/dports/biology/seqan1/seqan-1.3.1/seqan/basic/ |
H A D | basic_iterator_base.h | 73 IsSameType<typename RemoveConst_<TContainer>::Type, TContainer>::VALUE, 74 TContainer const, 125 Value<TContainer> 130 Value<TContainer> 140 GetValue<TContainer> 145 GetValue<TContainer> 155 Reference<TContainer> 160 Reference<TContainer> 173 typedef TContainer Type; 178 typedef TContainer Type; [all …]
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H A D | basic_iterator_position.h | 61 template <typename TContainer> 127 template <typename TContainer> 134 template <typename TContainer> 143 template <typename TContainer> 156 template <typename TContainer> 163 template <typename TContainer> 184 template <typename TContainer> 191 template <typename TContainer> 251 template <typename TContainer> 264 template <typename TContainer> [all …]
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H A D | basic_iterator_adapt_std.h | 104 template <typename TContainer> 139 template <typename TContainer> 145 template <typename TContainer> 156 template <typename TContainer> 162 template <typename TContainer> 212 template <typename TContainer> 225 template <typename TContainer> 238 template <typename TContainer> 251 template <typename TContainer> 264 template <typename TContainer> [all …]
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H A D | basic_iterator_adaptor.h | 72 class Iter<TContainer, AdaptorIterator<TIterator, TSpec> > 75 typename Pointer_<TContainer>::Type data_container; 180 inline typename Parameter_<TContainer>::Type 184 return _toParameter<TContainer>(me.data_container); 187 inline typename Parameter_<TContainer>::Type 191 return _toParameter<TContainer>(me.data_container); 197 setContainer(Iter<TContainer, AdaptorIterator<TIterator, TSpec> > & me, typename Parameter_<TContai… 432 inline Iter<TContainer, AdaptorIterator<TIterator, TSpec> > 441 inline Iter<TContainer, AdaptorIterator<TIterator, TSpec> > 450 inline Iter<TContainer, AdaptorIterator<TIterator, TSpec> > [all …]
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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/basic/ |
H A D | iterator_base.h | 96 IsSameType<typename RemoveConst_<TContainer>::Type, TContainer>::VALUE, 97 TContainer const, 167 Value<TContainer> 173 Value<TContainer> 183 GetValue<TContainer> 189 GetValue<TContainer> 199 Reference<TContainer> 205 Reference<TContainer> 229 typedef TContainer Type; 235 typedef TContainer Type; [all …]
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H A D | iterator_adapt_std.h | 110 template <typename TContainer> 196 template <typename TContainer> 203 template <typename TContainer> 215 template <typename TContainer> 222 template <typename TContainer> 234 template <typename TContainer> 241 template <typename TContainer> 245 template <typename TContainer> 253 template <typename TContainer> 284 template <typename TContainer> [all …]
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H A D | iterator_position.h | 80 template <typename TContainer> 143 template <typename TContainer> 144 struct Size<Iter<TContainer, PositionIterator> > : Size<TContainer> {}; 146 template <typename TContainer> 147 struct Position<Iter<TContainer, PositionIterator> > : Position<TContainer> {}; 149 template <typename TContainer> 150 struct Difference<Iter<TContainer, PositionIterator> > : Difference<TContainer> {}; 153 struct Value<Iter<TContainer, PositionIterator> > : Value<TContainer> {}; 156 struct GetValue<Iter<TContainer, PositionIterator> > : GetValue<TContainer> {}; 159 struct Reference<Iter<TContainer, PositionIterator> > : Reference<TContainer> {}; [all …]
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H A D | iterator_adaptor.h | 89 class Iter<TContainer, AdaptorIterator<TIterator, TSpec> > 92 typename Pointer_<TContainer>::Type data_container; 266 inline TContainer & 269 return _referenceCast<TContainer &>(me.data_container); 273 inline TContainer & 573 inline Iter<TContainer, AdaptorIterator<TIterator, TSpec> > 582 inline Iter<TContainer, AdaptorIterator<TIterator, TSpec> > 590 inline Iter<TContainer, AdaptorIterator<TIterator, TSpec> > 716 typedef Iter<TContainer, TSpec> TIter; 718 TContainer &cont = container(iter); [all …]
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/basic/ |
H A D | iterator_base.h | 96 IsSameType<typename RemoveConst_<TContainer>::Type, TContainer>::VALUE, 97 TContainer const, 167 Value<TContainer> 173 Value<TContainer> 183 GetValue<TContainer> 189 GetValue<TContainer> 199 Reference<TContainer> 205 Reference<TContainer> 229 typedef TContainer Type; 235 typedef TContainer Type; [all …]
