/dports/biology/seqan/seqan-library-2.4.0/include/seqan/index/ |
H A D | find2_vstree_factory.h | 76 template <typename TIndex, typename TSpec> 79 typedef TIndex Type; 82 template <typename TIndex, typename TSpec> 85 typedef TIndex const Type; 94 template <typename TIndex, typename TSpec> 97 typedef typename IfView<TIndex, TIndex, Holder<TIndex> >::Type Type; 127 Factory(TIndex & index) : 152 Factory(TIndex & index) : 298 inline Iter<TIndex, VSTree<TSpec> > 301 return Iter<TIndex, VSTree<TSpec> >(_host(factory, typename IsView<TIndex>::Type())); [all …]
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H A D | index_esa_stree.h | 208 Iter(TIndex &_index): 348 Iter(TIndex &_index): 447 Iter(TIndex &_index): 649 inline typename Size<TIndex>::Type 661 inline typename Size<TIndex>::Type 874 inline TIndex const & 880 inline TIndex & 1160 … typename Size<TIndex>::Type seqNo = getSeqNo(*occ, stringSetLimits((TIndex const&)index)); 1206 … typename Size<TIndex>::Type seqNo = getSeqNo(*occ, stringSetLimits((TIndex const&)index)); 2878 inline typename Size<TIndex>::Type & _dfsLcp(Iter< TIndex, VSTree< BottomUp<TSpec> > > &it) [all …]
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H A D | find2_functors.h | 61 template <typename TIndex, typename TSpec = typename ExecSpec<TIndex>::Type> 86 template <typename TIndex, typename TSpec> 92 template <typename TIndex, typename TSpec> 102 template <typename TIndex, typename TSpec> 103 struct View<OccurrencesCounter_<TIndex, TSpec> > 112 template <typename TIndex, typename TSpec> 113 struct Device<OccurrencesCounter_<TIndex, TSpec> > 144 template <typename TIndex, typename TSpec> 146 view(OccurrencesCounter_<TIndex, TSpec> & counter) 159 template <typename TIndex, typename TSpec> [all …]
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H A D | index_sa_truncated.h | 62 typedef Index<TText, IndexSa<TIndexSpec> > TIndex; typedef 63 typedef Iter<TIndex, VSTree<TopDown<TSpec> > > TBase; 64 typedef typename VertexDescriptor<TIndex>::Type TVertexDesc; 65 typedef typename Size<TIndex>::Type TDepth; 74 Iter(TIndex &_index) : in Iter() 79 Iter(TIndex &_index, MinimalCtor) : in Iter() 84 Iter(TIndex &_index, TVertexDesc const &_vDesc) : in Iter() 144 template < typename TIndex, class TSpec > 146 getEmptyEdges(Iter< TIndex, VSTree<TSpec> > const &it) in getEmptyEdges() argument 148 typedef typename Size<TIndex>::Type TSize; in getEmptyEdges() [all …]
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H A D | find_index_lambda.h | 62 template <typename TState, typename TIndex, typename TNeedle, 66 TIndex & index, 143 template <typename TState, typename TIndex, typename TNeedle, 147 TIndex & index, 171 TIndex & index, 195 template <typename TIndex, typename TNeedle, 198 find(TIndex & text, 225 template <typename TIndex, typename TNeedle, 228 find(TIndex & index, 251 template <typename TIndex, typename TNeedle, [all …]
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H A D | find_pigeonhole.h | 339 Holder<TIndex> data_host; 497 TIndex &index = host(pattern); 541 typename TIndex, 557 TIndex const &index = host(pattern); 643 inline typename SAValue<TIndex>::Type 653 inline typename SAValue<TIndex>::Type 678 inline typename SAValue<TIndex >::Type 687 inline typename SAValue<TIndex>::Type 713 inline typename SAValue<TIndex >::Type 723 inline typename SAValue<TIndex>::Type [all …]
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/index/ |
