/dports/biology/lamarc/lamarc-2.1.8/src/datalike/ |
H A D | tipdata.cpp | 30 TipData::TipData() in TipData() function in TipData 45 void TipData::Clear() in Clear() 57 bool TipData::BelongsTo(long ind) const in BelongsTo() 64 bool TipData::IsInPopulation(const string& popname) const in IsInPopulation() 71 string TipData::GetFormattedData(const string& dlm) const in GetFormattedData() 87 long TipData::GetPartition(force_type partname) const in GetPartition() 95 LongVec1d TipData::GetBranchPartitions() const in GetBranchPartitions() 119 void TipData::RemovePartition(force_type forcename) in RemovePartition() 128 void TipData::AddPartition(pair<force_type,string> newpart) in AddPartition() 142 data_source TipData::GetDataSource() const in GetDataSource() [all …]
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H A D | locus.h | 71 vector<TipData> m_tipdata; // dim: tips (LS DEBUG: phase 1) 118 vector<TipData>& GetTipData() { return m_tipdata; }; in GetTipData() 119 const vector<TipData>& GetTipData() const { return m_tipdata; }; in GetTipData() 120 vector<TipData> GetPopulationTipData(const std::string& popname) const; 157 void SetTipData(const TipData& td) { m_tipdata.push_back(td); }; in SetTipData() 158 void SetEmptyTipData(vector<TipData> td);
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H A D | tipdata.h | 42 class TipData 59 TipData();
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H A D | locus.cpp | 201 void Locus::SetEmptyTipData(vector<TipData> td) in SetEmptyTipData() 344 vector<TipData> popdata; in GetPopulationTipData() 345 vector<TipData>::const_iterator tip; in GetPopulationTipData() 358 vector<TipData>::const_iterator tip = GetTipData().begin(); in GetCrossPartitionGeneticData() 373 vector<TipData>::const_iterator tip = GetTipData().begin(); in GetPartitionGeneticData() 387 vector<TipData>::const_iterator tip = GetTipData().begin(); in GetMarkerDataWithLabels() 427 vector<TipData>::const_iterator tip = GetTipData().begin(); in CountNNucleotides() 471 vector<TipData>::const_iterator tip = GetTipData().begin(); in GetNTips() 489 vector<TipData>::const_iterator tip = GetTipData().begin(); in AddUniqueNamesTo() 707 vector<TipData>::iterator tip = GetTipData().begin(); in RemovePartitionFromTipDatas() [all …]
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H A D | region.h | 108 void SetTipData(long locus, const TipData& td); 157 vector<TipData> GetAllTipData(long locus) const {return m_loci[locus].GetTipData();}; in GetAllTipData()
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H A D | calculators.cpp | 43 const vector<TipData>& tips = locus.GetTipData(); in FrequenciesFromData() 45 vector<TipData>::const_iterator tit; in FrequenciesFromData()
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H A D | datatype.h | 49 class TipData; variable
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H A D | region.cpp | 283 void Region::SetTipData(long locus, const TipData& td) in SetTipData() 764 const vector<TipData>& tip_id = m_loci[0].GetTipData(); in CreateTree() 1105 vector<TipData> tips(GetAllTipData(locus)); in WriteFlucFile() 1110 vector<TipData>::iterator tit; in WriteFlucFile()
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/dports/biology/lamarc/lamarc-2.1.8/src/xml/ |
H A D | toxml.cpp | 34 vector<TipData> popdata; in PopulationXML() 47 const TipData* tip; in PopulationXML() 82 const TipData* PopulationXML::IndividualIsIn(const vector<TipData>& popdata, long whichind) const in IndividualIsIn() 84 vector<TipData>::const_iterator tip; in IndividualIsIn() 159 vector<TipData> inddata; in IndividualXML() 160 vector<TipData>::const_iterator tip; in IndividualXML() 168 vector<TipData>::iterator hap; in IndividualXML() 177 vector<vector<TipData> > haps(biggest+1); in IndividualXML() 178 vector<TipData> traits; in IndividualXML() 189 vector<vector<TipData> >::iterator hapit; in IndividualXML() [all …]
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H A D | toxml.h | 43 class TipData; variable 58 SampleXML(const Region& region, const std::vector<TipData>& loci); 74 IndividualXML(const Region& region, const std::vector<TipData>& popdata, 89 const TipData* IndividualIsIn(const vector<TipData>& pdata, long whichind) const;
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H A D | parsetreetodata.h | 41 TipData m_tipdata;
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/dports/biology/lamarc/lamarc-2.1.8/src/tree/ |
H A D | timelist.h | 43 class TipData; variable 149 TBranch_ptr CreateTip(const TipData & tipdata, const vector<LocusCell> & cells, 151 TBranch_ptr CreateTip(const TipData & tipdata, const vector<LocusCell> & cells,
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H A D | tree.h | 55 class TipData; variable 110 virtual TBranch_ptr CreateTip(const TipData & tipdata, const vector<LocusCell> & cells, 112 virtual TBranch_ptr CreateTip(const TipData & tipdata, const vector<LocusCell> & cells, 297 virtual TBranch_ptr CreateTip(const TipData & tipdata, const vector<LocusCell> & cells, 300 virtual TBranch_ptr CreateTip(const TipData & tipdata, const vector<LocusCell> & cells,
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H A D | branchbuffer.h | 38 class TipData; variable
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H A D | branch.h | 65 class TipData; variable 312 TBranch(const TipData & tipdata, long nsites, const rangeset & dsites);
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H A D | rectree.cpp | 632 TBranch_ptr RecTree::CreateTip(const TipData & tipdata, const vector<LocusCell> & cells, in CreateTip() 641 TBranch_ptr RecTree::CreateTip(const TipData & tipdata, const vector<LocusCell> & cells, in CreateTip()
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H A D | tree.cpp | 179 TBranch_ptr Tree::CreateTip(const TipData & tipdata, const vector<LocusCell> & cells, in CreateTip() 189 TBranch_ptr Tree::CreateTip(const TipData & tipdata, const vector<LocusCell> & cells, in CreateTip()
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H A D | timelist.cpp | 190 TBranch_ptr TimeList::CreateTip(const TipData & tipdata, const vector<LocusCell> & cells, in CreateTip() 208 TBranch_ptr TimeList::CreateTip(const TipData & tipdata, const vector<LocusCell> & cells, in CreateTip()
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H A D | branch.cpp | 869 TBranch::TBranch(const TipData & tipdata, long int nsites, const rangeset & diseasesites) in TBranch()
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/dports/x11-toolkits/open-motif/motif-2.3.8/lib/Xm/ |
H A D | ToolTip.c | 325 XmToolTipConfigTrait TipData = ToolTipGetData(wid); in XmToolTipGetLabel() local 332 return(TipData ? TipData->label : NULL); in XmToolTipGetLabel()
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/dports/biology/lamarc/lamarc-2.1.8/src/ui_vars/ |
H A D | ui_vars_datapackplus.cpp | 509 vector<TipData> tips = thisLocus.GetTipData(); in GetUniqueAlleles()
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