Searched refs:TPStops (Results 1 – 8 of 8) sorted by relevance
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/ |
H A D | annot.cpp | 691 CCDSInfo::TPStops pstops = cds_info.PStops(); in Predict() 693 ITERATE(CCDSInfo::TPStops, ps, pstops) { in Predict() 708 ITERATE(CCDSInfo::TPStops, stp, it->GetCdsInfo().PStops()) { in Predict()
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H A D | gnomon_model.cpp | 318 ITERATE(TPStops, i, PStops()) { in MapFromEditedToOrig() 355 ITERATE(TPStops, i, PStops()) { in MapFromOrigToEdited() 480 NON_CONST_ITERATE(TPStops, s, m_p_stops) { in Remap() 579 for(TPStops::iterator s = m_p_stops.begin(); s != m_p_stops.end(); ) { in Clip() 631 ERASE_ITERATE(TPStops, s, m_p_stops) { in Cut() 656 ITERATE(TPStops, stp, m_p_stops) { in PStop() 1802 ITERATE(CCDSInfo::TPStops, s, cds_info.PStops()) { in CollectAttributes()
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H A D | gnomon_objmgr.cpp | 511 ITERATE(CCDSInfo::TPStops, stp, cds_info.PStops()) { in GetProtein() 539 ITERATE(CCDSInfo::TPStops, stp, cds_info.PStops()) { in GetProtein()
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H A D | score.cpp | 1407 CCDSInfo::TPStops pstops = cds_info.PStops(); in GetScore() 1411 CCDSInfo::TPStops::iterator it = find(pstops.begin(), pstops.end(), pstop); in GetScore() 1561 CCDSInfo::TPStops::iterator it = find(pstops.begin(), pstops.end(), pstop); in GetScore()
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H A D | chainer.cpp | 2101 ITERATE(CCDSInfo::TPStops, s, algn.GetCdsInfo().PStops()) { in ReplicatePStops() 2135 CCDSInfo::TPStops pstops = cds.PStops(); in ReplicatePStops() 2136 NON_CONST_ITERATE(CCDSInfo::TPStops, s, pstops) { in ReplicatePStops() 2151 ITERATE(CCDSInfo::TPStops, s, pstops) in ReplicatePStops() 4057 CCDSInfo::TPStops istops = itt->GetCdsInfo().PStops(); in CombineCompatibleChains() 4076 ITERATE(CCDSInfo::TPStops, istp, istops) { in CombineCompatibleChains() 4807 CCDSInfo::TPStops pstops = cds.PStops(); in RestoreReasonableConfirmedStart() 4816 ITERATE(CCDSInfo::TPStops, s, pstops) { in RestoreReasonableConfirmedStart() 4902 CCDSInfo::TPStops pstops; in ClipChain() 6310 NON_CONST_ITERATE(CCDSInfo::TPStops, stp, pstops) { in FindSelenoproteinsClipProteinsToStartStop() [all …]
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H A D | parse.cpp | 696 ITERATE(CCDSInfo::TPStops,s,gene.GetCdsInfo().PStops()) in GetGenes()
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H A D | asn1.cpp | 292 ITERATE(CCDSInfo::TPStops,s,cds.PStops()) { in create_cdregion_feature()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/ |
H A D | gnomon_model.hpp | 281 typedef vector<SPStop> TPStops; typedef in CCDSInfo 282 const TPStops& PStops() const { return m_p_stops; } in PStops() 348 TPStops m_p_stops;
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