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Searched refs:TTraceback (Results 1 – 17 of 17) sorted by relevance

/dports/biology/seqan/seqan-library-2.4.0/include/seqan/align_extend/
H A Dalign_extend_base.h89 template <typename TSpec, typename TGapCosts, typename TTraceback, typename TExecPolicy,
92 TTraceback, TExecPolicy>,
119 template <typename TSpec, typename TGapCosts, typename TTraceback, typename TExecPolicy,
122 TTraceback, TExecPolicy>,
148 template <typename TSpec, typename TGapCosts, typename TTraceback, typename TExecPolicy,
151 TTraceback, TExecPolicy>,
176 template <typename TSpec, typename TGapCosts, typename TTraceback, typename TExecPolicy,
179 TTraceback, TExecPolicy>,
H A Ddp_scout_xdrop.h171 typename TCellDescriptor, typename TTraceback>
185 TTraceback> const &)
187 typedef DPProfile_<AlignExtend_<XDrop_<TScoreValue> >, TGapCosts, TTraceback> TDPProfile;
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align_extend/
H A Dalign_extend_base.h89 template <typename TSpec, typename TGapCosts, typename TTraceback, typename TExecPolicy,
92 TTraceback, TExecPolicy>,
119 template <typename TSpec, typename TGapCosts, typename TTraceback, typename TExecPolicy,
122 TTraceback, TExecPolicy>,
148 template <typename TSpec, typename TGapCosts, typename TTraceback, typename TExecPolicy,
151 TTraceback, TExecPolicy>,
176 template <typename TSpec, typename TGapCosts, typename TTraceback, typename TExecPolicy,
179 TTraceback, TExecPolicy>,
H A Ddp_scout_xdrop.h171 typename TCellDescriptor, typename TTraceback>
185 TTraceback> const &)
187 typedef DPProfile_<AlignExtend_<XDrop_<TScoreValue> >, TGapCosts, TTraceback> TDPProfile;
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align_extend/
H A Dalign_extend_base.h89 template <typename TSpec, typename TGapCosts, typename TTraceback,
92 TTraceback>,
119 template <typename TSpec, typename TGapCosts, typename TTraceback,
122 TTraceback>,
148 template <typename TSpec, typename TGapCosts, typename TTraceback,
151 TTraceback>,
176 template <typename TSpec, typename TGapCosts, typename TTraceback,
179 TTraceback>,
H A Ddp_scout_xdrop.h169 typename TCellDescriptor, typename TTraceback>
183 TTraceback> const &)
185 typedef DPProfile_<AlignExtend_<XDrop_<TScoreValue> >, TGapCosts, TTraceback> TDPProfile;
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/seeds/
H A Dbanded_chain_alignment_profile.h88 …TFreeEndGaps, typename TDPMatrixLocation, typename TGapCosts, typename TTraceback, typename TExecP…
90 …ofile_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback, TExecPolicy>,
110 …TFreeEndGaps, typename TDPMatrixLocation, typename TGapCosts, typename TTraceback, typename TExecP…
112 …ofile_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback, TExecPolicy>,
132 …TFreeEndGaps, typename TDPMatrixLocation, typename TGapCosts, typename TTraceback, typename TExecP…
134 …ofile_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback, TExecPolicy>,
154 …TFreeEndGaps, typename TDPMatrixLocation, typename TGapCosts, typename TTraceback, typename TExecP…
156 …ofile_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback, TExecPolicy>,
H A Dbanded_chain_alignment_impl.h748 typename TDPMatrixLocation, typename TGapCosts, typename TTraceback, typename TExecPolicy>
754 …le_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback, TExecPolicy> co… in _initiaizeBeginningOfBandedChain() argument
758 …le_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback, TExecPolicy> TD… in _initiaizeBeginningOfBandedChain()
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/seeds/
H A Dbanded_chain_alignment_profile.h88 …TFreeEndGaps, typename TDPMatrixLocation, typename TGapCosts, typename TTraceback, typename TExecP…
90 …ofile_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback, TExecPolicy>,
110 …TFreeEndGaps, typename TDPMatrixLocation, typename TGapCosts, typename TTraceback, typename TExecP…
112 …ofile_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback, TExecPolicy>,
132 …TFreeEndGaps, typename TDPMatrixLocation, typename TGapCosts, typename TTraceback, typename TExecP…
134 …ofile_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback, TExecPolicy>,
154 …TFreeEndGaps, typename TDPMatrixLocation, typename TGapCosts, typename TTraceback, typename TExecP…
156 …ofile_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback, TExecPolicy>,
H A Dbanded_chain_alignment_impl.h748 typename TDPMatrixLocation, typename TGapCosts, typename TTraceback, typename TExecPolicy>