H A D | find2_vstree_factory.h | 76 template <typename TIndex, typename TSpec> 79 typedef TIndex Type; 82 template <typename TIndex, typename TSpec> 85 typedef TIndex const Type; 94 template <typename TIndex, typename TSpec> 97 typedef typename IfView<TIndex, TIndex, Holder<TIndex> >::Type Type; 127 Factory(TIndex & index) : 152 Factory(TIndex & index) : 298 inline Iter<TIndex, VSTree<TSpec> > 301 return Iter<TIndex, VSTree<TSpec> >(_host(factory, typename IsView<TIndex>::Type())); [all …]
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H A D | index_esa_stree.h | 208 Iter(TIndex &_index): 348 Iter(TIndex &_index): 447 Iter(TIndex &_index): 649 inline typename Size<TIndex>::Type 661 inline typename Size<TIndex>::Type 874 inline TIndex const & 880 inline TIndex & 1160 … typename Size<TIndex>::Type seqNo = getSeqNo(*occ, stringSetLimits((TIndex const&)index)); 1206 … typename Size<TIndex>::Type seqNo = getSeqNo(*occ, stringSetLimits((TIndex const&)index)); 2878 inline typename Size<TIndex>::Type & _dfsLcp(Iter< TIndex, VSTree< BottomUp<TSpec> > > &it) [all …]
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H A D | find2_functors.h | 61 template <typename TIndex, typename TSpec = typename ExecSpec<TIndex>::Type> 86 template <typename TIndex, typename TSpec> 92 template <typename TIndex, typename TSpec> 102 template <typename TIndex, typename TSpec> 103 struct View<OccurrencesCounter_<TIndex, TSpec> > 112 template <typename TIndex, typename TSpec> 113 struct Device<OccurrencesCounter_<TIndex, TSpec> > 144 template <typename TIndex, typename TSpec> 146 view(OccurrencesCounter_<TIndex, TSpec> & counter) 159 template <typename TIndex, typename TSpec> [all …]
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H A D | index_sa_truncated.h | 62 typedef Index<TText, IndexSa<TIndexSpec> > TIndex; typedef 63 typedef Iter<TIndex, VSTree<TopDown<TSpec> > > TBase; 64 typedef typename VertexDescriptor<TIndex>::Type TVertexDesc; 65 typedef typename Size<TIndex>::Type TDepth; 74 Iter(TIndex &_index) : in Iter() 79 Iter(TIndex &_index, MinimalCtor) : in Iter() 84 Iter(TIndex &_index, TVertexDesc const &_vDesc) : in Iter() 144 template < typename TIndex, class TSpec > 146 getEmptyEdges(Iter< TIndex, VSTree<TSpec> > const &it) in getEmptyEdges() argument 148 typedef typename Size<TIndex>::Type TSize; in getEmptyEdges() [all …]
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H A D | find_index_lambda.h | 62 template <typename TState, typename TIndex, typename TNeedle, 66 TIndex & index, 143 template <typename TState, typename TIndex, typename TNeedle, 147 TIndex & index, 171 TIndex & index, 195 template <typename TIndex, typename TNeedle, 198 find(TIndex & text, 225 template <typename TIndex, typename TNeedle, 228 find(TIndex & index, 251 template <typename TIndex, typename TNeedle, [all …]
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H A D | find_pigeonhole.h | 339 Holder<TIndex> data_host; 497 TIndex &index = host(pattern); 541 typename TIndex, 557 TIndex const &index = host(pattern); 643 inline typename SAValue<TIndex>::Type 653 inline typename SAValue<TIndex>::Type 678 inline typename SAValue<TIndex >::Type 687 inline typename SAValue<TIndex>::Type 713 inline typename SAValue<TIndex >::Type 723 inline typename SAValue<TIndex>::Type [all …]
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/index/ |
H A D | find2_vstree_factory.h | 76 template <typename TIndex, typename TSpec> 79 typedef TIndex Type; 82 template <typename TIndex, typename TSpec> 85 typedef TIndex const Type; 94 template <typename TIndex, typename TSpec> 97 typedef typename IfView<TIndex, TIndex, Holder<TIndex> >::Type Type; 106 template <typename TIndex, typename TSpec> 127 Factory(TIndex & index) : 152 Factory(TIndex & index) : 301 return Iter<TIndex, VSTree<TSpec> >(_host(factory, typename IsView<TIndex>::Type())); [all …]
