Home
last modified time | relevance | path

Searched refs:TaxID (Results 1 – 25 of 62) sorted by relevance

123

/dports/biology/ugene/ugene-40.1/src/plugins/ngs_reads_classification/src/
H A DTaxonomySupport.h45 typedef uint TaxID; typedef
46 typedef QSet<TaxID> TaxIDSet;
61 TaxID getParent(TaxID id) const;
62 QList<TaxID> getChildren(TaxID id) const;
69 bool contains(TaxID id) const;
78 TaxID match(TaxID id, QSet<TaxID> filter);
90 QList<TaxID> nodes;
106 QMultiMap<TaxID, TaxID> childs;
126 QList<TaxID> getChildrenSorted(TaxID id) const;
132 QSet<TaxID> selected;
[all …]
H A DTaxonomySupport.cpp75 const TaxID TaxonomyTree::UNDEFINED_ID = (TaxID)-1;
125 TaxID TaxonomyTree::getParent(TaxID id) const { in getParent()
133 QList<TaxID> TaxonomyTree::getChildren(TaxID id) const { in getChildren()
149 TaxID TaxonomyTree::match(TaxID id, QSet<TaxID> filter) { in match()
188 bool operator()(const TaxID left, const TaxID right) const { in operator ()()
323 bool taxIdLessThan(const TaxID a, const TaxID b) { in taxIdLessThan()
344 QList<TaxID> TaxonomyTreeModel::getChildrenSorted(TaxID id) const { in getChildrenSorted()
372 TaxID item = static_cast<TaxID>(index.internalId()); in setData()
416 TaxID item = static_cast<TaxID>(index.internalId()); in data()
446 TaxID item = static_cast<TaxID>(index.internalId()); in flags()
[all …]
H A DClassificationReportWorker.cpp289 TaxID tax_id;
293 TaxID superkingdom_tax_id;
295 TaxID phylum_tax_id;
297 TaxID class_tax_id;
299 TaxID order_tax_id;
301 TaxID family_tax_id;
303 TaxID genus_tax_id;
305 TaxID species_tax_id;
393 QHash<TaxID, uint> claded; in run()
416 TaxID id = index; in run()
[all …]
H A DClassificationFilterWorker.h51 QSet<TaxID> taxons;
147 const QMap<QString, TaxID> &getFoundIDs() const { in getFoundIDs()
166 QMultiMap<QString, TaxID> foundIDs;
H A DClassificationFilterWorker.cpp97 QSet<TaxID> taxons; in validateTaxaListAttribute()
100 TaxID id = idStr.toInt(&OK); in validateTaxaListAttribute()
276 TaxID id = idStr.toInt(&OK); in init()
362 const QMap<QString, TaxID> &found = task->getFoundIDs(); in sl_taskFinished()
364 QList<TaxID> ids = found.values(inputFile); in sl_taskFinished()
366 foreach (const TaxID &id, cfg.taxons) { in sl_taskFinished()
472 TaxID id = report.value(seqName, TaxonomyTree::UNDEFINED_ID); in filter()
H A DClassificationReportWorker.h108 …ClassificationReportTask(const QMap<TaxID, uint> &data, uint totalCount, const QString &reportUrl,…
116 QMap<TaxID, uint> data;
/dports/biology/mmseqs2/MMseqs2-13-45111/src/taxonomy/
H A DNcbiTaxonomy.h16 typedef int TaxID; typedef
21 TaxID taxId;
22 TaxID parentTaxId;
28 TaxonNode(int id, TaxID taxId, TaxID parentTaxId, size_t rankIdx, size_t nameIdx) in TaxonNode()
36 TaxID taxon;
44 TaxID taxon;
102 TaxID LCA(TaxID taxonA, TaxID taxonB) const;
111 bool IsAncestor(TaxID ancestor, TaxID child);
113 bool nodeExists(TaxID taxId) const;
115 …std::unordered_map<TaxID, TaxonCounts> getCladeCounts(std::unordered_map<TaxID, unsigned int>& tax…
[all …]
H A Dtaxonomyreport.cpp31 unsigned int cladeCountVal(const std::unordered_map<TaxID, TaxonCounts> &map, TaxID key) { in cladeCountVal() argument