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H A D | iterator_adapt_std.h | 110 template <typename TContainer> 196 template <typename TContainer> 203 template <typename TContainer> 215 template <typename TContainer> 222 template <typename TContainer> 234 template <typename TContainer> 241 template <typename TContainer> 245 template <typename TContainer> 253 template <typename TContainer> 284 template <typename TContainer> [all …]
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H A D | iterator_position.h | 80 template <typename TContainer> 143 template <typename TContainer> 144 struct Size<Iter<TContainer, PositionIterator> > : Size<TContainer> {}; 146 template <typename TContainer> 147 struct Position<Iter<TContainer, PositionIterator> > : Position<TContainer> {}; 149 template <typename TContainer> 150 struct Difference<Iter<TContainer, PositionIterator> > : Difference<TContainer> {}; 153 struct Value<Iter<TContainer, PositionIterator> > : Value<TContainer> {}; 156 struct GetValue<Iter<TContainer, PositionIterator> > : GetValue<TContainer> {}; 159 struct Reference<Iter<TContainer, PositionIterator> > : Reference<TContainer> {}; [all …]
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H A D | iterator_adaptor.h | 89 class Iter<TContainer, AdaptorIterator<TIterator, TSpec> > 92 typename Pointer_<TContainer>::Type data_container; 266 inline TContainer & 269 return _referenceCast<TContainer &>(me.data_container); 273 inline TContainer & 573 inline Iter<TContainer, AdaptorIterator<TIterator, TSpec> > 582 inline Iter<TContainer, AdaptorIterator<TIterator, TSpec> > 590 inline Iter<TContainer, AdaptorIterator<TIterator, TSpec> > 716 typedef Iter<TContainer, TSpec> TIter; 718 TContainer &cont = container(iter); [all …]
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/basic/ |
H A D | iterator_base.h | 96 IsSameType<typename RemoveConst_<TContainer>::Type, TContainer>::VALUE, 97 TContainer const, 167 Value<TContainer> 173 Value<TContainer> 183 GetValue<TContainer> 189 GetValue<TContainer> 199 Reference<TContainer> 205 Reference<TContainer> 229 typedef TContainer Type; 235 typedef TContainer Type; [all …]
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H A D | iterator_adapt_std.h | 94 template <typename TContainer> 180 template <typename TContainer> 187 template <typename TContainer> 199 template <typename TContainer> 206 template <typename TContainer> 218 template <typename TContainer> 225 template <typename TContainer> 229 template <typename TContainer> 237 template <typename TContainer> 270 template <typename TContainer> [all …]
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H A D | iterator_adaptor.h | 89 class Iter<TContainer, AdaptorIterator<TIterator, TSpec> > 92 typename Pointer_<TContainer>::Type data_container; 272 inline SEQAN_HOST_DEVICE TContainer & 275 return _referenceCast<TContainer &>(me.data_container); 279 inline SEQAN_HOST_DEVICE TContainer & 604 inline Iter<TContainer, AdaptorIterator<TIterator, TSpec> > 614 inline Iter<TContainer, AdaptorIterator<TIterator, TSpec> > 623 inline Iter<TContainer, AdaptorIterator<TIterator, TSpec> > 760 typedef Iter<TContainer, TSpec> TIter; 762 TContainer &cont = container(iter); [all …]
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H A D | iterator_position.h | 80 template <typename TContainer> 143 template <typename TContainer> 144 struct Size<Iter<TContainer, PositionIterator> > : Size<TContainer> {}; 146 template <typename TContainer> 147 struct Position<Iter<TContainer, PositionIterator> > : Position<TContainer> {}; 149 template <typename TContainer> 150 struct Reference<Iter<TContainer, PositionIterator> > : Reference<TContainer> {}; 152 template <typename TContainer> 153 struct Difference<Iter<TContainer, PositionIterator> > : Difference<TContainer> {}; 163 template <typename TContainer> [all …]
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/sequence/ |
H A D | container_view.h | 181 template <typename TContainer, typename TSpec> 183 public ContainerView<TContainer, TSpec> 231 template <typename TContainer, typename TSpec> 234 template <typename TContainer, typename TSpec> 251 template <typename TContainer, typename TSpec> 254 typedef TContainer Type; 261 template <typename TContainer, typename TSpec> 268 template <typename TContainer, typename TSpec> 274 template <typename TContainer, typename TSpec> 304 public Iterator<TContainer, Standard> {}; [all …]
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H A D | adapt_stl_container.h | 374 _iterStl(TContainer & me, 615 resize(TContainer && me, 629 resize(TContainer && me, 645 clear(TContainer && me) 790 assign(TContainer && me, 800 assign(TContainer && me, 809 assign(TContainer && me, 826 insert(TContainer && me, 1119 erase(TContainer && me, 1147 erase(TContainer && me, [all …]
