/dports/biology/seqan1/seqan-1.3.1/seqan/graph_types/ |
H A D | graph_impl_tree.h | 170 TIterConst it = begin(g.data_vertex, Standard()); in _rebuildParentMap() 171 TIterConst itEnd = end(g.data_vertex, Standard()); in _rebuildParentMap() 276 TIterConst it = begin(g.data_vertex, Standard()); in numEdges() 277 TIterConst itEnd = end(g.data_vertex, Standard()); in numEdges() 393 TIterConst it = begin(g.data_vertex, Standard()); in inDegree() 394 TIterConst itEnd = end(g.data_vertex, Standard()); in inDegree() 629 TIterConst it = begin(g.data_vertex, Standard()); in sourceVertex() 630 TIterConst itEnd = end(g.data_vertex, Standard()); in sourceVertex() 658 TIterConst it = begin(g.data_vertex, Standard()); in getAdjacencyMatrix() 659 TIterConst itEnd = end(g.data_vertex, Standard()); in getAdjacencyMatrix() [all …]
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H A D | graph_impl_directed.h | 158 typedef typename Iterator<String<TEdgeStump*> const, Standard>::Type TIterConst; in _copyGraph() typedef 165 TIterConst it = begin(source.data_vertex, Standard()); in _copyGraph() 166 TIterConst itEnd = end(source.data_vertex, Standard()); in _copyGraph() 443 TIterConst it = begin(g.data_vertex, Standard()); in inDegree() 444 TIterConst itEnd = end(g.data_vertex, Standard()); in inDegree() 852 TIterConst it = begin(g.data_vertex, Standard()); in sourceVertex() 853 TIterConst itEnd = end(g.data_vertex, Standard()); in sourceVertex() 895 TIterConst it = begin(g.data_vertex, Standard()); in getAdjacencyMatrix() 896 TIterConst itEnd = end(g.data_vertex, Standard()); in getAdjacencyMatrix() 971 TIterConst it = begin(g.data_vertex, Standard()); in write() [all …]
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H A D | graph_impl_automaton.h | 179 … typename Iterator<String<AutomatonEdgeArray<TEdge, TAlphabet> > const, Standard>::Type TIterConst; in _copyGraph() typedef 185 TIterConst it = begin(source.data_vertex, Standard()); in _copyGraph() 186 TIterConst itEnd = end(source.data_vertex, Standard()); in _copyGraph() 346 … typename Iterator<String<AutomatonEdgeArray<TEdge, TAlphabet> > const, Standard>::Type TIterConst; in inDegree() typedef 347 TIterConst it = begin(g.data_vertex, Standard()); in inDegree() 348 TIterConst itEnd = end(g.data_vertex, Standard()); in inDegree() 598 … typename Iterator<String<AutomatonEdgeArray<TEdge, TAlphabet> > const, Standard>::Type TIterConst; in getAdjacencyMatrix() typedef 599 TIterConst it = begin(g.data_vertex, Standard()); in getAdjacencyMatrix() 600 TIterConst itEnd = end(g.data_vertex, Standard()); in getAdjacencyMatrix() 662 TIterConst it = begin(g.data_vertex, Standard()); in write() [all …]
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H A D | graph_impl_undirected.h | 157 typedef typename Iterator<String<TEdgeStump*> const, Standard>::Type TIterConst; in _copyGraph() typedef 164 TIterConst it = begin(source.data_vertex, Standard()); in _copyGraph() 165 TIterConst itEnd = end(source.data_vertex, Standard()); in _copyGraph() 700 typedef typename Iterator<String<TEdgeStump*> const, Standard>::Type TIterConst; in getAdjacencyMatrix() typedef 701 TIterConst it = begin(g.data_vertex, Standard()); in getAdjacencyMatrix() 702 TIterConst itEnd = end(g.data_vertex, Standard()); in getAdjacencyMatrix() 764 typedef typename Iterator<String<TEdgeStump*> const, Standard>::Type TIterConst; in write() typedef 765 TIterConst it = begin(g.data_vertex, Standard()); in write() 766 TIterConst itEnd = end(g.data_vertex, Standard()); in write()
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H A D | graph_impl_wordgraph.h | 197 …ef typename Iterator<String<AutomatonEdgeArray<TEdge, TAlphabet> > const, Rooted>::Type TIterConst; in write() typedef 198 for(TIterConst it = begin(g.data_vertex);!atEnd(it);goNext(it)) { in write()
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H A D | graph_impl_hmm.h | 529 typedef typename Iterator<String<TEdgeStump*>, Standard>::Type TIterConst; in write() typedef 551 TIterConst it = begin(_getVertexString(g), Standard()); in write() 552 TIterConst itEnd = end(_getVertexString(g), Standard()); in write()
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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/graph_types/ |
