/dports/biology/ugene/ugene-40.1/src/plugins/ngs_reads_classification/src/ |
H A D | TaxonomySupport.h | 45 typedef uint TaxID; typedef 46 typedef QSet<TaxID> TaxIDSet; 61 TaxID getParent(TaxID id) const; 62 QList<TaxID> getChildren(TaxID id) const; 69 bool contains(TaxID id) const; 78 TaxID match(TaxID id, QSet<TaxID> filter); 90 QList<TaxID> nodes; 106 QMultiMap<TaxID, TaxID> childs; 126 QList<TaxID> getChildrenSorted(TaxID id) const; 132 QSet<TaxID> selected; [all …]
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H A D | TaxonomySupport.cpp | 75 const TaxID TaxonomyTree::UNDEFINED_ID = (TaxID)-1; 125 TaxID TaxonomyTree::getParent(TaxID id) const { in getParent() 133 QList<TaxID> TaxonomyTree::getChildren(TaxID id) const { in getChildren() 149 TaxID TaxonomyTree::match(TaxID id, QSet<TaxID> filter) { in match() 188 bool operator()(const TaxID left, const TaxID right) const { in operator ()() 323 bool taxIdLessThan(const TaxID a, const TaxID b) { in taxIdLessThan() 344 QList<TaxID> TaxonomyTreeModel::getChildrenSorted(TaxID id) const { in getChildrenSorted() 372 TaxID item = static_cast<TaxID>(index.internalId()); in setData() 416 TaxID item = static_cast<TaxID>(index.internalId()); in data() 446 TaxID item = static_cast<TaxID>(index.internalId()); in flags() [all …]
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H A D | ClassificationReportWorker.cpp | 289 TaxID tax_id; 293 TaxID superkingdom_tax_id; 295 TaxID phylum_tax_id; 297 TaxID class_tax_id; 299 TaxID order_tax_id; 301 TaxID family_tax_id; 303 TaxID genus_tax_id; 305 TaxID species_tax_id; 393 QHash<TaxID, uint> claded; in run() 416 TaxID id = index; in run() [all …]
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H A D | ClassificationFilterWorker.h | 51 QSet<TaxID> taxons; 147 const QMap<QString, TaxID> &getFoundIDs() const { in getFoundIDs() 166 QMultiMap<QString, TaxID> foundIDs;
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H A D | ClassificationFilterWorker.cpp | 97 QSet<TaxID> taxons; in validateTaxaListAttribute() 100 TaxID id = idStr.toInt(&OK); in validateTaxaListAttribute() 276 TaxID id = idStr.toInt(&OK); in init() 362 const QMap<QString, TaxID> &found = task->getFoundIDs(); in sl_taskFinished() 364 QList<TaxID> ids = found.values(inputFile); in sl_taskFinished() 366 foreach (const TaxID &id, cfg.taxons) { in sl_taskFinished() 472 TaxID id = report.value(seqName, TaxonomyTree::UNDEFINED_ID); in filter()
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H A D | ClassificationReportWorker.h | 108 …ClassificationReportTask(const QMap<TaxID, uint> &data, uint totalCount, const QString &reportUrl,… 116 QMap<TaxID, uint> data;
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/dports/biology/mmseqs2/MMseqs2-13-45111/src/taxonomy/ |
H A D | NcbiTaxonomy.h | 16 typedef int TaxID; typedef 21 TaxID taxId; 22 TaxID parentTaxId; 28 TaxonNode(int id, TaxID taxId, TaxID parentTaxId, size_t rankIdx, size_t nameIdx) in TaxonNode() 36 TaxID taxon; 44 TaxID taxon; 102 TaxID LCA(TaxID taxonA, TaxID taxonB) const; 111 bool IsAncestor(TaxID ancestor, TaxID child); 113 bool nodeExists(TaxID taxId) const; 115 …std::unordered_map<TaxID, TaxonCounts> getCladeCounts(std::unordered_map<TaxID, unsigned int>& tax… [all …]
