/dports/biology/seqan/seqan-library-2.4.0/include/seqan/align_extend/ |
H A D | align_extend_base.h | 89 template <typename TSpec, typename TGapCosts, typename TTraceback, typename TExecPolicy, 92 TTraceback, TExecPolicy>, 119 template <typename TSpec, typename TGapCosts, typename TTraceback, typename TExecPolicy, 122 TTraceback, TExecPolicy>, 148 template <typename TSpec, typename TGapCosts, typename TTraceback, typename TExecPolicy, 151 TTraceback, TExecPolicy>, 176 template <typename TSpec, typename TGapCosts, typename TTraceback, typename TExecPolicy, 179 TTraceback, TExecPolicy>,
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H A D | dp_scout_xdrop.h | 171 typename TCellDescriptor, typename TTraceback> 185 TTraceback> const &) 187 typedef DPProfile_<AlignExtend_<XDrop_<TScoreValue> >, TGapCosts, TTraceback> TDPProfile;
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align_extend/ |
H A D | align_extend_base.h | 89 template <typename TSpec, typename TGapCosts, typename TTraceback, typename TExecPolicy, 92 TTraceback, TExecPolicy>, 119 template <typename TSpec, typename TGapCosts, typename TTraceback, typename TExecPolicy, 122 TTraceback, TExecPolicy>, 148 template <typename TSpec, typename TGapCosts, typename TTraceback, typename TExecPolicy, 151 TTraceback, TExecPolicy>, 176 template <typename TSpec, typename TGapCosts, typename TTraceback, typename TExecPolicy, 179 TTraceback, TExecPolicy>,
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H A D | dp_scout_xdrop.h | 171 typename TCellDescriptor, typename TTraceback> 185 TTraceback> const &) 187 typedef DPProfile_<AlignExtend_<XDrop_<TScoreValue> >, TGapCosts, TTraceback> TDPProfile;
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align_extend/ |
H A D | align_extend_base.h | 89 template <typename TSpec, typename TGapCosts, typename TTraceback, 92 TTraceback>, 119 template <typename TSpec, typename TGapCosts, typename TTraceback, 122 TTraceback>, 148 template <typename TSpec, typename TGapCosts, typename TTraceback, 151 TTraceback>, 176 template <typename TSpec, typename TGapCosts, typename TTraceback, 179 TTraceback>,
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H A D | dp_scout_xdrop.h | 169 typename TCellDescriptor, typename TTraceback> 183 TTraceback> const &) 185 typedef DPProfile_<AlignExtend_<XDrop_<TScoreValue> >, TGapCosts, TTraceback> TDPProfile;
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/seeds/ |
H A D | banded_chain_alignment_profile.h | 88 …TFreeEndGaps, typename TDPMatrixLocation, typename TGapCosts, typename TTraceback, typename TExecP… 90 …ofile_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback, TExecPolicy>, 110 …TFreeEndGaps, typename TDPMatrixLocation, typename TGapCosts, typename TTraceback, typename TExecP… 112 …ofile_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback, TExecPolicy>, 132 …TFreeEndGaps, typename TDPMatrixLocation, typename TGapCosts, typename TTraceback, typename TExecP… 134 …ofile_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback, TExecPolicy>, 154 …TFreeEndGaps, typename TDPMatrixLocation, typename TGapCosts, typename TTraceback, typename TExecP… 156 …ofile_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback, TExecPolicy>,
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H A D | banded_chain_alignment_impl.h | 748 typename TDPMatrixLocation, typename TGapCosts, typename TTraceback, typename TExecPolicy> 754 …le_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback, TExecPolicy> co… in _initiaizeBeginningOfBandedChain() argument 758 …le_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback, TExecPolicy> TD… in _initiaizeBeginningOfBandedChain()
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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/seeds/ |
H A D | banded_chain_alignment_profile.h | 88 …TFreeEndGaps, typename TDPMatrixLocation, typename TGapCosts, typename TTraceback, typename TExecP… 90 …ofile_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback, TExecPolicy>, 110 …TFreeEndGaps, typename TDPMatrixLocation, typename TGapCosts, typename TTraceback, typename TExecP… 112 …ofile_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback, TExecPolicy>, 132 …TFreeEndGaps, typename TDPMatrixLocation, typename TGapCosts, typename TTraceback, typename TExecP… 134 …ofile_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback, TExecPolicy>, 154 …TFreeEndGaps, typename TDPMatrixLocation, typename TGapCosts, typename TTraceback, typename TExecP… 156 …ofile_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback, TExecPolicy>,
