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Searched refs:TGridPoint (Results 1 – 6 of 6) sorted by relevance

/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/seeds/
H A Dbanded_chain_alignment_impl.h741 typedef Pair<TSeedPosition, TSeedPosition> TGridPoint; in _initializeBandedChain() typedef
796 TGridPoint gridBegin; in _initializeBandedChain()
802 TGridPoint gridEnd; in _initializeBandedChain()
898 typedef Pair<TPosition, TPosition> TGridPoint; in _computeGapArea() typedef
900 TGridPoint gridBegin(scoutState._horizontalNextGridOrigin, scoutState._verticalNextGridOrigin); in _computeGapArea()
958 typedef Pair<TPosition, TPosition> TGridPoint; in _computeAnchorArea() typedef
960 TGridPoint gridBegin(scoutState._horizontalNextGridOrigin, scoutState._verticalNextGridOrigin); in _computeAnchorArea()
961 TGridPoint gridEnd(endPositionH(currentSeed) + bandExtension, in _computeAnchorArea()
1032 typedef Pair<TPosition, TPosition> TGridPoint; in _finishBandedChain() typedef
1035 …TGridPoint gridBegin(dpScoutState._horizontalNextGridOrigin, dpScoutState._verticalNextGridOrigin); in _finishBandedChain()
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H A Dbanded_chain_alignment_traceback.h78 template <typename TTraceSet, typename TGridPoint>
80 _adaptLocalTracesToGlobalGrid(TTraceSet & traceSet, TGridPoint const & gridBegin)
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/seeds/
H A Dbanded_chain_alignment_impl.h829 typedef Pair<TSeedPosition, TSeedPosition> TGridPoint; in _initializeBandedChain() typedef
883 TGridPoint gridBegin; in _initializeBandedChain()
889 TGridPoint gridEnd; in _initializeBandedChain()
988 typedef Pair<TPosition, TPosition> TGridPoint; in _computeGapArea() typedef
990 TGridPoint gridBegin(scoutState._horizontalNextGridOrigin, scoutState._verticalNextGridOrigin); in _computeGapArea()
1051 typedef Pair<TPosition, TPosition> TGridPoint; in _computeAnchorArea() typedef
1053 TGridPoint gridBegin(scoutState._horizontalNextGridOrigin, scoutState._verticalNextGridOrigin); in _computeAnchorArea()
1054 TGridPoint gridEnd(endPositionH(currentSeed) + bandExtension, in _computeAnchorArea()
1126 typedef Pair<TPosition, TPosition> TGridPoint; in _finishBandedChain() typedef
1129 …TGridPoint gridBegin(dpScoutState._horizontalNextGridOrigin, dpScoutState._verticalNextGridOrigin); in _finishBandedChain()
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H A Dbanded_chain_alignment_traceback.h78 template <typename TTraceSet, typename TGridPoint>
80 _adaptLocalTracesToGlobalGrid(TTraceSet & traceSet, TGridPoint const & gridBegin)
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/seeds/
H A Dbanded_chain_alignment_impl.h829 typedef Pair<TSeedPosition, TSeedPosition> TGridPoint; in _initializeBandedChain() typedef
883 TGridPoint gridBegin; in _initializeBandedChain()
889 TGridPoint gridEnd; in _initializeBandedChain()
988 typedef Pair<TPosition, TPosition> TGridPoint; in _computeGapArea() typedef
990 TGridPoint gridBegin(scoutState._horizontalNextGridOrigin, scoutState._verticalNextGridOrigin); in _computeGapArea()
1051 typedef Pair<TPosition, TPosition> TGridPoint; in _computeAnchorArea() typedef
1053 TGridPoint gridBegin(scoutState._horizontalNextGridOrigin, scoutState._verticalNextGridOrigin); in _computeAnchorArea()
1054 TGridPoint gridEnd(endPositionH(currentSeed) + bandExtension, in _computeAnchorArea()
1126 typedef Pair<TPosition, TPosition> TGridPoint; in _finishBandedChain() typedef
1129 …TGridPoint gridBegin(dpScoutState._horizontalNextGridOrigin, dpScoutState._verticalNextGridOrigin); in _finishBandedChain()
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H A Dbanded_chain_alignment_traceback.h78 template <typename TTraceSet, typename TGridPoint>
80 _adaptLocalTracesToGlobalGrid(TTraceSet & traceSet, TGridPoint const & gridBegin)