754 …le_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback, TExecPolicy> co… in _initiaizeBeginningOfBandedChain() argument
758 …le_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback, TExecPolicy> TD… in _initiaizeBeginningOfBandedChain()
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/seeds/
H A Dbanded_chain_alignment_profile.h88 …TFreeEndGaps, typename TDPMatrixLocation, typename TGapCosts, typename TTraceback, typename TColum…
89 …aColumn_<DPProfile_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback>,
109 …TFreeEndGaps, typename TDPMatrixLocation, typename TGapCosts, typename TTraceback, typename TColum…
110 …aColumn_<DPProfile_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback>,
130 …TFreeEndGaps, typename TDPMatrixLocation, typename TGapCosts, typename TTraceback, typename TColum…
131 …aColumn_<DPProfile_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback>,
151 …TFreeEndGaps, typename TDPMatrixLocation, typename TGapCosts, typename TTraceback, typename TColum…
152 …aColumn_<DPProfile_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback>,
H A Dbanded_chain_alignment_impl.h667 typename TDPMatrixLocation, typename TGapCosts, typename TTraceback>
673 … DPProfile_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback> const &) in _initiaizeBeginningOfBandedChain()
677 …Profile_<BandedChainAlignment_<TFreeEndGaps, TDPMatrixLocation>, TGapCosts, TTraceback> TDPProfile; in _initiaizeBeginningOfBandedChain()
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/align/
H A Ddp_profile.h342 template <typename TAlignment, typename TGapCosts, typename TTraceback, typename TExecPolicy = Seri…
409 template <typename TAlignment, typename TGapCosts, typename TTraceback, typename TExecPolicy>
410 struct DPProfileType<DPProfile_<TAlignment, TGapCosts, TTraceback, TExecPolicy>, DPProfileTypeId::A…
415 template <typename TAlignment, typename TGapCosts, typename TTraceback, typename TExecPolicy>
416 struct DPProfileType<DPProfile_<TAlignment, TGapCosts, TTraceback, TExecPolicy>, DPProfileTypeId::G…
421 template <typename TAlignment, typename TGapCosts, typename TTraceback, typename TExecPolicy>
422 struct DPProfileType<DPProfile_<TAlignment, TGapCosts, TTraceback, TExecPolicy>, DPProfileTypeId::T…
424 using Type = TTraceback;
427 template <typename TAlignment, typename TGapCosts, typename TTraceback, typename TExecPolicy>
428 struct DPProfileType<DPProfile_<TAlignment, TGapCosts, TTraceback, TExecPolicy>, DPProfileTypeId::E…
H A Ddp_align_simd_helper.h228 typename TAlgo, typename TBand, typename TFreeEndGaps, typename TTraceback,
236 … AlignConfig2<TAlgo, TBand, TFreeEndGaps, TTraceback> const & alignConfig, in _prepareAndRunSimdAlignment()
259 …ing TDPProfile = typename SetupAlignmentProfile_<TAlgo, TFreeEndGaps, TGapModel, TTraceback>::Type; in _prepareAndRunSimdAlignment()
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align/
H A Ddp_profile.h342 template <typename TAlignment, typename TGapCosts, typename TTraceback, typename TExecPolicy = Seri…
409 template <typename TAlignment, typename TGapCosts, typename TTraceback, typename TExecPolicy>
410 struct DPProfileType<DPProfile_<TAlignment, TGapCosts, TTraceback, TExecPolicy>, DPProfileTypeId::A…
415 template <typename TAlignment, typename TGapCosts, typename TTraceback, typename TExecPolicy>
416 struct DPProfileType<DPProfile_<TAlignment, TGapCosts, TTraceback, TExecPolicy>, DPProfileTypeId::G…
421 template <typename TAlignment, typename TGapCosts, typename TTraceback, typename TExecPolicy>
422 struct DPProfileType<DPProfile_<TAlignment, TGapCosts, TTraceback, TExecPolicy>, DPProfileTypeId::T…
424 using Type = TTraceback;
427 template <typename TAlignment, typename TGapCosts, typename TTraceback, typename TExecPolicy>
428 struct DPProfileType<DPProfile_<TAlignment, TGapCosts, TTraceback, TExecPolicy>, DPProfileTypeId::E…
H A Ddp_align_simd_helper.h228 typename TAlgo, typename TBand, typename TFreeEndGaps, typename TTraceback,
236 … AlignConfig2<TAlgo, TBand, TFreeEndGaps, TTraceback> const & alignConfig, in _prepareAndRunSimdAlignment()
259 …ing TDPProfile = typename SetupAlignmentProfile_<TAlgo, TFreeEndGaps, TGapModel, TTraceback>::Type; in _prepareAndRunSimdAlignment()
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align/
H A Ddp_profile.h221 template <typename TAlignment, typename TGapCosts, typename TTraceback>