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Searched refs:Thymine (Results 1 – 25 of 156) sorted by relevance

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/dports/science/massxpert/massxpert-c229f4a1abde3c20b83a90e50f9c5d79104dfa5f/data/pol-chem-defs/dna/
H A Dchem_pad.conf214 chempadkey%Bound-Thymine%C5H5O2N2%bound Thymine%[lawngreen,black]
222 chempadkey%Res-Thymine%C10H13O7N2P%residue Thymine%[lawngreen,black]
228 chempadkey%Res-1b5P-Thymine%C10H14O8N2P%residue Thymine (1b5P)%[lawngreen,black]
233 chempadkey%Res-1b3OH-Thymine%C10H14O7N2P%residue Thymine (1b3OH)%[lawngreen,black]
238 chempadkey%Res-1b5OH-Thymine%C10H13O5N2%residue Thymine (1b5OH)%[lawngreen,black]
H A Dcross_linker_dictionary30 Thymine-dimer%thymine-dimer.svg
/dports/science/massxpert/massxpert-c229f4a1abde3c20b83a90e50f9c5d79104dfa5f/data/pol-chem-defs/nucac/
H A Dchem_pad.conf214 chempadkey%Bound-Thymine%C5H5O2N2%bound Thymine%[lawngreen,black]
222 chempadkey%Res-Thymine%C10H13O7N2P%residue Thymine%[lawngreen,black]
228 chempadkey%Res-1b5P-Thymine%C10H14O8N2P%residue Thymine (1b5P)%[lawngreen,black]
233 chempadkey%Res-1b3OH-Thymine%C10H14O7N2P%residue Thymine (1b3OH)%[lawngreen,black]
238 chempadkey%Res-1b5OH-Thymine%C10H13O5N2%residue Thymine (1b5OH)%[lawngreen,black]
H A Dcross_linker_dictionary30 Thymine-dimer%thymine-dimer.svg
/dports/biology/velvet/velvet_1.2.10/contrib/MetaVelvet-v0.3.1/src/
H A DtightString.c39 static const Nucleotide Thymine = 3; variable
87 return Thymine; in charToNucleotide()
95 return Thymine; in charToNucleotide()
123 nucleotideNum = Thymine; in writeNucleotide()
135 nucleotideNum = Thymine; in writeNucleotide()
492 return Thymine; in getNucleotideFromString()
/dports/biology/velvet/velvet_1.2.10/src/
H A DtightString.c32 static const Nucleotide Thymine = 3; variable
91 nucleotideNum = Thymine; in writeNucleotide()
106 nucleotideNum = Thymine; in writeNucleotide()
/dports/biology/velvet/velvet_1.2.10/contrib/MetaVelvet-1.2.01/Velvet-1.1.06/
H A DtightString.c39 static const Nucleotide Thymine = 3; variable
98 nucleotideNum = Thymine; in writeNucleotide()
113 nucleotideNum = Thymine; in writeNucleotide()
/dports/science/tinker/tinker/params/
H A Damoebanuc17.prm127 atom 42 20 C "Thymine C7" 6 12.011 4
128 atom 43 6 C "Thymine C5" 6 12.011 3
129 atom 44 14 C "Thymine C4" 6 12.011 3
130 atom 45 6 C "Thymine C6" 6 12.011 3
131 atom 46 21 N "Thymine N1" 7 14.007 3
132 atom 47 12 N "Thymine N3" 7 14.007 3
133 atom 48 14 C "Thymine C2" 6 12.011 3
