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Searched refs:TipData (Results 1 – 21 of 21) sorted by relevance

/dports/biology/lamarc/lamarc-2.1.8/src/datalike/
H A Dtipdata.cpp30 TipData::TipData() in TipData() function in TipData
45 void TipData::Clear() in Clear()
57 bool TipData::BelongsTo(long ind) const in BelongsTo()
64 bool TipData::IsInPopulation(const string& popname) const in IsInPopulation()
71 string TipData::GetFormattedData(const string& dlm) const in GetFormattedData()
87 long TipData::GetPartition(force_type partname) const in GetPartition()
95 LongVec1d TipData::GetBranchPartitions() const in GetBranchPartitions()
119 void TipData::RemovePartition(force_type forcename) in RemovePartition()
128 void TipData::AddPartition(pair<force_type,string> newpart) in AddPartition()
142 data_source TipData::GetDataSource() const in GetDataSource()
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H A Dlocus.h71 vector<TipData> m_tipdata; // dim: tips (LS DEBUG: phase 1)
118 vector<TipData>& GetTipData() { return m_tipdata; }; in GetTipData()
119 const vector<TipData>& GetTipData() const { return m_tipdata; }; in GetTipData()
120 vector<TipData> GetPopulationTipData(const std::string& popname) const;
157 void SetTipData(const TipData& td) { m_tipdata.push_back(td); }; in SetTipData()
158 void SetEmptyTipData(vector<TipData> td);
H A Dtipdata.h42 class TipData
59 TipData();
H A Dlocus.cpp201 void Locus::SetEmptyTipData(vector<TipData> td) in SetEmptyTipData()
344 vector<TipData> popdata; in GetPopulationTipData()
345 vector<TipData>::const_iterator tip; in GetPopulationTipData()
358 vector<TipData>::const_iterator tip = GetTipData().begin(); in GetCrossPartitionGeneticData()
373 vector<TipData>::const_iterator tip = GetTipData().begin(); in GetPartitionGeneticData()
387 vector<TipData>::const_iterator tip = GetTipData().begin(); in GetMarkerDataWithLabels()
427 vector<TipData>::const_iterator tip = GetTipData().begin(); in CountNNucleotides()
471 vector<TipData>::const_iterator tip = GetTipData().begin(); in GetNTips()
489 vector<TipData>::const_iterator tip = GetTipData().begin(); in AddUniqueNamesTo()
707 vector<TipData>::iterator tip = GetTipData().begin(); in RemovePartitionFromTipDatas()
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H A Dregion.h108 void SetTipData(long locus, const TipData& td);
157 vector<TipData> GetAllTipData(long locus) const {return m_loci[locus].GetTipData();}; in GetAllTipData()
H A Dcalculators.cpp43 const vector<TipData>& tips = locus.GetTipData(); in FrequenciesFromData()
45 vector<TipData>::const_iterator tit; in FrequenciesFromData()
H A Ddatatype.h49 class TipData; variable
H A Dregion.cpp283 void Region::SetTipData(long locus, const TipData& td) in SetTipData()
764 const vector<TipData>& tip_id = m_loci[0].GetTipData(); in CreateTree()
1105 vector<TipData> tips(GetAllTipData(locus)); in WriteFlucFile()
1110 vector<TipData>::iterator tit; in WriteFlucFile()
/dports/biology/lamarc/lamarc-2.1.8/src/xml/
H A Dtoxml.cpp34 vector<TipData> popdata; in PopulationXML()
47 const TipData* tip; in PopulationXML()
82 const TipData* PopulationXML::IndividualIsIn(const vector<TipData>& popdata, long whichind) const in IndividualIsIn()
84 vector<TipData>::const_iterator tip; in IndividualIsIn()
159 vector<TipData> inddata; in IndividualXML()
160 vector<TipData>::const_iterator tip; in IndividualXML()
168 vector<TipData>::iterator hap; in IndividualXML()
177 vector<vector<TipData> > haps(biggest+1); in IndividualXML()
178 vector<TipData> traits; in IndividualXML()
189 vector<vector<TipData> >::iterator hapit; in IndividualXML()
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H A Dtoxml.h43 class TipData; variable
58 SampleXML(const Region& region, const std::vector<TipData>& loci);
74 IndividualXML(const Region& region, const std::vector<TipData>& popdata,
89 const TipData* IndividualIsIn(const vector<TipData>& pdata, long whichind) const;
H A Dparsetreetodata.h41 TipData m_tipdata;
/dports/biology/lamarc/lamarc-2.1.8/src/tree/
H A Dtimelist.h43 class TipData; variable
149 TBranch_ptr CreateTip(const TipData & tipdata, const vector<LocusCell> & cells,
151 TBranch_ptr CreateTip(const TipData & tipdata, const vector<LocusCell> & cells,
H A Dtree.h55 class TipData; variable
110 virtual TBranch_ptr CreateTip(const TipData & tipdata, const vector<LocusCell> & cells,
112 virtual TBranch_ptr CreateTip(const TipData & tipdata, const vector<LocusCell> & cells,
297 virtual TBranch_ptr CreateTip(const TipData & tipdata, const vector<LocusCell> & cells,
300 virtual TBranch_ptr CreateTip(const TipData & tipdata, const vector<LocusCell> & cells,
H A Dbranchbuffer.h38 class TipData; variable
H A Dbranch.h65 class TipData; variable
312 TBranch(const TipData & tipdata, long nsites, const rangeset & dsites);
H A Drectree.cpp632 TBranch_ptr RecTree::CreateTip(const TipData & tipdata, const vector<LocusCell> & cells, in CreateTip()
641 TBranch_ptr RecTree::CreateTip(const TipData & tipdata, const vector<LocusCell> & cells, in CreateTip()
H A Dtree.cpp179 TBranch_ptr Tree::CreateTip(const TipData & tipdata, const vector<LocusCell> & cells, in CreateTip()
189 TBranch_ptr Tree::CreateTip(const TipData & tipdata, const vector<LocusCell> & cells, in CreateTip()
H A Dtimelist.cpp190 TBranch_ptr TimeList::CreateTip(const TipData & tipdata, const vector<LocusCell> & cells, in CreateTip()
208 TBranch_ptr TimeList::CreateTip(const TipData & tipdata, const vector<LocusCell> & cells, in CreateTip()
H A Dbranch.cpp869 TBranch::TBranch(const TipData & tipdata, long int nsites, const rangeset & diseasesites) in TBranch()
/dports/x11-toolkits/open-motif/motif-2.3.8/lib/Xm/
H A DToolTip.c325 XmToolTipConfigTrait TipData = ToolTipGetData(wid); in XmToolTipGetLabel() local
332 return(TipData ? TipData->label : NULL); in XmToolTipGetLabel()
/dports/biology/lamarc/lamarc-2.1.8/src/ui_vars/
H A Dui_vars_datapackplus.cpp509 vector<TipData> tips = thisLocus.GetTipData(); in GetUniqueAlleles()