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H A D | taxonomyreport.cpp | 31 unsigned int cladeCountVal(const std::unordered_map<TaxID, TaxonCounts> &map, TaxID key) { in cladeCountVal() argument 32 typename std::unordered_map<TaxID, TaxonCounts>::const_iterator it = map.find(key); in cladeCountVal() 40 …biTaxonomy &taxDB, const std::unordered_map<TaxID, TaxonCounts> &cladeCounts, unsigned long totalR… in taxReport() argument 59 std::vector<TaxID> children = it->second.children; in taxReport() 62 TaxID childTaxId = children[i]; in taxReport() 100 …biTaxonomy &taxDB, const std::unordered_map<TaxID, TaxonCounts> &cladeCounts, unsigned long totalR… in kronaReport() argument 115 std::vector<TaxID> children = it->second.children; in kronaReport() 118 TaxID childTaxId = children[i]; in kronaReport() 162 std::unordered_map<TaxID, unsigned int> taxCounts; in taxonomyreport() 171 std::unordered_map<TaxID, unsigned int> localTaxCounts; in taxonomyreport() [all …]
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H A D | NcbiTaxonomy.cpp | 124 TaxID taxId = (TaxID) strtol(result[0].c_str(), NULL, 10); in loadNodes() 125 TaxID parentTaxId = (TaxID) strtol(result[1].c_str(), NULL, 10); in loadNodes() 259 bool NcbiTaxonomy::IsAncestor(TaxID ancestor, TaxID child) { in IsAncestor() 280 TaxID NcbiTaxonomy::LCA(TaxID taxonA, TaxID taxonB) const { in LCA() 529 const TaxID ROOT_TAXID = 1; 546 TaxID childTaxon; 579 std::map<TaxID, TaxNode> ancTaxIdsCounts; in weightedMajorityLCA() 587 TaxID currTaxId = setTaxa[i].taxon; in weightedMajorityLCA() 627 TaxID selctedTaxon = 0; in weightedMajorityLCA() 644 TaxID currTaxId = it->first; in weightedMajorityLCA() [all …]
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H A D | TaxonomyExpression.h | 72 bool isAncestor(TaxID taxId) { in isAncestor() 81 TaxID taxId; 89 bool retVal = o->t->IsAncestor((TaxID) a, o->taxId); in acst()
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H A D | lca.cpp | 53 std::vector<TaxID> blacklist; in dolca() 56 TaxID taxon = Util::fast_atoi<int>(splits[i].c_str()); in dolca() 119 TaxID taxon; in dolca()
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/dports/net/storj/storj-1.45.3/vendor/github.com/stripe/stripe-go/v72/taxid/ |
H A D | client.go | 25 func New(params *stripe.TaxIDParams) (*stripe.TaxID, error) { 30 func (c Client) New(params *stripe.TaxIDParams) (*stripe.TaxID, error) { 40 taxid := &stripe.TaxID{} 46 func Get(id string, params *stripe.TaxIDParams) (*stripe.TaxID, error) { 51 func (c Client) Get(id string, params *stripe.TaxIDParams) (*stripe.TaxID, error) { 62 taxid := &stripe.TaxID{} 68 func Del(id string, params *stripe.TaxIDParams) (*stripe.TaxID, error) { 73 func (c Client) Del(id string, params *stripe.TaxIDParams) (*stripe.TaxID, error) { 84 taxid := &stripe.TaxID{} 119 func (i *Iter) TaxID() *stripe.TaxID { func [all …]
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/dports/biology/mmseqs2/MMseqs2-13-45111/src/util/ |
H A D | nrtotaxmapping.cpp | 19 …ol compareToFirstString(const std::pair<std::string, TaxID>& lhs, const std::pair<std::string, Tax… in compareToFirstString() 23 …ol sortMappingByDbKey(const std::pair<unsigned int, TaxID>& lhs, const std::pair<unsigned int, Tax… in sortMappingByDbKey() 27 … bool sortByFirstString(const std::pair<std::string, TaxID>& lhs, const std::pair<std::string, Tax… in sortByFirstString() 39 TaxID lookupTaxID(const std::vector<std::pair<std::string, TaxID>>& mapping, const std::string& val… in lookupTaxID() 40 std::pair<std::string, TaxID> val; in lookupTaxID() 42 std::vector<std::pair<std::string, TaxID>>::const_iterator mappingIt in lookupTaxID() 66 std::vector<std::pair<std::string, TaxID>> accessionMapping; in nrtotaxmapping() 108 std::vector<std::pair<std::string, TaxID>> uniqueNames; in nrtotaxmapping() 139 std::vector<TaxID> taxa; in nrtotaxmapping() 168 TaxID taxID = lookupTaxID(uniqueNames, species); in nrtotaxmapping() [all …]
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/dports/editors/lazarus/lazarus/components/sparta/generics/examples/THashMapExtendedEqualityComparer/ |
