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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/index/
H A Dfind2_vstree_factory.h76 template <typename TIndex, typename TSpec>
79 typedef TIndex Type;
82 template <typename TIndex, typename TSpec>
85 typedef TIndex const Type;
94 template <typename TIndex, typename TSpec>
97 typedef typename IfView<TIndex, TIndex, Holder<TIndex> >::Type Type;
127 Factory(TIndex & index) :
152 Factory(TIndex & index) :
298 inline Iter<TIndex, VSTree<TSpec> >
301 return Iter<TIndex, VSTree<TSpec> >(_host(factory, typename IsView<TIndex>::Type()));
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H A Dindex_esa_stree.h208 Iter(TIndex &_index):
348 Iter(TIndex &_index):
447 Iter(TIndex &_index):
649 inline typename Size<TIndex>::Type
661 inline typename Size<TIndex>::Type
874 inline TIndex const &
880 inline TIndex &
1160 … typename Size<TIndex>::Type seqNo = getSeqNo(*occ, stringSetLimits((TIndex const&)index));
1206 … typename Size<TIndex>::Type seqNo = getSeqNo(*occ, stringSetLimits((TIndex const&)index));
2878 inline typename Size<TIndex>::Type & _dfsLcp(Iter< TIndex, VSTree< BottomUp<TSpec> > > &it)
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H A Dfind2_functors.h61 template <typename TIndex, typename TSpec = typename ExecSpec<TIndex>::Type>
86 template <typename TIndex, typename TSpec>
92 template <typename TIndex, typename TSpec>
102 template <typename TIndex, typename TSpec>
103 struct View<OccurrencesCounter_<TIndex, TSpec> >
112 template <typename TIndex, typename TSpec>
113 struct Device<OccurrencesCounter_<TIndex, TSpec> >
144 template <typename TIndex, typename TSpec>
146 view(OccurrencesCounter_<TIndex, TSpec> & counter)
159 template <typename TIndex, typename TSpec>
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H A Dindex_sa_truncated.h62 typedef Index<TText, IndexSa<TIndexSpec> > TIndex; typedef
63 typedef Iter<TIndex, VSTree<TopDown<TSpec> > > TBase;
64 typedef typename VertexDescriptor<TIndex>::Type TVertexDesc;
65 typedef typename Size<TIndex>::Type TDepth;
74 Iter(TIndex &_index) : in Iter()
79 Iter(TIndex &_index, MinimalCtor) : in Iter()
84 Iter(TIndex &_index, TVertexDesc const &_vDesc) : in Iter()
144 template < typename TIndex, class TSpec >
146 getEmptyEdges(Iter< TIndex, VSTree<TSpec> > const &it) in getEmptyEdges() argument
148 typedef typename Size<TIndex>::Type TSize; in getEmptyEdges()
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H A Dfind_index_lambda.h62 template <typename TState, typename TIndex, typename TNeedle,
66 TIndex & index,
143 template <typename TState, typename TIndex, typename TNeedle,
147 TIndex & index,
171 TIndex & index,
195 template <typename TIndex, typename TNeedle,
198 find(TIndex & text,
225 template <typename TIndex, typename TNeedle,
228 find(TIndex & index,
251 template <typename TIndex, typename TNeedle,
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H A Dfind_pigeonhole.h339 Holder<TIndex> data_host;
497 TIndex &index = host(pattern);
541 typename TIndex,
557 TIndex const &index = host(pattern);
643 inline typename SAValue<TIndex>::Type
653 inline typename SAValue<TIndex>::Type
678 inline typename SAValue<TIndex >::Type
687 inline typename SAValue<TIndex>::Type
713 inline typename SAValue<TIndex >::Type
723 inline typename SAValue<TIndex>::Type
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/index/
H A Dfind2_vstree_factory.h76 template <typename TIndex, typename TSpec>
79 typedef TIndex Type;
82 template <typename TIndex, typename TSpec>
85 typedef TIndex const Type;
