Searched refs:TrustedmRNA (Results 1 – 5 of 5) sorted by relevance
132 …if((!a.TrustedmRNA().empty() || !a.TrustedProt().empty()) && (!b.TrustedmRNA().empty() || !b.Trust… in BadOverlapTest()
443 …if(a.Exons().size() > 1 && (a.Status()&CGeneModel::ecDNAIntrons) == 0 && a.TrustedmRNA().empty() &… in IsAllowedAlternative()601 bool atrusted = !a.TrustedmRNA().empty() || !a.TrustedProt().empty(); in DescendingModelOrder()602 bool btrusted = !b.TrustedmRNA().empty() || !b.TrustedProt().empty(); in DescendingModelOrder()723 … if(!algn.TrustedmRNA().empty() || !algn.TrustedProt().empty()) { // trusted gene in CheckCompatibility()1146 if(!ai.TrustedmRNA().empty() || !ai.TrustedProt().empty() || ai.ReadingFrame().Empty()) in FilterOutTandemOverlap()4241 …if(!align->TrustedProt().empty() || (!align->TrustedmRNA().empty() && (*i)->m_cds_info->ProtReadin… in HasTrustedEvidence()5923 …InsertTrustedmRNA(*(*i)->m_align->TrustedmRNA().begin()); // … in CollectTrustedmRNAsProts()5949 if(Continuous() && TrustedmRNA().empty() && TrustedProt().empty() && !palignedlen.empty()) { in CollectTrustedmRNAsProts()6089 if(orig_align->Continuous() && (!it->TrustedmRNA().empty() || !it->TrustedProt().empty()) in FilterOutChimeras()6805 if(!align.TrustedmRNA().empty()) in TrimTranscript()[all …]
506 ITERATE(list< CRef<CSeq_id> >, i, algn.TrustedmRNA()) { in AddSupport()
1707 ITERATE(list< CRef<CSeq_id> >, i, a.TrustedmRNA()) { in CollectAttributes()
567 const list< CRef<CSeq_id> >& TrustedmRNA() const { return m_trusted_mrna; } in TrustedmRNA() function in CGeneModel