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H A D | index_esa_stree.h | 51 SEQAN_CONCEPT(StringTreeConcept, (TIndex)) 57 TIndex index; 237 Iter(TIndex &_index): 377 Iter(TIndex &_index): 476 Iter(TIndex &_index): 678 inline typename Size<TIndex>::Type 909 SEQAN_HOST_DEVICE inline TIndex & 1189 … typename Size<TIndex>::Type seqNo = getSeqNo(*occ, stringSetLimits((TIndex const&)index)); 1235 … typename Size<TIndex>::Type seqNo = getSeqNo(*occ, stringSetLimits((TIndex const&)index)); 2907 inline typename Size<TIndex>::Type & _dfsLcp(Iter< TIndex, VSTree< BottomUp<TSpec> > > &it) [all …]
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H A D | find2_functors.h | 61 template <typename TIndex, typename TSpec = typename ExecSpec<TIndex>::Type> 86 template <typename TIndex, typename TSpec> 93 template <typename TIndex, typename TSpec> 100 template <typename TIndex, typename TSpec> 110 template <typename TIndex, typename TSpec> 120 template <typename TIndex, typename TSpec> 152 template <typename TIndex, typename TSpec> 167 template <typename TIndex, typename TSpec> 168 inline typename Size<TIndex>::Type 175 template <typename TIndex, typename TSpec> [all …]
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H A D | index_sa_truncated.h | 62 typedef Index<TText, IndexSa<TIndexSpec> > TIndex; typedef 63 typedef Iter<TIndex, VSTree<TopDown<TSpec> > > TBase; 64 typedef typename VertexDescriptor<TIndex>::Type TVertexDesc; 65 typedef typename Size<TIndex>::Type TDepth; 74 Iter(TIndex &_index) : in Iter() 79 Iter(TIndex &_index, MinimalCtor) : in Iter() 84 Iter(TIndex &_index, TVertexDesc const &_vDesc) : in Iter() 144 template < typename TIndex, class TSpec > 146 getEmptyEdges(Iter< TIndex, VSTree<TSpec> > const &it) in getEmptyEdges() argument 148 typedef typename Size<TIndex>::Type TSize; in getEmptyEdges() [all …]
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H A D | find_pigeonhole.h | 339 Holder<TIndex> data_host; 497 TIndex &index = host(pattern); 541 typename TIndex, 557 TIndex const &index = host(pattern); 643 inline typename SAValue<TIndex>::Type 653 inline typename SAValue<TIndex>::Type 678 inline typename SAValue<TIndex >::Type 687 inline typename SAValue<TIndex>::Type 713 inline typename SAValue<TIndex >::Type 723 inline typename SAValue<TIndex>::Type [all …]
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/dports/sysutils/vector/vector-0.10.0/cargo-crates/elastic_responses-0.21.0-pre.4/src/ |
H A D | bulk.rs | 167 impl<TIndex, TType, TId> BulkResponse<TIndex, TType, TId> { 367 impl<TIndex, TType, TId> BulkErrorsResponse<TIndex, TType, TId> { 413 Result<OkItem<TIndex, TType, TId>, ErrorItem<TIndex, TType, TId>>; 425 index: TIndex, 433 impl<TIndex, TType, TId> OkItem<TIndex, TType, TId> { 492 index: TIndex, 498 impl<TIndex, TType, TId> ErrorItem<TIndex, TType, TId> { 520 impl<TIndex, TType, TId> fmt::Display for ErrorItem<TIndex, TType, TId> 535 impl<TIndex, TType, TId> Error for ErrorItem<TIndex, TType, TId> 577 index: TIndex, [all …]
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/dports/biology/seqan1/seqan-1.3.1/seqan/index/ |
H A D | index_esa_stree.h | 118 Iter(TIndex &_index): 218 Iter(TIndex &_index): 290 Iter(TIndex &_index): 693 inline TIndex const & 699 inline TIndex & 898 TIndex &index = container(it); 904 typename Size<TIndex>::Type seqNo = getSeqNo(*occ, stringSetLimits((TIndex const&)index)); 944 TIndex &index = container(it); 950 typename Size<TIndex>::Type seqNo = getSeqNo(*occ, stringSetLimits((TIndex const&)index)); 2078 typename Size<TIndex>::Type, [all …]
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/searchjoin/ |