94 template <typename TIndex, typename TSpec>
97 typedef typename IfView<TIndex, TIndex, Holder<TIndex> >::Type Type;
127 Factory(TIndex & index) :
152 Factory(TIndex & index) :
298 inline Iter<TIndex, VSTree<TSpec> >
301 return Iter<TIndex, VSTree<TSpec> >(_host(factory, typename IsView<TIndex>::Type()));
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H A Dindex_esa_stree.h208 Iter(TIndex &_index):
348 Iter(TIndex &_index):
447 Iter(TIndex &_index):
649 inline typename Size<TIndex>::Type
661 inline typename Size<TIndex>::Type
874 inline TIndex const &
880 inline TIndex &
1160 … typename Size<TIndex>::Type seqNo = getSeqNo(*occ, stringSetLimits((TIndex const&)index));
1206 … typename Size<TIndex>::Type seqNo = getSeqNo(*occ, stringSetLimits((TIndex const&)index));
2878 inline typename Size<TIndex>::Type & _dfsLcp(Iter< TIndex, VSTree< BottomUp<TSpec> > > &it)
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H A Dfind2_functors.h61 template <typename TIndex, typename TSpec = typename ExecSpec<TIndex>::Type>
86 template <typename TIndex, typename TSpec>
92 template <typename TIndex, typename TSpec>
102 template <typename TIndex, typename TSpec>
103 struct View<OccurrencesCounter_<TIndex, TSpec> >
112 template <typename TIndex, typename TSpec>
113 struct Device<OccurrencesCounter_<TIndex, TSpec> >
144 template <typename TIndex, typename TSpec>
146 view(OccurrencesCounter_<TIndex, TSpec> & counter)
159 template <typename TIndex, typename TSpec>
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H A Dindex_sa_truncated.h62 typedef Index<TText, IndexSa<TIndexSpec> > TIndex; typedef
63 typedef Iter<TIndex, VSTree<TopDown<TSpec> > > TBase;
64 typedef typename VertexDescriptor<TIndex>::Type TVertexDesc;
65 typedef typename Size<TIndex>::Type TDepth;
74 Iter(TIndex &_index) : in Iter()
79 Iter(TIndex &_index, MinimalCtor) : in Iter()
84 Iter(TIndex &_index, TVertexDesc const &_vDesc) : in Iter()
144 template < typename TIndex, class TSpec >
146 getEmptyEdges(Iter< TIndex, VSTree<TSpec> > const &it) in getEmptyEdges() argument
148 typedef typename Size<TIndex>::Type TSize; in getEmptyEdges()
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H A Dfind_index_lambda.h62 template <typename TState, typename TIndex, typename TNeedle,
66 TIndex & index,
143 template <typename TState, typename TIndex, typename TNeedle,
147 TIndex & index,
171 TIndex & index,
195 template <typename TIndex, typename TNeedle,
198 find(TIndex & text,
225 template <typename TIndex, typename TNeedle,
228 find(TIndex & index,
251 template <typename TIndex, typename TNeedle,
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H A Dfind_pigeonhole.h339 Holder<TIndex> data_host;
497 TIndex &index = host(pattern);
541 typename TIndex,
557 TIndex const &index = host(pattern);
643 inline typename SAValue<TIndex>::Type
653 inline typename SAValue<TIndex>::Type
678 inline typename SAValue<TIndex >::Type
687 inline typename SAValue<TIndex>::Type
713 inline typename SAValue<TIndex >::Type
723 inline typename SAValue<TIndex>::Type
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/index/
H A Dfind2_vstree_factory.h76 template <typename TIndex, typename TSpec>
79 typedef TIndex Type;
82 template <typename TIndex, typename TSpec>
85 typedef TIndex const Type;
94 template <typename TIndex, typename TSpec>
97 typedef typename IfView<TIndex, TIndex, Holder<TIndex> >::Type Type;
106 template <typename TIndex, typename TSpec>
127 Factory(TIndex & index) :
152 Factory(TIndex & index) :
301 return Iter<TIndex, VSTree<TSpec> >(_host(factory, typename IsView<TIndex>::Type()));
