TTracebackConfig (reference) in projects: dports

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Searched refs:TTracebackConfig (Results 1 – 20 of 20) sorted by relevance

/dports/biology/seqan/seqan-library-2.4.0/include/seqan/align/
H A D	dp_formula_affine.h	`89 TTracebackConfig{}); in _computeScore() 99 TTracebackConfig{}); in _computeScore() 106 TTracebackConfig{}); in _computeScore() 112 TTracebackConfig{}); in _computeScore() 120 TTracebackConfig{}); in _computeScore() 172 TTracebackConfig()); in _computeScore() 180 TTracebackConfig{}); in _computeScore() 224 TTracebackConfig()); in _computeScore() 232 TTracebackConfig{}); in _computeScore() 277 TTracebackConfig{}); in _computeScore() [all …]`
H A D	dp_formula_linear.h	63 typename TAlgorithm, typename TTracebackConfig, typename TExecPolicy> 86 TTracebackConfig{}); in _computeScore() 93 TTracebackConfig()); in _computeScore() 101 TTracebackConfig{}); in _computeScore() 112 typename TAlgorithm, typename TTracebackConfig, typename TExecPolicy> 134 TTracebackConfig()); in _computeScore() 142 TTracebackConfig{}); in _computeScore() 172 TTracebackConfig()); in _computeScore() 180 TTracebackConfig{}); in _computeScore() 215 TTracebackConfig{}); in _computeScore() [all …]
H A D	dp_formula_dynamic.h	420 typename TAlgorithm, typename TTracebackConfig, typename TExecPolicy> 462 TTracebackConfig{}); in _computeScore() 473 typename TAlgorithm, typename TTracebackConfig, typename TExecPolicy> 508 TTracebackConfig{}); in _computeScore() 519 typename TAlgorithm, typename TTracebackConfig, typename TExecPolicy> 548 TTracebackConfig{}); in _computeScore() 558 typename TAlgorithm, typename TTracebackConfig, typename TExecPolicy> 583 typename TAlgorithm, typename TTracebackConfig, typename TExecPolicy> 609 TTracebackConfig{}); in SEQAN_FUNC_ENABLE_IF() 619 typename TAlgorithm, typename TTracebackConfig, typename TExecPolicy> [all …]
H A D	dp_formula.h	`234 typename TAlgorithm, typename TTracebackConfig, typename TExecPolicy> 244 DPProfile_<TAlgorithm, TGapCosts, TTracebackConfig, TExecPolicy> const &) in _computeScore() argument 256 TTracebackConfig{}); in _computeScore()`
H A D	dp_profile.h	`539 template <typename TTracebackConfig> 540 struct IsTracebackEnabled_<TracebackOn<TTracebackConfig> >: 543 template <typename TTracebackConfig> 544 struct IsTracebackEnabled_<TracebackOn<TTracebackConfig> const>:`
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align/
H A D	dp_formula_affine.h	`89 TTracebackConfig{}); in _computeScore() 99 TTracebackConfig{}); in _computeScore() 106 TTracebackConfig{}); in _computeScore() 112 TTracebackConfig{}); in _computeScore() 120 TTracebackConfig{}); in _computeScore() 172 TTracebackConfig()); in _computeScore() 180 TTracebackConfig{}); in _computeScore() 224 TTracebackConfig()); in _computeScore() 232 TTracebackConfig{}); in _computeScore() 277 TTracebackConfig{}); in _computeScore() [all …]`
H A D	dp_formula_linear.h	63 typename TAlgorithm, typename TTracebackConfig, typename TExecPolicy> 86 TTracebackConfig{}); in _computeScore() 93 TTracebackConfig()); in _computeScore() 101 TTracebackConfig{}); in _computeScore() 112 typename TAlgorithm, typename TTracebackConfig, typename TExecPolicy> 134 TTracebackConfig()); in _computeScore() 142 TTracebackConfig{}); in _computeScore() 172 TTracebackConfig()); in _computeScore() 180 TTracebackConfig{}); in _computeScore() 215 TTracebackConfig{}); in _computeScore() [all …]