H A D | THashMapExtendedEqualityComparer.lpr | 17 TaxID: Integer; 26 TaxID := ATaxID; 32 Result := Format('TaxID = %-10d Name = %-17s', [TaxID, Name]); 37 Result := ALeft.TaxID = ARight.TaxID; 45 TDefaultHashFactory.GetHashList(@AValue.TaxID, SizeOf(Integer), AHashList); 95 LSansa.TaxID := 668;
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/dports/lang/fpc-source/fpc-3.2.2/packages/rtl-generics/examples/thashmapextendedequalitycomparer/ |
H A D | thashmapextendedequalitycomparer.lpr | 17 TaxID: Integer; 26 TaxID := ATaxID; 32 Result := Format('TaxID = %-10d Name = %-17s', [TaxID, Name]); 37 Result := ALeft.TaxID = ARight.TaxID; 45 TDelphiQuadrupleHashFactory.GetHashList(@AValue.TaxID, SizeOf(Integer), AHashList); 95 LSansa.TaxID := 668;
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/dports/lang/fpc-rtl-generics/fpc-3.2.2/packages/rtl-generics/examples/thashmapextendedequalitycomparer/ |
H A D | thashmapextendedequalitycomparer.lpr | 17 TaxID: Integer; 26 TaxID := ATaxID; 32 Result := Format('TaxID = %-10d Name = %-17s', [TaxID, Name]); 37 Result := ALeft.TaxID = ARight.TaxID; 45 TDelphiQuadrupleHashFactory.GetHashList(@AValue.TaxID, SizeOf(Integer), AHashList); 95 LSansa.TaxID := 668;
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/dports/editors/lazarus-qt5/lazarus/components/sparta/generics/examples/THashMapExtendedEqualityComparer/ |
H A D | THashMapExtendedEqualityComparer.lpr | 17 TaxID: Integer; 26 TaxID := ATaxID; 32 Result := Format('TaxID = %-10d Name = %-17s', [TaxID, Name]); 37 Result := ALeft.TaxID = ARight.TaxID; 45 TDefaultHashFactory.GetHashList(@AValue.TaxID, SizeOf(Integer), AHashList); 95 LSansa.TaxID := 668;
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/dports/net/storj/storj-1.45.3/vendor/github.com/stripe/stripe-go/v72/ |
H A D | taxid.go | 88 type TaxID struct { struct 106 Data []*TaxID `json:"data"` 112 func (t *TaxID) UnmarshalJSON(data []byte) error { argument 118 type taxID TaxID 124 *t = TaxID(v)
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/dports/finance/weberp/webERP/sql/mysql/ |
H A D | upgrade2.7-2.8.sql | 21 ALTER TABLE TaxAuthorities CHANGE TaxID TaxID tinyint(4) NOT NULL default '0';
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/dports/security/lego/lego-4.5.3/vendor/github.com/linode/linodego/ |
H A D | account.go | 19 TaxID string `json:"tax_id"` member
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/dports/net-mgmt/prometheus2/prometheus-2.30.3/vendor/github.com/linode/linodego/ |
H A D | account.go | 19 TaxID string `json:"tax_id"` member
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/dports/net/traefik/traefik-2.6.1/vendor/github.com/linode/linodego/ |
H A D | account.go | 19 TaxID string `json:"tax_id"` member
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/SeqIO/ |
H A D | embl.t | 254 is($seq->species->ncbi_taxid, 7165, 'TaxID set correctly'); 270 # Check that TaxID has roundtripped 273 is($embl_species->ncbi_taxid, 7165, "NCBI TaxID has roundtripped"); 287 is($seq->species->ncbi_taxid, 7165, 'TaxID set correctly'); 310 # Check that TaxID has roundtripped
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/dports/security/vault/vault-1.8.2/vendor/github.com/hashicorp/consul/vendor/github.com/linode/linodego/ |
H A D | account.go | 18 TaxID string `json:"tax_id"` member
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/dports/security/vault/vault-1.8.2/vendor/github.com/linode/linodego/ |
H A D | account.go | 18 TaxID string `json:"tax_id"` member
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