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H A Dindex_esa_stree.h51 SEQAN_CONCEPT(StringTreeConcept, (TIndex))
57 TIndex index;
237 Iter(TIndex &_index):
377 Iter(TIndex &_index):
476 Iter(TIndex &_index):
678 inline typename Size<TIndex>::Type
909 SEQAN_HOST_DEVICE inline TIndex &
1189 … typename Size<TIndex>::Type seqNo = getSeqNo(*occ, stringSetLimits((TIndex const&)index));
1235 … typename Size<TIndex>::Type seqNo = getSeqNo(*occ, stringSetLimits((TIndex const&)index));
2907 inline typename Size<TIndex>::Type & _dfsLcp(Iter< TIndex, VSTree< BottomUp<TSpec> > > &it)
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H A Dfind2_functors.h61 template <typename TIndex, typename TSpec = typename ExecSpec<TIndex>::Type>
86 template <typename TIndex, typename TSpec>
93 template <typename TIndex, typename TSpec>
100 template <typename TIndex, typename TSpec>
110 template <typename TIndex, typename TSpec>
120 template <typename TIndex, typename TSpec>
152 template <typename TIndex, typename TSpec>
167 template <typename TIndex, typename TSpec>
168 inline typename Size<TIndex>::Type
175 template <typename TIndex, typename TSpec>
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H A Dindex_sa_truncated.h62 typedef Index<TText, IndexSa<TIndexSpec> > TIndex; typedef
63 typedef Iter<TIndex, VSTree<TopDown<TSpec> > > TBase;
64 typedef typename VertexDescriptor<TIndex>::Type TVertexDesc;
65 typedef typename Size<TIndex>::Type TDepth;
74 Iter(TIndex &_index) : in Iter()
79 Iter(TIndex &_index, MinimalCtor) : in Iter()
84 Iter(TIndex &_index, TVertexDesc const &_vDesc) : in Iter()
144 template < typename TIndex, class TSpec >
146 getEmptyEdges(Iter< TIndex, VSTree<TSpec> > const &it) in getEmptyEdges() argument
148 typedef typename Size<TIndex>::Type TSize; in getEmptyEdges()
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H A Dfind_pigeonhole.h339 Holder<TIndex> data_host;
497 TIndex &index = host(pattern);
541 typename TIndex,
557 TIndex const &index = host(pattern);
643 inline typename SAValue<TIndex>::Type
653 inline typename SAValue<TIndex>::Type
678 inline typename SAValue<TIndex >::Type
687 inline typename SAValue<TIndex>::Type
713 inline typename SAValue<TIndex >::Type
723 inline typename SAValue<TIndex>::Type
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/dports/sysutils/vector/vector-0.10.0/cargo-crates/elastic_responses-0.21.0-pre.4/src/
H A Dbulk.rs167 impl<TIndex, TType, TId> BulkResponse<TIndex, TType, TId> {
367 impl<TIndex, TType, TId> BulkErrorsResponse<TIndex, TType, TId> {
413 Result<OkItem<TIndex, TType, TId>, ErrorItem<TIndex, TType, TId>>;
425 index: TIndex,
433 impl<TIndex, TType, TId> OkItem<TIndex, TType, TId> {
492 index: TIndex,
498 impl<TIndex, TType, TId> ErrorItem<TIndex, TType, TId> {
520 impl<TIndex, TType, TId> fmt::Display for ErrorItem<TIndex, TType, TId>
535 impl<TIndex, TType, TId> Error for ErrorItem<TIndex, TType, TId>
577 index: TIndex,
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/dports/biology/seqan1/seqan-1.3.1/seqan/index/
H A Dindex_esa_stree.h118 Iter(TIndex &_index):
218 Iter(TIndex &_index):
290 Iter(TIndex &_index):
693 inline TIndex const &
699 inline TIndex &
898 TIndex &index = container(it);
904 typename Size<TIndex>::Type seqNo = getSeqNo(*occ, stringSetLimits((TIndex const&)index));
944 TIndex &index = container(it);
950 typename Size<TIndex>::Type seqNo = getSeqNo(*occ, stringSetLimits((TIndex const&)index));
2078 typename Size<TIndex>::Type,
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/searchjoin/
