAlignEqualLength> > 123 template<typename TAlignmentAlgorithm, typename TTraits> 124 struct ScoutSpecForAlignmentAlgorithm_<TAlignmentAlgorithm, DPScoutState_<SimdAlignVariableLength<T…
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/seeds/ |
H A D | banded_chain_alignment_impl.h | 1156 … typename TScoreScheme, typename TBandSwitch, typename TAlignmentAlgorithm, typename TTraceFlag> 1164 DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag> const & dpProfile) in _computeAlignment() argument
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/seeds/ |
H A D | banded_chain_alignment_impl.h | 1250 … typename TScoreScheme, typename TBandSwitch, typename TAlignmentAlgorithm, typename TTraceFlag, 1259 … DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy> const & dpProfile) in _computeAlignment() argument
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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/seeds/ |
H A D | banded_chain_alignment_impl.h | 1250 … typename TScoreScheme, typename TBandSwitch, typename TAlignmentAlgorithm, typename TTraceFlag, 1259 … DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy> const & dpProfile) in _computeAlignment() argument
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