32 typename std::unordered_map<TaxID, TaxonCounts>::const_iterator it = map.find(key); in cladeCountVal()
40 …biTaxonomy &taxDB, const std::unordered_map<TaxID, TaxonCounts> &cladeCounts, unsigned long totalR… in taxReport() argument
59 std::vector<TaxID> children = it->second.children; in taxReport()
62 TaxID childTaxId = children[i]; in taxReport()
100 …biTaxonomy &taxDB, const std::unordered_map<TaxID, TaxonCounts> &cladeCounts, unsigned long totalR… in kronaReport() argument
115 std::vector<TaxID> children = it->second.children; in kronaReport()
118 TaxID childTaxId = children[i]; in kronaReport()
162 std::unordered_map<TaxID, unsigned int> taxCounts; in taxonomyreport()
171 std::unordered_map<TaxID, unsigned int> localTaxCounts; in taxonomyreport()
[all …]
H A DNcbiTaxonomy.cpp124 TaxID taxId = (TaxID) strtol(result[0].c_str(), NULL, 10); in loadNodes()
125 TaxID parentTaxId = (TaxID) strtol(result[1].c_str(), NULL, 10); in loadNodes()
259 bool NcbiTaxonomy::IsAncestor(TaxID ancestor, TaxID child) { in IsAncestor()
280 TaxID NcbiTaxonomy::LCA(TaxID taxonA, TaxID taxonB) const { in LCA()
529 const TaxID ROOT_TAXID = 1;
546 TaxID childTaxon;
579 std::map<TaxID, TaxNode> ancTaxIdsCounts; in weightedMajorityLCA()
587 TaxID currTaxId = setTaxa[i].taxon; in weightedMajorityLCA()
627 TaxID selctedTaxon = 0; in weightedMajorityLCA()
644 TaxID currTaxId = it->first; in weightedMajorityLCA()
[all …]
H A DTaxonomyExpression.h72 bool isAncestor(TaxID taxId) { in isAncestor()
81 TaxID taxId;
89 bool retVal = o->t->IsAncestor((TaxID) a, o->taxId); in acst()
H A Dlca.cpp53 std::vector<TaxID> blacklist; in dolca()
56 TaxID taxon = Util::fast_atoi<int>(splits[i].c_str()); in dolca()
119 TaxID taxon; in dolca()
/dports/net/storj/storj-1.45.3/vendor/github.com/stripe/stripe-go/v72/taxid/
H A Dclient.go25 func New(params *stripe.TaxIDParams) (*stripe.TaxID, error) {
30 func (c Client) New(params *stripe.TaxIDParams) (*stripe.TaxID, error) {
40 taxid := &stripe.TaxID{}
46 func Get(id string, params *stripe.TaxIDParams) (*stripe.TaxID, error) {
51 func (c Client) Get(id string, params *stripe.TaxIDParams) (*stripe.TaxID, error) {
62 taxid := &stripe.TaxID{}
68 func Del(id string, params *stripe.TaxIDParams) (*stripe.TaxID, error) {
73 func (c Client) Del(id string, params *stripe.TaxIDParams) (*stripe.TaxID, error) {
84 taxid := &stripe.TaxID{}
119 func (i *Iter) TaxID() *stripe.TaxID { func
[all …]
/dports/biology/mmseqs2/MMseqs2-13-45111/src/util/
H A Dnrtotaxmapping.cpp19 …ol compareToFirstString(const std::pair<std::string, TaxID>& lhs, const std::pair<std::string, Tax… in compareToFirstString()
23 …ol sortMappingByDbKey(const std::pair<unsigned int, TaxID>& lhs, const std::pair<unsigned int, Tax… in sortMappingByDbKey()
27 … bool sortByFirstString(const std::pair<std::string, TaxID>& lhs, const std::pair<std::string, Tax… in sortByFirstString()
39 TaxID lookupTaxID(const std::vector<std::pair<std::string, TaxID>>& mapping, const std::string& val… in lookupTaxID()
40 std::pair<std::string, TaxID> val; in lookupTaxID()
42 std::vector<std::pair<std::string, TaxID>>::const_iterator mappingIt in lookupTaxID()
66 std::vector<std::pair<std::string, TaxID>> accessionMapping; in nrtotaxmapping()