H A D | graph_impl_directed.h | 208 TIterConst it = begin(source.data_vertex, Standard()); in _copyGraph() 465 TIterConst it = begin(g.data_vertex, Standard()); in inDegree() 466 TIterConst itEnd = end(g.data_vertex, Standard()); in inDegree() 843 TIterConst it = begin(g.data_vertex, Standard()); in sourceVertex() 844 TIterConst itEnd = end(g.data_vertex, Standard()); in sourceVertex() 875 TIterConst it = begin(g.data_vertex, Standard()); in getAdjacencyMatrix() 876 TIterConst itEnd = end(g.data_vertex, Standard()); in getAdjacencyMatrix() 915 TIterConst itIn = begin(g.data_vertex, Standard()); in _getVertexAdjacencyVector() 916 TIterConst itEndIn = end(g.data_vertex, Standard()); in _getVertexAdjacencyVector() 992 TIterConst it = begin(g.data_vertex, Standard()); in write() [all …]
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H A D | graph_impl_tree.h | 162 TIterConst it = begin(g.data_vertex, Standard()); in _rebuildParentMap() 163 TIterConst itEnd = end(g.data_vertex, Standard()); in _rebuildParentMap() 264 TIterConst it = begin(g.data_vertex, Standard()); in numEdges() 265 TIterConst itEnd = end(g.data_vertex, Standard()); in numEdges() 374 TIterConst it = begin(g.data_vertex, Standard()); in inDegree() 375 TIterConst itEnd = end(g.data_vertex, Standard()); in inDegree() 598 TIterConst it = begin(g.data_vertex, Standard()); in sourceVertex() 599 TIterConst itEnd = end(g.data_vertex, Standard()); in sourceVertex() 626 TIterConst it = begin(g.data_vertex, Standard()); in getAdjacencyMatrix() 627 TIterConst itEnd = end(g.data_vertex, Standard()); in getAdjacencyMatrix() [all …]
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H A D | graph_impl_automaton.h | 165 … typename Iterator<String<AutomatonEdgeArray<TEdge, TAlphabet> > const, Standard>::Type TIterConst; in _copyGraph() typedef 171 TIterConst it = begin(source.data_vertex, Standard()); in _copyGraph() 172 TIterConst itEnd = end(source.data_vertex, Standard()); in _copyGraph() 323 TIterConst it = begin(g.data_vertex, Standard()); in inDegree() 324 TIterConst itEnd = end(g.data_vertex, Standard()); in inDegree() 559 TIterConst it = begin(g.data_vertex, Standard()); in getAdjacencyMatrix() 560 TIterConst itEnd = end(g.data_vertex, Standard()); in getAdjacencyMatrix() 599 TIterConst itIn = begin(g.data_vertex, Standard()); in getVertexAdjacencyVector() 600 TIterConst itEndIn = end(g.data_vertex, Standard()); in getVertexAdjacencyVector() 672 TIterConst it = begin(g.data_vertex, Standard()); in write() [all …]
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H A D | graph_impl_undirected.h | 146 typedef typename Iterator<String<TEdgeStump*> const, Standard>::Type TIterConst; in _copyGraph() typedef 153 TIterConst it = begin(source.data_vertex, Standard()); in _copyGraph() 154 TIterConst itEnd = end(source.data_vertex, Standard()); in _copyGraph() 669 typedef typename Iterator<String<TEdgeStump*> const, Standard>::Type TIterConst; in getAdjacencyMatrix() typedef 670 TIterConst it = begin(g.data_vertex, Standard()); in getAdjacencyMatrix() 671 TIterConst itEnd = end(g.data_vertex, Standard()); in getAdjacencyMatrix() 780 typedef typename Iterator<String<TEdgeStump*> const, Standard>::Type TIterConst; in write() typedef 781 TIterConst it = begin(g.data_vertex, Standard()); in write() 782 TIterConst itEnd = end(g.data_vertex, Standard()); in write()
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H A D | graph_impl_wordgraph.h | 186 …ef typename Iterator<String<AutomatonEdgeArray<TEdge, TAlphabet> > const, Rooted>::Type TIterConst; in write() typedef 187 for(TIterConst it = begin(g.data_vertex);!atEnd(it);goNext(it)) { in write()
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H A D | graph_impl_hmm.h | 497 typedef typename Iterator<String<TEdgeStump*>, Standard>::Type TIterConst; in write() typedef 516 TIterConst it = begin(_getVertexString(g), Standard()); in write() 517 TIterConst itEnd = end(_getVertexString(g), Standard()); in write()
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/graph_types/ |