H A D	dp_formula_dynamic.h	420 typename TAlgorithm, typename TTracebackConfig, typename TExecPolicy> 462 TTracebackConfig{}); in _computeScore() 473 typename TAlgorithm, typename TTracebackConfig, typename TExecPolicy> 508 TTracebackConfig{}); in _computeScore() 519 typename TAlgorithm, typename TTracebackConfig, typename TExecPolicy> 548 TTracebackConfig{}); in _computeScore() 558 typename TAlgorithm, typename TTracebackConfig, typename TExecPolicy> 583 typename TAlgorithm, typename TTracebackConfig, typename TExecPolicy> 609 TTracebackConfig{}); in SEQAN_FUNC_ENABLE_IF() 619 typename TAlgorithm, typename TTracebackConfig, typename TExecPolicy> [all …]
H A D	dp_formula.h	`234 typename TAlgorithm, typename TTracebackConfig, typename TExecPolicy> 244 DPProfile_<TAlgorithm, TGapCosts, TTracebackConfig, TExecPolicy> const &) in _computeScore() argument 256 TTracebackConfig{}); in _computeScore()`
H A D	dp_profile.h	`539 template <typename TTracebackConfig> 540 struct IsTracebackEnabled_<TracebackOn<TTracebackConfig> >: 543 template <typename TTracebackConfig> 544 struct IsTracebackEnabled_<TracebackOn<TTracebackConfig> const>:`
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align/
H A D	dp_formula_linear.h	171 typename TAlgorithm, typename TTracebackConfig> 181 DPProfile_<TAlgorithm, LinearGaps, TTracebackConfig> const &) in _doComputeScore() 198 typename TAlgorithm, typename TTracebackConfig> 208 DPProfile_<TAlgorithm, LinearGaps, TTracebackConfig> const &) in _doComputeScore() 222 typename TAlgorithm, typename TTracebackConfig> 232 DPProfile_<TAlgorithm, LinearGaps, TTracebackConfig> const &) in _doComputeScore() 246 typename TAlgorithm, typename TTracebackConfig> 256 DPProfile_<TAlgorithm, LinearGaps, TTracebackConfig> const &) in _doComputeScore() 261 if (!IsTracebackEnabled_<TTracebackConfig>::VALUE) in _doComputeScore() 272 typename TAlgorithm, typename TTracebackConfig> [all …]
H A D	dp_formula_dynamic.h	257 typename TAlgorithm, typename TTracebackConfig> 267 DPProfile_<TAlgorithm, DynamicGaps, TTracebackConfig> const &) in _doComputeScore() 292 typename TAlgorithm, typename TTracebackConfig> 302 DPProfile_<TAlgorithm, DynamicGaps, TTracebackConfig> const &) in _doComputeScore() 314 TTracebackConfig(), RecursionDirectionDiagonal()); in _doComputeScore() 322 typename TAlgorithm, typename TTracebackConfig> 332 DPProfile_<TAlgorithm, DynamicGaps, TTracebackConfig> const &) in _doComputeScore() 351 typename TAlgorithm, typename TTracebackConfig> 361 DPProfile_<TAlgorithm, DynamicGaps, TTracebackConfig> const &) in _doComputeScore() 374 typename TAlgorithm, typename TTracebackConfig> [all …]
H A D	dp_formula_affine.h	380 typename TAlgorithm, typename TTracebackConfig> 390 DPProfile_<TAlgorithm, AffineGaps, TTracebackConfig> const &) in _doComputeScore() 410 …return _internalComputeScore(activeCell, tmpScore, tvGap, tvMax, TTracebackConfig(), RecursionDire… in _doComputeScore() 418 typename TAlgorithm, typename TTracebackConfig> 428 DPProfile_<TAlgorithm, AffineGaps, TTracebackConfig> const &) in _doComputeScore() 446 typename TAlgorithm, typename TTracebackConfig> 456 DPProfile_<TAlgorithm, AffineGaps, TTracebackConfig> const &) in _doComputeScore() 478 typename TAlgorithm, typename TTracebackConfig> 488 DPProfile_<TAlgorithm, AffineGaps, TTracebackConfig> const &) in _doComputeScore() 503 typename TAlgorithm, typename TTracebackConfig> [all …]
H A D	dp_profile.h	`362 template <typename TTracebackConfig> 363 struct IsTracebackEnabled_<TracebackOn<TTracebackConfig> >: 366 template <typename TTracebackConfig> 367 struct IsTracebackEnabled_<TracebackOn<TTracebackConfig> const>:`
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/seeds/