108 std::vector<std::pair<std::string, TaxID>> uniqueNames; in nrtotaxmapping()
139 std::vector<TaxID> taxa; in nrtotaxmapping()
168 TaxID taxID = lookupTaxID(uniqueNames, species); in nrtotaxmapping()
[all …]
/dports/editors/lazarus/lazarus/components/sparta/generics/examples/THashMapExtendedEqualityComparer/
H A DTHashMapExtendedEqualityComparer.lpr17 TaxID: Integer;
26 TaxID := ATaxID;
32 Result := Format('TaxID = %-10d Name = %-17s', [TaxID, Name]);
37 Result := ALeft.TaxID = ARight.TaxID;
45 TDefaultHashFactory.GetHashList(@AValue.TaxID, SizeOf(Integer), AHashList);
95 LSansa.TaxID := 668;
/dports/lang/fpc-source/fpc-3.2.2/packages/rtl-generics/examples/thashmapextendedequalitycomparer/
H A Dthashmapextendedequalitycomparer.lpr17 TaxID: Integer;
26 TaxID := ATaxID;
32 Result := Format('TaxID = %-10d Name = %-17s', [TaxID, Name]);
37 Result := ALeft.TaxID = ARight.TaxID;
45 TDelphiQuadrupleHashFactory.GetHashList(@AValue.TaxID, SizeOf(Integer), AHashList);
95 LSansa.TaxID := 668;
/dports/lang/fpc-rtl-generics/fpc-3.2.2/packages/rtl-generics/examples/thashmapextendedequalitycomparer/
H A Dthashmapextendedequalitycomparer.lpr17 TaxID: Integer;
26 TaxID := ATaxID;
32 Result := Format('TaxID = %-10d Name = %-17s', [TaxID, Name]);
37 Result := ALeft.TaxID = ARight.TaxID;
45 TDelphiQuadrupleHashFactory.GetHashList(@AValue.TaxID, SizeOf(Integer), AHashList);
95 LSansa.TaxID := 668;
/dports/editors/lazarus-qt5/lazarus/components/sparta/generics/examples/THashMapExtendedEqualityComparer/
H A DTHashMapExtendedEqualityComparer.lpr17 TaxID: Integer;
26 TaxID := ATaxID;
32 Result := Format('TaxID = %-10d Name = %-17s', [TaxID, Name]);
37 Result := ALeft.TaxID = ARight.TaxID;
45 TDefaultHashFactory.GetHashList(@AValue.TaxID, SizeOf(Integer), AHashList);
95 LSansa.TaxID := 668;
/dports/net/storj/storj-1.45.3/vendor/github.com/stripe/stripe-go/v72/
H A Dtaxid.go88 type TaxID struct { struct
106 Data []*TaxID `json:"data"`
112 func (t *TaxID) UnmarshalJSON(data []byte) error { argument
118 type taxID TaxID
124 *t = TaxID(v)
/dports/finance/weberp/webERP/sql/mysql/
H A Dupgrade2.7-2.8.sql21 ALTER TABLE TaxAuthorities CHANGE TaxID TaxID tinyint(4) NOT NULL default '0';
/dports/security/lego/lego-4.5.3/vendor/github.com/linode/linodego/
H A Daccount.go19 TaxID string `json:"tax_id"` member
/dports/net-mgmt/prometheus2/prometheus-2.30.3/vendor/github.com/linode/linodego/
H A Daccount.go19 TaxID string `json:"tax_id"` member
/dports/net/traefik/traefik-2.6.1/vendor/github.com/linode/linodego/
H A Daccount.go19 TaxID string `json:"tax_id"` member
/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/SeqIO/
H A Dembl.t254 is($seq->species->ncbi_taxid, 7165, 'TaxID set correctly');
270 # Check that TaxID has roundtripped
273 is($embl_species->ncbi_taxid, 7165, "NCBI TaxID has roundtripped");
287 is($seq->species->ncbi_taxid, 7165, 'TaxID set correctly');
310 # Check that TaxID has roundtripped
/dports/security/vault/vault-1.8.2/vendor/github.com/hashicorp/consul/vendor/github.com/linode/linodego/
H A Daccount.go18 TaxID string `json:"tax_id"` member
/dports/security/vault/vault-1.8.2/vendor/github.com/linode/linodego/
H A Daccount.go18 TaxID string `json:"tax_id"` member

123