134 atom 49 22 H "Thymine H7" 1 1.008 1
135 atom 50 16 O "Thymine O2" 8 15.999 1
136 atom 51 9 H "Thymine H6" 1 1.008 1
[all …]
H A Damber94.prm926 atom 1203 23 OS "D-Thymine O5'" 8 16.000 2
927 atom 1204 1 CT "D-Thymine C5'" 6 12.010 4
928 atom 1205 35 H1 "D-Thymine H5'1" 1 1.008 1
929 atom 1206 35 H1 "D-Thymine H5'2" 1 1.008 1
930 atom 1207 1 CT "D-Thymine C4'" 6 12.010 4
931 atom 1208 35 H1 "D-Thymine H4'" 1 1.008 1
932 atom 1209 23 OS "D-Thymine O4'" 8 16.000 2
933 atom 1210 1 CT "D-Thymine C1'" 6 12.010 4
934 atom 1211 36 H2 "D-Thymine H1'" 1 1.008 1
935 atom 1212 1 CT "D-Thymine C3'" 6 12.010 4
[all …]
H A Damber99sb.prm935 atom 1203 23 OS "D-Thymine O5'" 8 16.000 2
936 atom 1204 1 CT "D-Thymine C5'" 6 12.010 4
937 atom 1205 35 H1 "D-Thymine H5'1" 1 1.008 1
938 atom 1206 35 H1 "D-Thymine H5'2" 1 1.008 1
939 atom 1207 1 CT "D-Thymine C4'" 6 12.010 4
940 atom 1208 35 H1 "D-Thymine H4'" 1 1.008 1
941 atom 1209 23 OS "D-Thymine O4'" 8 16.000 2
942 atom 1210 1 CT "D-Thymine C1'" 6 12.010 4
943 atom 1211 36 H2 "D-Thymine H1'" 1 1.008 1
944 atom 1212 1 CT "D-Thymine C3'" 6 12.010 4
[all …]
H A Damber14sb.prm913 atom 1203 23 OS "D-Thymine O5'" 8 16.000 2
914 atom 1204 1 CT "D-Thymine C5'" 6 12.010 4
915 atom 1205 35 H1 "D-Thymine H5'1" 1 1.008 1
916 atom 1206 35 H1 "D-Thymine H5'2" 1 1.008 1
917 atom 1207 1 CT "D-Thymine C4'" 6 12.010 4
918 atom 1208 35 H1 "D-Thymine H4'" 1 1.008 1
919 atom 1209 23 OS "D-Thymine O4'" 8 16.000 2
920 atom 1210 1 CT "D-Thymine C1'" 6 12.010 4
921 atom 1211 36 H2 "D-Thymine H1'" 1 1.008 1
922 atom 1212 1 CT "D-Thymine C3'" 6 12.010 4
[all …]
H A Damber96.prm933 atom 1203 23 OS "D-Thymine O5'" 8 16.000 2
934 atom 1204 1 CT "D-Thymine C5'" 6 12.010 4
935 atom 1205 35 H1 "D-Thymine H5'1" 1 1.008 1
936 atom 1206 35 H1 "D-Thymine H5'2" 1 1.008 1
937 atom 1207 1 CT "D-Thymine C4'" 6 12.010 4
938 atom 1208 35 H1 "D-Thymine H4'" 1 1.008 1
939 atom 1209 23 OS "D-Thymine O4'" 8 16.000 2
940 atom 1210 1 CT "D-Thymine C1'" 6 12.010 4
941 atom 1211 36 H2 "D-Thymine H1'" 1 1.008 1
942 atom 1212 1 CT "D-Thymine C3'" 6 12.010 4
[all …]
H A Damber98.prm931 atom 1203 23 OS "D-Thymine O5'" 8 16.000 2
932 atom 1204 1 CT "D-Thymine C5'" 6 12.010 4
933 atom 1205 35 H1 "D-Thymine H5'1" 1 1.008 1
934 atom 1206 35 H1 "D-Thymine H5'2" 1 1.008 1
935 atom 1207 1 CT "D-Thymine C4'" 6 12.010 4
936 atom 1208 35 H1 "D-Thymine H4'" 1 1.008 1
937 atom 1209 23 OS "D-Thymine O4'" 8 16.000 2
938 atom 1210 1 CT "D-Thymine C1'" 6 12.010 4