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H A D | banded_chain_alignment_impl.h | 748 typename TDPMatrixLocation, typename TGapCosts, typename TTraceback, typename TExecPolicy> 754 …le_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback, TExecPolicy> co… in _initiaizeBeginningOfBandedChain() argument 758 …le_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback, TExecPolicy> TD… in _initiaizeBeginningOfBandedChain()
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/seeds/ |
H A D | banded_chain_alignment_profile.h | 88 …TFreeEndGaps, typename TDPMatrixLocation, typename TGapCosts, typename TTraceback, typename TColum… 89 …aColumn_<DPProfile_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback>, 109 …TFreeEndGaps, typename TDPMatrixLocation, typename TGapCosts, typename TTraceback, typename TColum… 110 …aColumn_<DPProfile_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback>, 130 …TFreeEndGaps, typename TDPMatrixLocation, typename TGapCosts, typename TTraceback, typename TColum… 131 …aColumn_<DPProfile_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback>, 151 …TFreeEndGaps, typename TDPMatrixLocation, typename TGapCosts, typename TTraceback, typename TColum… 152 …aColumn_<DPProfile_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback>,
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H A D | banded_chain_alignment_impl.h | 667 typename TDPMatrixLocation, typename TGapCosts, typename TTraceback> 673 … DPProfile_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback> const &) in _initiaizeBeginningOfBandedChain() 677 …Profile_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback> TDPProfile; in _initiaizeBeginningOfBandedChain()
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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/align/ |
H A D | dp_profile.h | 342 template <typename TAlignment, typename TGapCosts, typename TTraceback, typename TExecPolicy = Seri… 409 template <typename TAlignment, typename TGapCosts, typename TTraceback, typename TExecPolicy> 410 struct DPProfileType<DPProfile_<TAlignment, TGapCosts, TTraceback, TExecPolicy>, DPProfileTypeId::A… 415 template <typename TAlignment, typename TGapCosts, typename TTraceback, typename TExecPolicy> 416 struct DPProfileType<DPProfile_<TAlignment, TGapCosts, TTraceback, TExecPolicy>, DPProfileTypeId::G… 421 template <typename TAlignment, typename TGapCosts, typename TTraceback, typename TExecPolicy> 422 struct DPProfileType<DPProfile_<TAlignment, TGapCosts, TTraceback, TExecPolicy>, DPProfileTypeId::T… 424 using Type = TTraceback; 427 template <typename TAlignment, typename TGapCosts, typename TTraceback, typename TExecPolicy> 428 struct DPProfileType<DPProfile_<TAlignment, TGapCosts, TTraceback, TExecPolicy>, DPProfileTypeId::E…
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H A D | dp_align_simd_helper.h | 228 typename TAlgo, typename TBand, typename TFreeEndGaps, typename TTraceback, 236 … AlignConfig2<TAlgo, TBand, TFreeEndGaps, TTraceback> const & alignConfig, in _prepareAndRunSimdAlignment() 259 …ing TDPProfile = typename SetupAlignmentProfile_<TAlgo, TFreeEndGaps, TGapModel, TTraceback>::Type; in _prepareAndRunSimdAlignment()
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align/ |
H A D | dp_profile.h | 342 template <typename TAlignment, typename TGapCosts, typename TTraceback, typename TExecPolicy = Seri… 409 template <typename TAlignment, typename TGapCosts, typename TTraceback, typename TExecPolicy> 410 struct DPProfileType<DPProfile_<TAlignment, TGapCosts, TTraceback, TExecPolicy>, DPProfileTypeId::A… 415 template <typename TAlignment, typename TGapCosts, typename TTraceback, typename TExecPolicy> 416 struct DPProfileType<DPProfile_<TAlignment, TGapCosts, TTraceback, TExecPolicy>, DPProfileTypeId::G… 421 template <typename TAlignment, typename TGapCosts, typename TTraceback, typename TExecPolicy> 422 struct DPProfileType<DPProfile_<TAlignment, TGapCosts, TTraceback, TExecPolicy>, DPProfileTypeId::T… 424 using Type = TTraceback; 427 template <typename TAlignment, typename TGapCosts, typename TTraceback, typename TExecPolicy> 428 struct DPProfileType<DPProfile_<TAlignment, TGapCosts, TTraceback, TExecPolicy>, DPProfileTypeId::E…
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H A D | dp_align_simd_helper.h | 228 typename TAlgo, typename TBand, typename TFreeEndGaps, typename TTraceback, 236 … AlignConfig2<TAlgo, TBand, TFreeEndGaps, TTraceback> const & alignConfig, in _prepareAndRunSimdAlignment() 259 …ing TDPProfile = typename SetupAlignmentProfile_<TAlgo, TFreeEndGaps, TGapModel, TTraceback>::Type; in _prepareAndRunSimdAlignment()
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align/ |
H A D | dp_profile.h | 221 template <typename TAlignment, typename TGapCosts, typename TTraceback>
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