H A Dfinder.h124 typedef Finder_<TIndex, TIndex, TBacktrackingExt> TFinderExt;
125 typedef Finder_<TIndex, TIndex, TBacktrackingApx> TFinderApx;
396 Finder_<TIndex, TIndex, TBacktracking> const & finder)
398 typedef typename TextIterator_<TIndex, TIndex, TBacktracking>::Type TTextIterator;
492 Finder_<TIndex, TIndex, Backtracking<EditDistance, Top> > const & finder)
495 typedef Finder_<TIndex, TIndex, TBacktracking> TFinder;
510 Finder_<TIndex, TIndex, Backtracking<HammingDistance, Top> > const & finder)
513 typedef Finder_<TIndex, TIndex, TBacktracking> TFinder;
534 typedef Finder_<TIndex, TIndex, TBacktrackingApx> TFinderApx;
535 typedef Finder_<TIndex, TIndex, TBacktrackingExt> TFinderExt;
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/dports/science/py-chainer/chainer-7.8.0/chainerx_cc/chainerx/cuda/cuda_device/
H A Dindexing.cu42 TIndex num_indices, in TakeCudaKernel()
43 TIndex target_dim, in TakeCudaKernel()
44 TIndex right_dim, in TakeCudaKernel()
45 TIndex num_iters, in TakeCudaKernel()
65 index = max(TIndex{0}, min(index, TIndex{target_dim} - 1)); in TakeCudaKernel()
81 TIndex target_dim, in AddAtCudaKernel()
82 TIndex b_dim, in AddAtCudaKernel()
83 TIndex right_dim, in AddAtCudaKernel()
84 TIndex b_right_dim, in AddAtCudaKernel()
85 TIndex num_iters, in AddAtCudaKernel()
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/dports/science/opensph/sph-7de6c044339f649e3d19e61f735a6a24572b792a/core/objects/containers/
H A DTuple.h65 template <std::size_t TIndex>
66 using Value = TupleValue<TIndex, SelectType<TIndex, TArgs...>>;
84 template <std::size_t TIndex>
89 template <std::size_t TIndex>
94 template <std::size_t TIndex>
102 this->get<TIndex>() = other.template get<TIndex>(); in copyAssign()
111 this->get<TIndex>() = other.template get<TIndex>(); in copyAssign()
120 this->get<TIndex>() = other.template forward<TIndex>(); in moveAssign()
130 return this->get<TIndex>() == other.template get<TIndex>() && in isEqual()
246 template <std::size_t TIndex>
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objects/seq/
H A Dseqport_util.hpp56 typedef unsigned int TIndex; typedef in CSeqportUtil
57 typedef pair<TIndex, TIndex> TPair;
62 CBadIndex(TIndex idx, string method) in CBadIndex()
242 static const string& GetIupacaa3(TIndex ncbistdaa);
269 TIndex idx);
275 TIndex idx);
285 TIndex idx);
291 TIndex idx);
317 TIndex idx);
330 static TIndex GetMapToIndex(ESeq_code_type from_type,
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objects/seq/
H A Dseqport_util.hpp56 typedef unsigned int TIndex; typedef in CSeqportUtil
57 typedef pair<TIndex, TIndex> TPair;
62 CBadIndex(TIndex idx, string method) in CBadIndex()
242 static const string& GetIupacaa3(TIndex ncbistdaa);
269 TIndex idx);
275 TIndex idx);
285 TIndex idx);
291 TIndex idx);
317 TIndex idx);
330 static TIndex GetMapToIndex(ESeq_code_type from_type,
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/index/
H A Dtest_index_finder.cpp55 typedef TIndex_ TIndex; typedef in IndexFinderTest
56 typedef IndexTest<TIndex> TBase;
57 typedef Finder<TIndex> TFinder;
80 typedef typename TestFixture::TIndex TIndex; in SEQAN_TYPED_TEST() typedef
81 Finder<TIndex> finder; in SEQAN_TYPED_TEST()
87 typedef Index<std::string, IndexSa<> > TIndex; in SEQAN_TYPED_TEST() typedef
89 TIndex index(str); in SEQAN_TYPED_TEST()
90 Iterator<TIndex, TopDown<> >::Type iter(index); in SEQAN_TYPED_TEST()
95 typedef Index<std::vector<char>, IndexSa<> > TIndex; in SEQAN_TYPED_TEST() typedef
97 TIndex index(vec); in SEQAN_TYPED_TEST()
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