939 atom 1211 36 H2 "D-Thymine H1'" 1 1.008 1
940 atom 1212 1 CT "D-Thymine C3'" 6 12.010 4
[all …]
H A Damber99.prm931 atom 1203 23 OS "D-Thymine O5'" 8 16.000 2
932 atom 1204 1 CT "D-Thymine C5'" 6 12.010 4
933 atom 1205 35 H1 "D-Thymine H5'1" 1 1.008 1
934 atom 1206 35 H1 "D-Thymine H5'2" 1 1.008 1
935 atom 1207 1 CT "D-Thymine C4'" 6 12.010 4
936 atom 1208 35 H1 "D-Thymine H4'" 1 1.008 1
937 atom 1209 23 OS "D-Thymine O4'" 8 16.000 2
938 atom 1210 1 CT "D-Thymine C1'" 6 12.010 4
939 atom 1211 36 H2 "D-Thymine H1'" 1 1.008 1
940 atom 1212 1 CT "D-Thymine C3'" 6 12.010 4
[all …]
H A Damoebabio09.prm440 atom 293 43 N* "Thymine N1" 7 14.007 3
441 atom 294 53 C "Thymine C2" 6 12.011 3
442 atom 295 58 NA "Thymine N3" 7 14.007 3
443 atom 296 53 C "Thymine C4" 6 12.011 3
444 atom 297 54 CM "Thymine C5" 6 12.011 3
445 atom 298 54 CM "Thymine C6" 6 12.011 3
446 atom 299 55 O "Thymine O2" 8 15.999 1
447 atom 300 59 H "Thymine H3" 1 1.008 1
448 atom 301 55 O "Thymine O4" 8 15.999 1
449 atom 302 60 CT "Thymine C7" 6 12.011 4
[all …]
/dports/games/katomic/katomic-21.12.3/levels/old/
H A Dlevel_552 Name=Thymine
/dports/science/gromacs/gromacs-2021.4/share/top/oplsaa.ff/
H A Datomtypes.atp338 opls_319B 14.00670 ; Uracil & Thymine N1 - only for nucleoside
339 opls_320 12.01100 ; Uracil & Thymine C2
340 opls_321 14.00670 ; Uracil & Thymine N3
341 opls_322 12.01100 ; Uracil & Thymine C4
342 opls_323 12.01100 ; Uracil & Thymine C5
343 opls_324 12.01100 ; Uracil & Thymine C6
344 opls_325 1.00800 ; Uracil & Thymine H-N1
350 opls_331 12.01100 ; Thymine C-C5
351 opls_332 1.00800 ; Thymine H-CC5
394 opls_373 12.01100 ; 1-Me Uracil or Thymine C-N1
[all …]
/dports/lang/rust/rustc-1.58.1-src/src/test/ui/did_you_mean/
H A Dissue-48492-tuple-destructure-missing-parens.rs6 Thymine, enumerator
/dports/science/chemtool/chemtool-1.6.14/
H A Dtemplates.hx14 {_("Adenine"),_("Guanine"),_("Thymine"),_("Cytosine"),_("Uracil")},
/dports/biology/ncbi-toolkit/ncbi/data/
H A DKSat.flt25 100 { symbol "T", name "Thymine"},
H A DKSgc.flt25 0 { symbol "T", name "Thymine"},
H A DKSpur.flt25 0 { symbol "T", name "Thymine"},
H A DKSpyr.flt25 100 { symbol "T", name "Thymine"},
H A Dseqcode.prt32 { symbol "T", name "Thymine"},
236 { symbol "T", name "Thymine/Uracil"}
258 { symbol "T", name "Thymine/Uracil"},
/dports/biology/ugene/ugene-40.1/data/cmdline/
H A Dgenerate-dna.uwl56 description:"Thymine content (using '25' percents by default)";

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