H A D | graph_impl_directed.h | 208 TIterConst it = begin(source.data_vertex, Standard()); in _copyGraph() 465 TIterConst it = begin(g.data_vertex, Standard()); in inDegree() 466 TIterConst itEnd = end(g.data_vertex, Standard()); in inDegree() 843 TIterConst it = begin(g.data_vertex, Standard()); in sourceVertex() 844 TIterConst itEnd = end(g.data_vertex, Standard()); in sourceVertex() 875 TIterConst it = begin(g.data_vertex, Standard()); in getAdjacencyMatrix() 876 TIterConst itEnd = end(g.data_vertex, Standard()); in getAdjacencyMatrix() 915 TIterConst itIn = begin(g.data_vertex, Standard()); in _getVertexAdjacencyVector() 916 TIterConst itEndIn = end(g.data_vertex, Standard()); in _getVertexAdjacencyVector() 992 TIterConst it = begin(g.data_vertex, Standard()); in write() [all …]
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H A D | graph_impl_tree.h | 162 TIterConst it = begin(g.data_vertex, Standard()); in _rebuildParentMap() 163 TIterConst itEnd = end(g.data_vertex, Standard()); in _rebuildParentMap() 264 TIterConst it = begin(g.data_vertex, Standard()); in numEdges() 265 TIterConst itEnd = end(g.data_vertex, Standard()); in numEdges() 374 TIterConst it = begin(g.data_vertex, Standard()); in inDegree() 375 TIterConst itEnd = end(g.data_vertex, Standard()); in inDegree() 598 TIterConst it = begin(g.data_vertex, Standard()); in sourceVertex() 599 TIterConst itEnd = end(g.data_vertex, Standard()); in sourceVertex() 626 TIterConst it = begin(g.data_vertex, Standard()); in getAdjacencyMatrix() 627 TIterConst itEnd = end(g.data_vertex, Standard()); in getAdjacencyMatrix() [all …]
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H A D | graph_impl_automaton.h | 165 … typename Iterator<String<AutomatonEdgeArray<TEdge, TAlphabet> > const, Standard>::Type TIterConst; in _copyGraph() typedef 171 TIterConst it = begin(source.data_vertex, Standard()); in _copyGraph() 172 TIterConst itEnd = end(source.data_vertex, Standard()); in _copyGraph() 323 TIterConst it = begin(g.data_vertex, Standard()); in inDegree() 324 TIterConst itEnd = end(g.data_vertex, Standard()); in inDegree() 559 TIterConst it = begin(g.data_vertex, Standard()); in getAdjacencyMatrix() 560 TIterConst itEnd = end(g.data_vertex, Standard()); in getAdjacencyMatrix() 599 TIterConst itIn = begin(g.data_vertex, Standard()); in getVertexAdjacencyVector() 600 TIterConst itEndIn = end(g.data_vertex, Standard()); in getVertexAdjacencyVector() 672 TIterConst it = begin(g.data_vertex, Standard()); in write() [all …]
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H A D | graph_impl_undirected.h | 146 typedef typename Iterator<String<TEdgeStump*> const, Standard>::Type TIterConst; in _copyGraph() typedef 153 TIterConst it = begin(source.data_vertex, Standard()); in _copyGraph() 154 TIterConst itEnd = end(source.data_vertex, Standard()); in _copyGraph() 669 typedef typename Iterator<String<TEdgeStump*> const, Standard>::Type TIterConst; in getAdjacencyMatrix() typedef 670 TIterConst it = begin(g.data_vertex, Standard()); in getAdjacencyMatrix() 671 TIterConst itEnd = end(g.data_vertex, Standard()); in getAdjacencyMatrix() 780 typedef typename Iterator<String<TEdgeStump*> const, Standard>::Type TIterConst; in write() typedef 781 TIterConst it = begin(g.data_vertex, Standard()); in write() 782 TIterConst itEnd = end(g.data_vertex, Standard()); in write()
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H A D | graph_impl_wordgraph.h | 186 …ef typename Iterator<String<AutomatonEdgeArray<TEdge, TAlphabet> > const, Rooted>::Type TIterConst; in write() typedef 187 for(TIterConst it = begin(g.data_vertex);!atEnd(it);goNext(it)) { in write()
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H A D | graph_impl_hmm.h | 497 typedef typename Iterator<String<TEdgeStump*>, Standard>::Type TIterConst; in write() typedef 516 TIterConst it = begin(_getVertexString(g), Standard()); in write() 517 TIterConst itEnd = end(_getVertexString(g), Standard()); in write()
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/graph_types/ |
H A D | graph_impl_tree.h | 168 TIterConst it = begin(g.data_vertex, Standard()); in _rebuildParentMap() 169 TIterConst itEnd = end(g.data_vertex, Standard()); in _rebuildParentMap() 274 TIterConst it = begin(g.data_vertex, Standard()); in numEdges() 275 TIterConst itEnd = end(g.data_vertex, Standard()); in numEdges() 391 TIterConst it = begin(g.data_vertex, Standard()); in inDegree() 392 TIterConst itEnd = end(g.data_vertex, Standard()); in inDegree() 625 TIterConst it = begin(g.data_vertex, Standard()); in sourceVertex() 626 TIterConst itEnd = end(g.data_vertex, Standard()); in sourceVertex() 654 TIterConst it = begin(g.data_vertex, Standard()); in getAdjacencyMatrix() 655 TIterConst itEnd = end(g.data_vertex, Standard()); in getAdjacencyMatrix() [all …]
