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Searched refs:TPStops (Results 1 – 8 of 8) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/
H A Dannot.cpp691 CCDSInfo::TPStops pstops = cds_info.PStops(); in Predict()
693 ITERATE(CCDSInfo::TPStops, ps, pstops) { in Predict()
708 ITERATE(CCDSInfo::TPStops, stp, it->GetCdsInfo().PStops()) { in Predict()
H A Dgnomon_model.cpp318 ITERATE(TPStops, i, PStops()) { in MapFromEditedToOrig()
355 ITERATE(TPStops, i, PStops()) { in MapFromOrigToEdited()
480 NON_CONST_ITERATE(TPStops, s, m_p_stops) { in Remap()
579 for(TPStops::iterator s = m_p_stops.begin(); s != m_p_stops.end(); ) { in Clip()
631 ERASE_ITERATE(TPStops, s, m_p_stops) { in Cut()
656 ITERATE(TPStops, stp, m_p_stops) { in PStop()
1802 ITERATE(CCDSInfo::TPStops, s, cds_info.PStops()) { in CollectAttributes()
H A Dgnomon_objmgr.cpp511 ITERATE(CCDSInfo::TPStops, stp, cds_info.PStops()) { in GetProtein()
539 ITERATE(CCDSInfo::TPStops, stp, cds_info.PStops()) { in GetProtein()
H A Dscore.cpp1407 CCDSInfo::TPStops pstops = cds_info.PStops(); in GetScore()
1411 CCDSInfo::TPStops::iterator it = find(pstops.begin(), pstops.end(), pstop); in GetScore()
1561 CCDSInfo::TPStops::iterator it = find(pstops.begin(), pstops.end(), pstop); in GetScore()
H A Dchainer.cpp2101 ITERATE(CCDSInfo::TPStops, s, algn.GetCdsInfo().PStops()) { in ReplicatePStops()
2135 CCDSInfo::TPStops pstops = cds.PStops(); in ReplicatePStops()
2136 NON_CONST_ITERATE(CCDSInfo::TPStops, s, pstops) { in ReplicatePStops()
2151 ITERATE(CCDSInfo::TPStops, s, pstops) in ReplicatePStops()
4057 CCDSInfo::TPStops istops = itt->GetCdsInfo().PStops(); in CombineCompatibleChains()
4076 ITERATE(CCDSInfo::TPStops, istp, istops) { in CombineCompatibleChains()
4807 CCDSInfo::TPStops pstops = cds.PStops(); in RestoreReasonableConfirmedStart()
4816 ITERATE(CCDSInfo::TPStops, s, pstops) { in RestoreReasonableConfirmedStart()
4902 CCDSInfo::TPStops pstops; in ClipChain()
6310 NON_CONST_ITERATE(CCDSInfo::TPStops, stp, pstops) { in FindSelenoproteinsClipProteinsToStartStop()
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H A Dparse.cpp696 ITERATE(CCDSInfo::TPStops,s,gene.GetCdsInfo().PStops()) in GetGenes()
H A Dasn1.cpp292 ITERATE(CCDSInfo::TPStops,s,cds.PStops()) { in create_cdregion_feature()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/
H A Dgnomon_model.hpp281 typedef vector<SPStop> TPStops; typedef in CCDSInfo
282 const TPStops& PStops() const { return m_p_stops; } in PStops()
348 TPStops m_p_stops;