H A D | finder.h | 124 typedef Finder_<TIndex, TIndex, TBacktrackingExt> TFinderExt; 125 typedef Finder_<TIndex, TIndex, TBacktrackingApx> TFinderApx; 396 Finder_<TIndex, TIndex, TBacktracking> const & finder) 398 typedef typename TextIterator_<TIndex, TIndex, TBacktracking>::Type TTextIterator; 492 Finder_<TIndex, TIndex, Backtracking<EditDistance, Top> > const & finder) 495 typedef Finder_<TIndex, TIndex, TBacktracking> TFinder; 510 Finder_<TIndex, TIndex, Backtracking<HammingDistance, Top> > const & finder) 513 typedef Finder_<TIndex, TIndex, TBacktracking> TFinder; 534 typedef Finder_<TIndex, TIndex, TBacktrackingApx> TFinderApx; 535 typedef Finder_<TIndex, TIndex, TBacktrackingExt> TFinderExt; [all …]
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/dports/science/py-chainer/chainer-7.8.0/chainerx_cc/chainerx/cuda/cuda_device/ |
H A D | indexing.cu | 42 TIndex num_indices, in TakeCudaKernel() 43 TIndex target_dim, in TakeCudaKernel() 44 TIndex right_dim, in TakeCudaKernel() 45 TIndex num_iters, in TakeCudaKernel() 65 index = max(TIndex{0}, min(index, TIndex{target_dim} - 1)); in TakeCudaKernel() 81 TIndex target_dim, in AddAtCudaKernel() 82 TIndex b_dim, in AddAtCudaKernel() 83 TIndex right_dim, in AddAtCudaKernel() 84 TIndex b_right_dim, in AddAtCudaKernel() 85 TIndex num_iters, in AddAtCudaKernel() [all …]
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/dports/science/opensph/sph-7de6c044339f649e3d19e61f735a6a24572b792a/core/objects/containers/ |
H A D | Tuple.h | 65 template <std::size_t TIndex> 66 using Value = TupleValue<TIndex, SelectType<TIndex, TArgs...>>; 84 template <std::size_t TIndex> 89 template <std::size_t TIndex> 94 template <std::size_t TIndex> 102 this->get<TIndex>() = other.template get<TIndex>(); in copyAssign() 111 this->get<TIndex>() = other.template get<TIndex>(); in copyAssign() 120 this->get<TIndex>() = other.template forward<TIndex>(); in moveAssign() 130 return this->get<TIndex>() == other.template get<TIndex>() && in isEqual() 246 template <std::size_t TIndex> [all …]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objects/seq/ |
H A D | seqport_util.hpp | 56 typedef unsigned int TIndex; typedef in CSeqportUtil 57 typedef pair<TIndex, TIndex> TPair; 62 CBadIndex(TIndex idx, string method) in CBadIndex() 242 static const string& GetIupacaa3(TIndex ncbistdaa); 269 TIndex idx); 275 TIndex idx); 285 TIndex idx); 291 TIndex idx); 317 TIndex idx); 330 static TIndex GetMapToIndex(ESeq_code_type from_type, [all …]
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objects/seq/ |
H A D | seqport_util.hpp | 56 typedef unsigned int TIndex; typedef in CSeqportUtil 57 typedef pair<TIndex, TIndex> TPair; 62 CBadIndex(TIndex idx, string method) in CBadIndex() 242 static const string& GetIupacaa3(TIndex ncbistdaa); 269 TIndex idx); 275 TIndex idx); 285 TIndex idx); 291 TIndex idx); 317 TIndex idx); 330 static TIndex GetMapToIndex(ESeq_code_type from_type, [all …]
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/index/ |
H A D | test_index_finder.cpp | 55 typedef TIndex_ TIndex; typedef in IndexFinderTest 56 typedef IndexTest<TIndex> TBase; 57 typedef Finder<TIndex> TFinder; 80 typedef typename TestFixture::TIndex TIndex; in SEQAN_TYPED_TEST() typedef 81 Finder<TIndex> finder; in SEQAN_TYPED_TEST() 87 typedef Index<std::string, IndexSa<> > TIndex; in SEQAN_TYPED_TEST() typedef 89 TIndex index(str); in SEQAN_TYPED_TEST() 90 Iterator<TIndex, TopDown<> >::Type iter(index); in SEQAN_TYPED_TEST() 95 typedef Index<std::vector<char>, IndexSa<> > TIndex; in SEQAN_TYPED_TEST() typedef 97 TIndex index(vec); in SEQAN_TYPED_TEST() [all …]
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