TSignedPosition (reference) in projects: dports

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Searched refs:TSignedPosition (Results 1 – 6 of 6) sorted by relevance

/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/seeds/
H A D	banded_chain_alignment_impl.h	757 …_max(0,static_cast<TSignedPosition>(bandExtension) - static_cast<TSignedPosition>(beginPositionV(s… in _initializeBandedChain() 758 …_min(0, static_cast<TSignedPosition>(beginPositionH(seed)) + 1 - static_cast<TSignedPosition>(band… in _initializeBandedChain() 762 …_max(0,static_cast<TSignedPosition>(bandExtension) - static_cast<TSignedPosition>(beginPositionH(s… in _initializeBandedChain() 763 …_min(0, static_cast<TSignedPosition>(beginPositionV(seed)) + 1 - static_cast<TSignedPosition>(band… in _initializeBandedChain() 814 … static_cast<TSignedPosition>(bandExtension) - static_cast<TSignedPosition>(horizontalBandShift) - in _initializeBandedChain() 818 … static_cast<TSignedPosition>(bandExtension) - static_cast<TSignedPosition>(verticalBandShift) - in _initializeBandedChain() 1051 static_cast<TSignedPosition>(bandExtension) - static_cast<TSignedPosition>(gridBegin.i1)); in _finishBandedChain() 1053 static_cast<TSignedPosition>(bandExtension) - static_cast<TSignedPosition>(gridBegin.i2)); in _finishBandedChain() 1105 …static_cast<TSignedPosition>(endPositionH(currentSeed)) - static_cast<TSignedPosition>(bandExtensi… in _finishBandedChain() 1110 …static_cast<TSignedPosition>(endPositionV(currentSeed)) - static_cast<TSignedPosition>(bandExtensi… in _finishBandedChain() [all …]
H A D	banded_chain_alignment_traceback.h	`255 typedef typename MakeSigned<TPosition>::Type TSignedPosition; 304 …TSignedPosition horizontalInitPos = static_cast<TSignedPosition>(tracebackCoordinator._currColumn)… 305 … static_cast<TSignedPosition>(tracebackCoordinator._endColumn); 306 TSignedPosition verticalInitPos = static_cast<TSignedPosition>(tracebackCoordinator._currRow) - 307 static_cast<TSignedPosition>(tracebackCoordinator._endRow);`
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/seeds/
H A D	banded_chain_alignment_impl.h	845 …_max(0,static_cast<TSignedPosition>(bandExtension) - static_cast<TSignedPosition>(beginPositionV(s… in _initializeBandedChain() 846 …_min(0, static_cast<TSignedPosition>(beginPositionH(seed)) + 1 - static_cast<TSignedPosition>(band… in _initializeBandedChain() 850 …_max(0,static_cast<TSignedPosition>(bandExtension) - static_cast<TSignedPosition>(beginPositionH(s… in _initializeBandedChain() 851 …_min(0, static_cast<TSignedPosition>(beginPositionV(seed)) + 1 - static_cast<TSignedPosition>(band… in _initializeBandedChain() 903 … static_cast<TSignedPosition>(bandExtension) - static_cast<TSignedPosition>(horizontalBandShift) - in _initializeBandedChain() 907 … static_cast<TSignedPosition>(bandExtension) - static_cast<TSignedPosition>(verticalBandShift) - in _initializeBandedChain() 1145 static_cast<TSignedPosition>(bandExtension) - static_cast<TSignedPosition>(gridBegin.i1)); in _finishBandedChain() 1147 static_cast<TSignedPosition>(bandExtension) - static_cast<TSignedPosition>(gridBegin.i2)); in _finishBandedChain() 1199 …static_cast<TSignedPosition>(endPositionH(currentSeed)) - static_cast<TSignedPosition>(bandExtensi… in _finishBandedChain() 1204 …static_cast<TSignedPosition>(endPositionV(currentSeed)) - static_cast<TSignedPosition>(bandExtensi… in _finishBandedChain() [all …]
H A D	banded_chain_alignment_traceback.h	`255 typedef typename MakeSigned<TPosition>::Type TSignedPosition; 304 …TSignedPosition horizontalInitPos = static_cast<TSignedPosition>(tracebackCoordinator._currColumn)… 305 … static_cast<TSignedPosition>(tracebackCoordinator._endColumn); 306 TSignedPosition verticalInitPos = static_cast<TSignedPosition>(tracebackCoordinator._currRow) - 307 static_cast<TSignedPosition>(tracebackCoordinator._endRow);`
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/seeds/
H A D	banded_chain_alignment_impl.h	845 …_max(0,static_cast<TSignedPosition>(bandExtension) - static_cast<TSignedPosition>(beginPositionV(s… in _initializeBandedChain() 846 …_min(0, static_cast<TSignedPosition>(beginPositionH(seed)) + 1 - static_cast<TSignedPosition>(band… in _initializeBandedChain() 850 …_max(0,static_cast<TSignedPosition>(bandExtension) - static_cast<TSignedPosition>(beginPositionH(s… in _initializeBandedChain() 851 …_min(0, static_cast<TSignedPosition>(beginPositionV(seed)) + 1 - static_cast<TSignedPosition>(band… in _initializeBandedChain() 903 … static_cast<TSignedPosition>(bandExtension) - static_cast<TSignedPosition>(horizontalBandShift) - in _initializeBandedChain() 907 … static_cast<TSignedPosition>(bandExtension) - static_cast<TSignedPosition>(verticalBandShift) - in _initializeBandedChain() 1145 static_cast<TSignedPosition>(bandExtension) - static_cast<TSignedPosition>(gridBegin.i1)); in _finishBandedChain() 1147 static_cast<TSignedPosition>(bandExtension) - static_cast<TSignedPosition>(gridBegin.i2)); in _finishBandedChain() 1199 …static_cast<TSignedPosition>(endPositionH(currentSeed)) - static_cast<TSignedPosition>(bandExtensi… in _finishBandedChain() 1204 …static_cast<TSignedPosition>(endPositionV(currentSeed)) - static_cast<TSignedPosition>(bandExtensi… in _finishBandedChain() [all …]
H A D	banded_chain_alignment_traceback.h	`255 typedef typename MakeSigned<TPosition>::Type TSignedPosition; 304 …TSignedPosition horizontalInitPos = static_cast<TSignedPosition>(tracebackCoordinator._currColumn)… 305 … static_cast<TSignedPosition>(tracebackCoordinator._endColumn); 306 TSignedPosition verticalInitPos = static_cast<TSignedPosition>(tracebackCoordinator._currRow) - 307 static_cast<TSignedPosition>(tracebackCoordinator._endRow);`