H A D	banded_chain_alignment_impl.h	429 typename TSpec, typename TDPMatrixLocation, typename TTracebackConfig> 483 typename TTracebackConfig> 506 typename TTracebackConfig> 533 typename TTracebackConfig> 556 typename TTracebackConfig> 721 typename TTracebackConfig> 788 TracebackOn<TTracebackConfig> >()); in _initializeBandedChain() 1143 BandedChainFinalDPMatrix>, TGaps, TracebackOn<TTracebackConfig> >()); in _finishBandedChain() 1181 typename TGapSpec, typename TTracebackConfig> 1191 TracebackOn<TTracebackConfig> > const & profile) in _computeAlignment() [all …]
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/seeds/
H A D	banded_chain_alignment_impl.h	435 TracebackOn<TTracebackConfig>, in _computeCell() 482 TracebackOn<TTracebackConfig>, in _computeCell() 546 TracebackOn<TTracebackConfig>, in _computeCell() 579 TracebackOn<TTracebackConfig>, in _computeCell() 616 TracebackOn<TTracebackConfig>, in _computeCell() 649 TracebackOn<TTracebackConfig>, in _computeCell() 809 typename TTracebackConfig, typename TExecPolicy> 875 TracebackOn<TTracebackConfig>, TExecPolicy>()); in _initializeBandedChain() 1237 … BandedChainFinalDPMatrix>, TGaps, TracebackOn<TTracebackConfig>, TExecPolicy>()); in _finishBandedChain() 1276 typename TGapSpec, typename TTracebackConfig, typename TExecPolicy> [all …]
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/seeds/
H A D	banded_chain_alignment_impl.h	435 TracebackOn<TTracebackConfig>, in _computeCell() 482 TracebackOn<TTracebackConfig>, in _computeCell() 546 TracebackOn<TTracebackConfig>, in _computeCell() 579 TracebackOn<TTracebackConfig>, in _computeCell() 616 TracebackOn<TTracebackConfig>, in _computeCell() 649 TracebackOn<TTracebackConfig>, in _computeCell() 809 typename TTracebackConfig, typename TExecPolicy> 875 TracebackOn<TTracebackConfig>, TExecPolicy>()); in _initializeBandedChain() 1237 … BandedChainFinalDPMatrix>, TGaps, TracebackOn<TTracebackConfig>, TExecPolicy>()); in _finishBandedChain() 1276 typename TGapSpec, typename TTracebackConfig, typename TExecPolicy> [all …]
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/align_extend/
H A D	align_extend.h	116 typename TScoreSpec, typename TTracebackConfig> 125 TTracebackConfig const & /gapOrientation/, in _setUpAndRunAlignImpl() 139 typename TScoreSpec, typename TTracebackConfig> 148 TTracebackConfig const & /gapOrientation/, in _setUpAndRunAlignImpl() 162 typename TScoreSpec, typename TTracebackConfig> 171 TTracebackConfig const & /gapOrientation/, in _setUpAndRunAlignImpl() 185 typename TScoreSpec, typename TTracebackConfig> 194 TTracebackConfig const & /gapOrientation/, in _setUpAndRunAlignImpl()
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align_extend/
H A D	align_extend.h	116 typename TScoreSpec, typename TTracebackConfig> 125 TTracebackConfig const & /gapOrientation/, in _setUpAndRunAlignImpl() 139 typename TScoreSpec, typename TTracebackConfig> 148 TTracebackConfig const & /gapOrientation/, in _setUpAndRunAlignImpl() 162 typename TScoreSpec, typename TTracebackConfig> 171 TTracebackConfig const & /gapOrientation/, in _setUpAndRunAlignImpl() 185 typename TScoreSpec, typename TTracebackConfig> 194 TTracebackConfig const & /gapOrientation/, in _setUpAndRunAlignImpl()
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align_extend/
H A D	align_extend.h	131 typename TScoreSpec, typename TTracebackConfig> 140 TTracebackConfig const & /gapOrientation/, in _setUpAndRunAlignImpl() 154 typename TScoreSpec, typename TTracebackConfig> 163 TTracebackConfig const & /gapOrientation/, in _setUpAndRunAlignImpl() 177 typename TScoreSpec, typename TTracebackConfig> 186 TTracebackConfig const & /gapOrientation/, in _setUpAndRunAlignImpl() 200 typename TScoreSpec, typename TTracebackConfig> 209 TTracebackConfig const & /gapOrientation/, in _setUpAndRunAlignImpl()