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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/sequence/ |
H A D | container_view.h | 181 template <typename TContainer, typename TSpec> 183 public ContainerView<TContainer, TSpec> 231 template <typename TContainer, typename TSpec> 234 template <typename TContainer, typename TSpec> 251 template <typename TContainer, typename TSpec> 254 typedef TContainer Type; 261 template <typename TContainer, typename TSpec> 268 template <typename TContainer, typename TSpec> 274 template <typename TContainer, typename TSpec> 304 public Iterator<TContainer, Standard> {}; [all …]
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/sequence/ |
H A D | container_view.h | 133 template <typename TContainer, typename TSpec> 135 public ContainerView<TContainer, TSpec> 183 template <typename TContainer, typename TSpec> 186 template <typename TContainer, typename TSpec> 203 template <typename TContainer, typename TSpec> 206 typedef TContainer Type; 213 template <typename TContainer, typename TSpec> 220 template <typename TContainer, typename TSpec> 226 template <typename TContainer, typename TSpec> 256 public Iterator<TContainer, Standard> {}; [all …]
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/seeds/ |
H A D | basic_iter_indirect.h | 53 template <typename TContainer, typename TWrappedIter> 54 class Iter<TContainer, Indirect<TWrappedIter> > 73 template <typename TContainer, typename TWrappedIter> 83 template <typename TContainer, typename TWrappedIter> 85 operator==(Iter<TContainer, Indirect<TWrappedIter> > const & a, Iter<TContainer, Indirect<TWrappedI… 93 operator!=(Iter<TContainer, Indirect<TWrappedIter> > const & a, Iter<TContainer, Indirect<TWrappedI… 99 Iter<TContainer, Indirect<TWrappedIter> > 108 inline Iter<TContainer, Indirect<TWrappedIter> > & 117 inline Iter<TContainer, Indirect<TWrappedIter> > 128 inline Iter<TContainer, Indirect<TWrappedIter> > & [all …]
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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/seeds/ |
H A D | basic_iter_indirect.h | 53 template <typename TContainer, typename TWrappedIter> 54 class Iter<TContainer, Indirect<TWrappedIter> > 73 template <typename TContainer, typename TWrappedIter> 83 template <typename TContainer, typename TWrappedIter> 85 operator==(Iter<TContainer, Indirect<TWrappedIter> > const & a, Iter<TContainer, Indirect<TWrappedI… 93 operator!=(Iter<TContainer, Indirect<TWrappedIter> > const & a, Iter<TContainer, Indirect<TWrappedI… 99 Iter<TContainer, Indirect<TWrappedIter> > 108 inline Iter<TContainer, Indirect<TWrappedIter> > & 117 inline Iter<TContainer, Indirect<TWrappedIter> > 128 inline Iter<TContainer, Indirect<TWrappedIter> > & [all …]
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/parallel/ |
H A D | parallel_algorithms.h | 585 template <typename TContainer> 605 template <typename TContainer> 623 template <typename TContainer> 639 template <typename TContainer> 780 template <typename TContainer> 782 maxElement(TContainer const & c) in maxElement() 798 template <typename TContainer> 800 minElement(TContainer const & c) in minElement() 815 template <typename TContainer> 816 inline void sort(TContainer && c) in sort() [all …]
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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/parallel/ |
H A D | parallel_algorithms.h | 585 template <typename TContainer> 605 template <typename TContainer> 623 template <typename TContainer> 639 template <typename TContainer> 780 template <typename TContainer> 782 maxElement(TContainer const & c) in maxElement() 798 template <typename TContainer> 800 minElement(TContainer const & c) in minElement() 815 template <typename TContainer> 816 inline void sort(TContainer && c) in sort() [all …]
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/seeds/ |
H A D | basic_iter_indirect.h | 53 template <typename TContainer, typename TWrappedIter> 54 class Iter<TContainer, Indirect<TWrappedIter> > 73 template <typename TContainer, typename TWrappedIter> 83 template <typename TContainer, typename TWrappedIter> 85 operator==(Iter<TContainer, Indirect<TWrappedIter> > const & a, Iter<TContainer, Indirect<TWrappedI… 94 operator!=(Iter<TContainer, Indirect<TWrappedIter> > const & a, Iter<TContainer, Indirect<TWrappedI… 101 Iter<TContainer, Indirect<TWrappedIter> > 111 inline Iter<TContainer, Indirect<TWrappedIter> > & 121 inline Iter<TContainer, Indirect<TWrappedIter> > 133 inline Iter<TContainer, Indirect<TWrappedIter> > & [all …]
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