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H A D | graph_impl_directed.h | 156 typedef typename Iterator<String<TEdgeStump*> const, Standard>::Type TIterConst; in _copyGraph() typedef 163 TIterConst it = begin(source.data_vertex, Standard()); in _copyGraph() 164 TIterConst itEnd = end(source.data_vertex, Standard()); in _copyGraph() 333 TIterConst it = begin(g.data_vertex, Standard()); in inDegree() 334 TIterConst itEnd = end(g.data_vertex, Standard()); in inDegree() 579 TIterConst it = begin(g.data_vertex, Standard()); in sourceVertex() 580 TIterConst itEnd = end(g.data_vertex, Standard()); in sourceVertex() 609 TIterConst it = begin(g.data_vertex, Standard()); in getAdjacencyMatrix() 610 TIterConst itEnd = end(g.data_vertex, Standard()); in getAdjacencyMatrix() 662 TIterConst it = begin(g.data_vertex, Standard()); in write() [all …]
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H A D | graph_impl_automaton.h | 172 … typename Iterator<String<AutomatonEdgeArray<TEdge, TAlphabet> > const, Standard>::Type TIterConst; in _copyGraph() typedef 178 TIterConst it = begin(source.data_vertex, Standard()); in _copyGraph() 179 TIterConst itEnd = end(source.data_vertex, Standard()); in _copyGraph() 339 … typename Iterator<String<AutomatonEdgeArray<TEdge, TAlphabet> > const, Standard>::Type TIterConst; in inDegree() typedef 340 TIterConst it = begin(g.data_vertex, Standard()); in inDegree() 341 TIterConst itEnd = end(g.data_vertex, Standard()); in inDegree() 584 … typename Iterator<String<AutomatonEdgeArray<TEdge, TAlphabet> > const, Standard>::Type TIterConst; in getAdjacencyMatrix() typedef 585 TIterConst it = begin(g.data_vertex, Standard()); in getAdjacencyMatrix() 586 TIterConst itEnd = end(g.data_vertex, Standard()); in getAdjacencyMatrix() 645 TIterConst it = begin(g.data_vertex, Standard()); in write() [all …]
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H A D | graph_impl_undirected.h | 154 typedef typename Iterator<String<TEdgeStump*> const, Standard>::Type TIterConst; in _copyGraph() typedef 161 TIterConst it = begin(source.data_vertex, Standard()); in _copyGraph() 162 TIterConst itEnd = end(source.data_vertex, Standard()); in _copyGraph() 697 typedef typename Iterator<String<TEdgeStump*> const, Standard>::Type TIterConst; in getAdjacencyMatrix() typedef 698 TIterConst it = begin(g.data_vertex, Standard()); in getAdjacencyMatrix() 699 TIterConst itEnd = end(g.data_vertex, Standard()); in getAdjacencyMatrix() 760 typedef typename Iterator<String<TEdgeStump*> const, Standard>::Type TIterConst; in write() typedef 761 TIterConst it = begin(g.data_vertex, Standard()); in write() 762 TIterConst itEnd = end(g.data_vertex, Standard()); in write()
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H A D | graph_impl_wordgraph.h | 193 …ef typename Iterator<String<AutomatonEdgeArray<TEdge, TAlphabet> > const, Rooted>::Type TIterConst; in write() typedef 194 for(TIterConst it = begin(g.data_vertex);!atEnd(it);goNext(it)) { in write()
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H A D | graph_impl_hmm.h | 512 typedef typename Iterator<String<TEdgeStump*>, Standard>::Type TIterConst; in write() typedef 531 TIterConst it = begin(_getVertexString(g), Standard()); in write() 532 TIterConst itEnd = end(_getVertexString(g), Standard()); in write()
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/dports/biology/seqan1/seqan-1.3.1/seqan/refinement/ |
H A D | graph_impl_align.h | 716 typedef typename Iterator<String<TEdgeStump*> const, Standard>::Type TIterConst; 721 TIterConst it = begin(g.data_align.data_vertex, Standard()); 722 TIterConst itEnd = end(g.data_align.data_vertex, Standard()); 968 typedef typename Iterator<String<TEdgeStump*> const, Rooted>::Type TIterConst; 1018 for(TIterConst it = begin(g.data_align.data_vertex);!atEnd(it);goNext(it)) {
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