| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/align/ |
| H A D | dp_algorithm_impl.h | 1263 … typename TAlignmentAlgorithm, typename TGapScheme, typename TTraceFlag, typename TExecPolicy>
1271 … DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy> const & /*dpProfile*/) in SEQAN_FUNC_ENABLE_IF()
1282 … typename TAlignmentAlgorithm, typename TGapScheme, typename TTraceFlag, typename TExecPolicy>
1290 … DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy> const & dpProfile) in SEQAN_FUNC_ENABLE_IF()
1319 … typename TAlignmentAlgorithm, typename TGapScheme, typename TTraceFlag, typename TExecPolicy>
1327 … DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy> const & dpProfile) in SEQAN_FUNC_ENABLE_IF()
1347 … typename TAlignmentAlgorithm, typename TGapScheme, typename TTraceFlag, typename TExecPolicy>
1356 … DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy> const & dpProfile) in _computeAlignment() argument
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align/ |
| H A D | dp_algorithm_impl.h | 1263 … typename TAlignmentAlgorithm, typename TGapScheme, typename TTraceFlag, typename TExecPolicy>
1271 … DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy> const & /*dpProfile*/) in SEQAN_FUNC_ENABLE_IF()
1282 … typename TAlignmentAlgorithm, typename TGapScheme, typename TTraceFlag, typename TExecPolicy>
1290 … DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy> const & dpProfile) in SEQAN_FUNC_ENABLE_IF()
1319 … typename TAlignmentAlgorithm, typename TGapScheme, typename TTraceFlag, typename TExecPolicy>
1327 … DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy> const & dpProfile) in SEQAN_FUNC_ENABLE_IF()
1347 … typename TAlignmentAlgorithm, typename TGapScheme, typename TTraceFlag, typename TExecPolicy>
1356 … DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy> const & dpProfile) in _computeAlignment() argument
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align/ |
| H A D | dp_algorithm_impl.h | 1377 template <typename TScoreValue, typename TGapScheme, typename TTraceTarget, typename TScoutState, t…
1380 _computeAlignment(DPContext<TScoreValue, TGapScheme> & dpContext, in _computeAlignment() argument
1387 DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag> const & dpProfile) in _computeAlignment()
1389 typedef typename GetDPScoreMatrix<DPContext<TScoreValue, TGapScheme> >::Type TDPScoreMatrixHost; in _computeAlignment()
1392 typedef typename GetDPTraceMatrix<DPContext<TScoreValue, TGapScheme> >::Type TDPTraceMatrixHost; in _computeAlignment()
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/seeds/ |
| H A D | banded_chain_alignment_impl.h | 1155 template <typename TGapScheme, typename TTraceTarget, typename TScoutState, typename TSequenceH, ty…
1164 DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag> const & dpProfile) in _computeAlignment() argument
1167 typedef DPContext<TScoreValue, TGapScheme> TDPContext; in _computeAlignment()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/seeds/ |
| H A D | banded_chain_alignment_impl.h | 1249 template <typename TGapScheme, typename TTraceTarget, typename TScoutState, typename TSequenceH, ty…
1259 … DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy> const & dpProfile) in _computeAlignment() argument
1262 …typedef DPContext<DPCell_<TScoreValue, TGapScheme>, typename TraceBitMap_<TScoreValue>::Type> TDPC… in _computeAlignment()
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/seeds/ |
| H A D | banded_chain_alignment_impl.h | 1249 template <typename TGapScheme, typename TTraceTarget, typename TScoutState, typename TSequenceH, ty…
1259 … DPProfile_<TAlignmentAlgorithm, TGapScheme, TTraceFlag, TExecPolicy> const & dpProfile) in _computeAlignment() argument
1262 …typedef DPContext<DPCell_<TScoreValue, TGapScheme>, typename TraceBitMap_<TScoreValue>::Type> TDPC… in _computeAlignment()
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